Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05820 and PGA1_c05830 are separated by 105 nucleotides PGA1_c05830 and PGA1_c05840 are separated by 206 nucleotides PGA1_c05840 and PGA1_c05850 are separated by 361 nucleotides
PGA1_c05820: PGA1_c05820 - ribosomal protein L11 methyltransferase PrmA, at 597,200 to 598,072
_c05820
PGA1_c05830: PGA1_c05830 - hypothetical protein, at 598,178 to 598,522
_c05830
PGA1_c05840: PGA1_c05840 - Uncharacterized conserved small protein, at 598,729 to 598,947
_c05840
PGA1_c05850: PGA1_c05850 - crossover junction endodeoxyribonuclease RuvC, at 599,309 to 599,806
_c05850
Position (kb) 598
599 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 597.183 kb on - strand at 597.183 kb on - strand at 597.183 kb on - strand at 597.215 kb on + strand at 597.279 kb on + strand at 597.294 kb on - strand, within PGA1_c05820 at 597.302 kb on - strand, within PGA1_c05820 at 597.302 kb on - strand, within PGA1_c05820 at 597.321 kb on + strand, within PGA1_c05820 at 597.393 kb on - strand, within PGA1_c05820 at 597.404 kb on + strand, within PGA1_c05820 at 597.412 kb on - strand, within PGA1_c05820 at 597.421 kb on - strand, within PGA1_c05820 at 597.438 kb on - strand, within PGA1_c05820 at 597.438 kb on - strand, within PGA1_c05820 at 597.475 kb on + strand, within PGA1_c05820 at 597.483 kb on - strand, within PGA1_c05820 at 597.505 kb on - strand, within PGA1_c05820 at 597.578 kb on + strand, within PGA1_c05820 at 597.584 kb on - strand, within PGA1_c05820 at 597.591 kb on - strand, within PGA1_c05820 at 597.593 kb on + strand, within PGA1_c05820 at 597.593 kb on + strand, within PGA1_c05820 at 597.593 kb on + strand, within PGA1_c05820 at 597.601 kb on - strand, within PGA1_c05820 at 597.603 kb on + strand, within PGA1_c05820 at 597.611 kb on - strand, within PGA1_c05820 at 597.611 kb on - strand, within PGA1_c05820 at 597.612 kb on + strand, within PGA1_c05820 at 597.703 kb on + strand, within PGA1_c05820 at 597.703 kb on + strand, within PGA1_c05820 at 597.711 kb on - strand, within PGA1_c05820 at 597.812 kb on - strand, within PGA1_c05820 at 597.828 kb on + strand, within PGA1_c05820 at 597.828 kb on + strand, within PGA1_c05820 at 597.828 kb on + strand, within PGA1_c05820 at 597.832 kb on + strand, within PGA1_c05820 at 597.838 kb on + strand, within PGA1_c05820 at 597.838 kb on + strand, within PGA1_c05820 at 597.846 kb on - strand, within PGA1_c05820 at 597.883 kb on + strand, within PGA1_c05820 at 598.005 kb on + strand at 598.011 kb on + strand at 598.011 kb on + strand at 598.019 kb on - strand at 598.159 kb on + strand at 598.160 kb on - strand at 598.179 kb on + strand at 598.181 kb on + strand at 598.182 kb on - strand at 598.189 kb on - strand at 598.216 kb on - strand, within PGA1_c05830 at 598.236 kb on + strand, within PGA1_c05830 at 598.244 kb on - strand, within PGA1_c05830 at 598.244 kb on - strand, within PGA1_c05830 at 598.249 kb on + strand, within PGA1_c05830 at 598.251 kb on + strand, within PGA1_c05830 at 598.251 kb on + strand, within PGA1_c05830 at 598.257 kb on + strand, within PGA1_c05830 at 598.257 kb on - strand, within PGA1_c05830 at 598.257 kb on - strand, within PGA1_c05830 at 598.280 kb on - strand, within PGA1_c05830 at 598.285 kb on - strand, within PGA1_c05830 at 598.360 kb on + strand, within PGA1_c05830 at 598.360 kb on + strand, within PGA1_c05830 at 598.368 kb on - strand, within PGA1_c05830 at 598.368 kb on - strand, within PGA1_c05830 at 598.369 kb on - strand, within PGA1_c05830 at 598.426 kb on + strand, within PGA1_c05830 at 598.466 kb on - strand, within PGA1_c05830 at 598.494 kb on - strand at 598.506 kb on + strand at 598.509 kb on - strand at 598.509 kb on - strand at 598.509 kb on - strand at 598.514 kb on - strand at 598.576 kb on + strand at 598.586 kb on + strand at 598.586 kb on + strand at 598.594 kb on - strand at 598.594 kb on - strand at 598.594 kb on - strand at 598.594 kb on - strand at 598.605 kb on + strand at 598.613 kb on - strand at 598.633 kb on - strand at 598.680 kb on + strand at 598.712 kb on + strand at 598.739 kb on + strand at 598.774 kb on + strand, within PGA1_c05840 at 598.782 kb on - strand, within PGA1_c05840 at 598.782 kb on - strand, within PGA1_c05840 at 598.787 kb on - strand, within PGA1_c05840 at 598.787 kb on - strand, within PGA1_c05840 at 598.787 kb on - strand, within PGA1_c05840 at 598.943 kb on + strand at 599.009 kb on - strand at 599.103 kb on + strand at 599.111 kb on - strand at 599.144 kb on - strand at 599.291 kb on + strand at 599.296 kb on + strand at 599.304 kb on - strand at 599.309 kb on - strand at 599.309 kb on - strand at 599.357 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 597,183 - -2.1 597,183 - -1.1 597,183 - -0.6 597,215 + -2.5 597,279 + -0.2 597,294 - PGA1_c05820 0.11 +3.2 597,302 - PGA1_c05820 0.12 +0.4 597,302 - PGA1_c05820 0.12 +1.6 597,321 + PGA1_c05820 0.14 -0.7 597,393 - PGA1_c05820 0.22 -1.2 597,404 + PGA1_c05820 0.23 +1.2 597,412 - PGA1_c05820 0.24 +0.6 597,421 - PGA1_c05820 0.25 -0.4 597,438 - PGA1_c05820 0.27 -0.4 597,438 - PGA1_c05820 0.27 -1.1 597,475 + PGA1_c05820 0.32 -0.9 597,483 - PGA1_c05820 0.32 -1.8 597,505 - PGA1_c05820 0.35 +1.8 597,578 + PGA1_c05820 0.43 +0.3 597,584 - PGA1_c05820 0.44 +0.9 597,591 - PGA1_c05820 0.45 -0.6 597,593 + PGA1_c05820 0.45 +0.9 597,593 + PGA1_c05820 0.45 -0.2 597,593 + PGA1_c05820 0.45 +0.1 597,601 - PGA1_c05820 0.46 +0.2 597,603 + PGA1_c05820 0.46 -1.7 597,611 - PGA1_c05820 0.47 -2.8 597,611 - PGA1_c05820 0.47 -0.6 597,612 + PGA1_c05820 0.47 +1.2 597,703 + PGA1_c05820 0.58 -0.1 597,703 + PGA1_c05820 0.58 -0.2 597,711 - PGA1_c05820 0.59 +0.6 597,812 - PGA1_c05820 0.70 -1.7 597,828 + PGA1_c05820 0.72 +0.2 597,828 + PGA1_c05820 0.72 +0.8 597,828 + PGA1_c05820 0.72 -1.6 597,832 + PGA1_c05820 0.72 -0.1 597,838 + PGA1_c05820 0.73 -0.4 597,838 + PGA1_c05820 0.73 +0.0 597,846 - PGA1_c05820 0.74 -0.2 597,883 + PGA1_c05820 0.78 -0.4 598,005 + +0.2 598,011 + -0.7 598,011 + +0.3 598,019 - -1.7 598,159 + -1.5 598,160 - -1.9 598,179 + +0.1 598,181 + +0.6 598,182 - +0.1 598,189 - -0.6 598,216 - PGA1_c05830 0.11 -0.0 598,236 + PGA1_c05830 0.17 -1.3 598,244 - PGA1_c05830 0.19 -0.0 598,244 - PGA1_c05830 0.19 +1.1 598,249 + PGA1_c05830 0.21 +1.8 598,251 + PGA1_c05830 0.21 -1.7 598,251 + PGA1_c05830 0.21 -0.4 598,257 + PGA1_c05830 0.23 +1.1 598,257 - PGA1_c05830 0.23 -2.5 598,257 - PGA1_c05830 0.23 -1.5 598,280 - PGA1_c05830 0.30 -0.5 598,285 - PGA1_c05830 0.31 -1.2 598,360 + PGA1_c05830 0.53 -0.8 598,360 + PGA1_c05830 0.53 -1.4 598,368 - PGA1_c05830 0.55 -0.1 598,368 - PGA1_c05830 0.55 -1.9 598,369 - PGA1_c05830 0.55 -0.6 598,426 + PGA1_c05830 0.72 +0.6 598,466 - PGA1_c05830 0.83 -1.4 598,494 - -0.1 598,506 + -0.3 598,509 - -0.9 598,509 - +0.2 598,509 - +0.9 598,514 - +0.4 598,576 + -0.5 598,586 + -1.5 598,586 + +0.2 598,594 - -0.6 598,594 - -1.0 598,594 - -0.1 598,594 - -0.0 598,605 + -0.7 598,613 - +1.0 598,633 - +0.6 598,680 + +2.2 598,712 + -0.4 598,739 + +0.5 598,774 + PGA1_c05840 0.21 -2.2 598,782 - PGA1_c05840 0.24 +0.6 598,782 - PGA1_c05840 0.24 +0.0 598,787 - PGA1_c05840 0.26 +0.3 598,787 - PGA1_c05840 0.26 +0.1 598,787 - PGA1_c05840 0.26 -0.6 598,943 + -1.7 599,009 - -0.4 599,103 + +0.2 599,111 - -1.6 599,144 - -0.4 599,291 + -1.4 599,296 + +0.9 599,304 - +0.6 599,309 - -1.0 599,309 - -0.2 599,357 - +3.1
Or see this region's nucleotide sequence