Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05670

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05660 and PGA1_c05670 overlap by 4 nucleotidesPGA1_c05670 and PGA1_c05680 overlap by 4 nucleotides PGA1_c05660: PGA1_c05660 - Predicted ATPase, at 578,317 to 579,732 _c05660 PGA1_c05670: PGA1_c05670 - acetyltransferase domain-containing protein, at 579,729 to 580,283 _c05670 PGA1_c05680: PGA1_c05680 - Predicted membrane protein, at 580,280 to 581,335 _c05680 Position (kb) 579 580 581Strain fitness (log2 ratio) -2 -1 0 1 2at 578.782 kb on + strand, within PGA1_c05660at 578.947 kb on + strand, within PGA1_c05660at 578.952 kb on + strand, within PGA1_c05660at 578.952 kb on + strand, within PGA1_c05660at 579.010 kb on - strand, within PGA1_c05660at 579.014 kb on + strand, within PGA1_c05660at 579.159 kb on + strand, within PGA1_c05660at 579.213 kb on - strand, within PGA1_c05660at 579.323 kb on - strand, within PGA1_c05660at 579.419 kb on + strand, within PGA1_c05660at 579.490 kb on - strand, within PGA1_c05660at 579.495 kb on - strand, within PGA1_c05660at 579.511 kb on + strand, within PGA1_c05660at 579.511 kb on + strand, within PGA1_c05660at 579.511 kb on + strand, within PGA1_c05660at 579.519 kb on - strand, within PGA1_c05660at 579.553 kb on + strand, within PGA1_c05660at 579.629 kb on - strandat 579.649 kb on + strandat 579.649 kb on + strandat 579.657 kb on - strandat 579.657 kb on - strandat 579.679 kb on + strandat 579.679 kb on + strandat 579.687 kb on - strandat 579.688 kb on + strandat 579.733 kb on - strandat 579.735 kb on + strandat 579.744 kb on - strandat 579.777 kb on - strandat 579.842 kb on + strand, within PGA1_c05670at 579.852 kb on + strand, within PGA1_c05670at 579.898 kb on + strand, within PGA1_c05670at 579.901 kb on - strand, within PGA1_c05670at 580.046 kb on + strand, within PGA1_c05670at 580.054 kb on - strand, within PGA1_c05670at 580.054 kb on - strand, within PGA1_c05670at 580.100 kb on - strand, within PGA1_c05670at 580.112 kb on + strand, within PGA1_c05670at 580.112 kb on + strand, within PGA1_c05670at 580.137 kb on + strand, within PGA1_c05670at 580.145 kb on - strand, within PGA1_c05670at 580.239 kb on - strandat 580.239 kb on - strandat 580.284 kb on + strandat 580.370 kb on + strandat 580.429 kb on + strand, within PGA1_c05680at 580.494 kb on - strand, within PGA1_c05680at 580.574 kb on + strand, within PGA1_c05680at 580.800 kb on + strand, within PGA1_c05680at 580.815 kb on + strand, within PGA1_c05680at 580.823 kb on - strand, within PGA1_c05680at 580.976 kb on + strand, within PGA1_c05680at 581.053 kb on + strand, within PGA1_c05680at 581.066 kb on - strand, within PGA1_c05680at 581.089 kb on - strand, within PGA1_c05680at 581.131 kb on + strand, within PGA1_c05680at 581.149 kb on - strand, within PGA1_c05680at 581.151 kb on + strand, within PGA1_c05680at 581.156 kb on + strand, within PGA1_c05680at 581.169 kb on - strand, within PGA1_c05680at 581.189 kb on + strand, within PGA1_c05680at 581.197 kb on - strand, within PGA1_c05680at 581.197 kb on - strand, within PGA1_c05680at 581.197 kb on - strand, within PGA1_c05680at 581.197 kb on - strand, within PGA1_c05680at 581.197 kb on - strand, within PGA1_c05680at 581.267 kb on - strandat 581.267 kb on - strandat 581.276 kb on + strandat 581.276 kb on + strandat 581.276 kb on + strandat 581.283 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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578,782 + PGA1_c05660 0.33 +0.9
578,947 + PGA1_c05660 0.44 +0.6
578,952 + PGA1_c05660 0.45 +0.6
578,952 + PGA1_c05660 0.45 -0.9
579,010 - PGA1_c05660 0.49 +0.2
579,014 + PGA1_c05660 0.49 +1.0
579,159 + PGA1_c05660 0.59 -0.8
579,213 - PGA1_c05660 0.63 -0.8
579,323 - PGA1_c05660 0.71 -0.5
579,419 + PGA1_c05660 0.78 -1.8
579,490 - PGA1_c05660 0.83 -0.9
579,495 - PGA1_c05660 0.83 -0.7
579,511 + PGA1_c05660 0.84 -0.0
579,511 + PGA1_c05660 0.84 -0.1
579,511 + PGA1_c05660 0.84 +0.6
579,519 - PGA1_c05660 0.85 -0.2
579,553 + PGA1_c05660 0.87 +0.6
579,629 - +0.2
579,649 + +0.1
579,649 + -0.9
579,657 - +0.4
579,657 - +2.0
579,679 + -0.4
579,679 + +1.2
579,687 - +0.1
579,688 + +0.6
579,733 - +0.1
579,735 + +0.1
579,744 - +0.1
579,777 - +0.8
579,842 + PGA1_c05670 0.20 -0.9
579,852 + PGA1_c05670 0.22 -0.9
579,898 + PGA1_c05670 0.30 +0.2
579,901 - PGA1_c05670 0.31 -0.9
580,046 + PGA1_c05670 0.57 +1.2
580,054 - PGA1_c05670 0.59 +0.3
580,054 - PGA1_c05670 0.59 -2.2
580,100 - PGA1_c05670 0.67 -0.0
580,112 + PGA1_c05670 0.69 -0.9
580,112 + PGA1_c05670 0.69 +0.6
580,137 + PGA1_c05670 0.74 +0.1
580,145 - PGA1_c05670 0.75 -1.7
580,239 - +1.0
580,239 - +0.6
580,284 + +0.6
580,370 + +0.2
580,429 + PGA1_c05680 0.14 -0.6
580,494 - PGA1_c05680 0.20 +0.6
580,574 + PGA1_c05680 0.28 +1.1
580,800 + PGA1_c05680 0.49 +0.1
580,815 + PGA1_c05680 0.51 +0.2
580,823 - PGA1_c05680 0.51 -1.7
580,976 + PGA1_c05680 0.66 -1.7
581,053 + PGA1_c05680 0.73 +0.1
581,066 - PGA1_c05680 0.74 -0.4
581,089 - PGA1_c05680 0.77 +0.1
581,131 + PGA1_c05680 0.81 -1.7
581,149 - PGA1_c05680 0.82 +0.1
581,151 + PGA1_c05680 0.82 +0.1
581,156 + PGA1_c05680 0.83 -2.4
581,169 - PGA1_c05680 0.84 +1.2
581,189 + PGA1_c05680 0.86 +1.1
581,197 - PGA1_c05680 0.87 -2.5
581,197 - PGA1_c05680 0.87 +0.1
581,197 - PGA1_c05680 0.87 -0.4
581,197 - PGA1_c05680 0.87 +0.6
581,197 - PGA1_c05680 0.87 +1.0
581,267 - +1.1
581,267 - -2.3
581,276 + -0.6
581,276 + -0.8
581,276 + +1.5
581,283 + +2.6

Or see this region's nucleotide sequence