Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05410 and PGA1_c05420 are separated by 172 nucleotides PGA1_c05420 and PGA1_c05430 are separated by 24 nucleotides
PGA1_c05410: PGA1_c05410 - hypothetical protein, at 548,586 to 549,695
_c05410
PGA1_c05420: PGA1_c05420 - glucokinase (EC 2.7.1.2) <small>(from data)</small>, at 549,868 to 550,818
_c05420
PGA1_c05430: PGA1_c05430 - Uncharacterized protein conserved in bacteria, at 550,843 to 554,508
_c05430
Position (kb) 549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 548.876 kb on + strand, within PGA1_c05410 at 548.944 kb on - strand, within PGA1_c05410 at 548.973 kb on - strand, within PGA1_c05410 at 548.989 kb on + strand, within PGA1_c05410 at 548.989 kb on + strand, within PGA1_c05410 at 549.059 kb on - strand, within PGA1_c05410 at 549.059 kb on - strand, within PGA1_c05410 at 549.069 kb on - strand, within PGA1_c05410 at 549.108 kb on - strand, within PGA1_c05410 at 549.108 kb on - strand, within PGA1_c05410 at 549.108 kb on - strand, within PGA1_c05410 at 549.113 kb on - strand, within PGA1_c05410 at 549.170 kb on + strand, within PGA1_c05410 at 549.185 kb on + strand, within PGA1_c05410 at 549.212 kb on + strand, within PGA1_c05410 at 549.216 kb on + strand, within PGA1_c05410 at 549.218 kb on + strand, within PGA1_c05410 at 549.224 kb on - strand, within PGA1_c05410 at 549.291 kb on - strand, within PGA1_c05410 at 549.333 kb on + strand, within PGA1_c05410 at 549.336 kb on - strand, within PGA1_c05410 at 549.341 kb on - strand, within PGA1_c05410 at 549.351 kb on - strand, within PGA1_c05410 at 549.439 kb on - strand, within PGA1_c05410 at 549.444 kb on + strand, within PGA1_c05410 at 549.464 kb on - strand, within PGA1_c05410 at 549.469 kb on - strand, within PGA1_c05410 at 549.543 kb on - strand, within PGA1_c05410 at 549.584 kb on - strand, within PGA1_c05410 at 549.590 kb on - strand at 549.648 kb on + strand at 549.654 kb on + strand at 549.656 kb on - strand at 549.659 kb on + strand at 549.659 kb on + strand at 549.659 kb on + strand at 549.659 kb on + strand at 549.667 kb on - strand at 549.688 kb on - strand at 549.714 kb on + strand at 549.714 kb on + strand at 549.714 kb on + strand at 549.714 kb on + strand at 549.714 kb on + strand at 549.714 kb on + strand at 549.722 kb on - strand at 549.722 kb on - strand at 549.724 kb on + strand at 549.756 kb on - strand at 549.763 kb on - strand at 549.832 kb on - strand at 550.121 kb on - strand, within PGA1_c05420 at 550.126 kb on - strand, within PGA1_c05420 at 550.235 kb on - strand, within PGA1_c05420 at 550.361 kb on + strand, within PGA1_c05420 at 550.677 kb on - strand, within PGA1_c05420 at 550.834 kb on - strand at 550.897 kb on - strand at 550.897 kb on - strand at 550.917 kb on - strand at 550.979 kb on + strand at 550.992 kb on - strand at 551.032 kb on - strand at 551.148 kb on + strand at 551.149 kb on + strand at 551.149 kb on + strand at 551.210 kb on - strand, within PGA1_c05430 at 551.267 kb on - strand, within PGA1_c05430 at 551.274 kb on - strand, within PGA1_c05430 at 551.292 kb on - strand, within PGA1_c05430 at 551.405 kb on + strand, within PGA1_c05430 at 551.408 kb on - strand, within PGA1_c05430 at 551.518 kb on + strand, within PGA1_c05430 at 551.672 kb on - strand, within PGA1_c05430 at 551.736 kb on + strand, within PGA1_c05430 at 551.744 kb on - strand, within PGA1_c05430
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 548,876 + PGA1_c05410 0.26 +0.6 548,944 - PGA1_c05410 0.32 -1.9 548,973 - PGA1_c05410 0.35 -0.7 548,989 + PGA1_c05410 0.36 -2.5 548,989 + PGA1_c05410 0.36 +0.4 549,059 - PGA1_c05410 0.43 +1.8 549,059 - PGA1_c05410 0.43 +1.6 549,069 - PGA1_c05410 0.44 -0.9 549,108 - PGA1_c05410 0.47 +0.5 549,108 - PGA1_c05410 0.47 +1.1 549,108 - PGA1_c05410 0.47 +0.6 549,113 - PGA1_c05410 0.47 -1.2 549,170 + PGA1_c05410 0.53 +1.1 549,185 + PGA1_c05410 0.54 +0.0 549,212 + PGA1_c05410 0.56 +1.0 549,216 + PGA1_c05410 0.57 +0.3 549,218 + PGA1_c05410 0.57 +2.4 549,224 - PGA1_c05410 0.57 -0.4 549,291 - PGA1_c05410 0.64 +1.6 549,333 + PGA1_c05410 0.67 +0.2 549,336 - PGA1_c05410 0.68 +0.4 549,341 - PGA1_c05410 0.68 +0.4 549,351 - PGA1_c05410 0.69 +0.1 549,439 - PGA1_c05410 0.77 +0.4 549,444 + PGA1_c05410 0.77 +0.4 549,464 - PGA1_c05410 0.79 +0.4 549,469 - PGA1_c05410 0.80 +0.5 549,543 - PGA1_c05410 0.86 -0.0 549,584 - PGA1_c05410 0.90 -0.4 549,590 - +0.8 549,648 + -0.1 549,654 + +0.4 549,656 - +0.5 549,659 + +1.3 549,659 + +1.4 549,659 + +0.2 549,659 + +1.0 549,667 - -0.1 549,688 - +1.3 549,714 + +0.1 549,714 + +0.5 549,714 + +1.1 549,714 + +1.1 549,714 + -0.8 549,714 + +0.9 549,722 - -0.8 549,722 - +0.2 549,724 + -0.6 549,756 - -1.8 549,763 - +1.6 549,832 - -0.1 550,121 - PGA1_c05420 0.27 -0.4 550,126 - PGA1_c05420 0.27 -0.9 550,235 - PGA1_c05420 0.39 -0.8 550,361 + PGA1_c05420 0.52 +0.6 550,677 - PGA1_c05420 0.85 -3.3 550,834 - -0.4 550,897 - -0.4 550,897 - +0.9 550,917 - +1.1 550,979 + -0.6 550,992 - -0.6 551,032 - -0.8 551,148 + +1.3 551,149 + -0.5 551,149 + -0.9 551,210 - PGA1_c05430 0.10 -0.1 551,267 - PGA1_c05430 0.12 +1.6 551,274 - PGA1_c05430 0.12 -0.2 551,292 - PGA1_c05430 0.12 -0.8 551,405 + PGA1_c05430 0.15 +0.5 551,408 - PGA1_c05430 0.15 -1.4 551,518 + PGA1_c05430 0.18 -1.1 551,672 - PGA1_c05430 0.23 -0.2 551,736 + PGA1_c05430 0.24 -0.3 551,744 - PGA1_c05430 0.25 -0.2
Or see this region's nucleotide sequence