Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04700 and PGA1_c04710 are separated by 67 nucleotides PGA1_c04710 and PGA1_c04720 are separated by 205 nucleotides PGA1_c04720 and PGA1_c04730 are separated by 11 nucleotides
PGA1_c04700: PGA1_c04700 - hypothetical protein, at 462,069 to 463,013
_c04700
PGA1_c04710: PGA1_c04710 - (dimethylallyl)adenosine tRNA methylthiotransferase MiaB, at 463,081 to 464,403
_c04710
PGA1_c04720: PGA1_c04720 - outer membrane protein OmpA-domain containing protein, at 464,609 to 465,160
_c04720
PGA1_c04730: PGA1_c04730 - hypothetical protein, at 465,172 to 465,474
_c04730
Position (kb) 463
464
465 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 462.085 kb on + strand at 462.085 kb on + strand at 462.093 kb on - strand at 462.139 kb on + strand at 462.164 kb on - strand, within PGA1_c04700 at 462.197 kb on + strand, within PGA1_c04700 at 462.197 kb on + strand, within PGA1_c04700 at 462.213 kb on - strand, within PGA1_c04700 at 462.237 kb on - strand, within PGA1_c04700 at 462.252 kb on + strand, within PGA1_c04700 at 462.260 kb on - strand, within PGA1_c04700 at 462.260 kb on - strand, within PGA1_c04700 at 462.261 kb on + strand, within PGA1_c04700 at 462.267 kb on - strand, within PGA1_c04700 at 462.269 kb on - strand, within PGA1_c04700 at 462.272 kb on - strand, within PGA1_c04700 at 462.272 kb on - strand, within PGA1_c04700 at 462.274 kb on - strand, within PGA1_c04700 at 462.274 kb on - strand, within PGA1_c04700 at 462.275 kb on + strand, within PGA1_c04700 at 462.305 kb on + strand, within PGA1_c04700 at 462.481 kb on - strand, within PGA1_c04700 at 462.543 kb on + strand, within PGA1_c04700 at 462.551 kb on - strand, within PGA1_c04700 at 462.561 kb on + strand, within PGA1_c04700 at 462.603 kb on - strand, within PGA1_c04700 at 462.605 kb on - strand, within PGA1_c04700 at 462.651 kb on - strand, within PGA1_c04700 at 462.651 kb on - strand, within PGA1_c04700 at 462.651 kb on - strand, within PGA1_c04700 at 462.653 kb on + strand, within PGA1_c04700 at 462.763 kb on - strand, within PGA1_c04700 at 462.789 kb on - strand, within PGA1_c04700 at 462.789 kb on - strand, within PGA1_c04700 at 462.812 kb on + strand, within PGA1_c04700 at 462.815 kb on - strand, within PGA1_c04700 at 462.824 kb on + strand, within PGA1_c04700 at 462.824 kb on + strand, within PGA1_c04700 at 462.830 kb on + strand, within PGA1_c04700 at 462.832 kb on - strand, within PGA1_c04700 at 462.843 kb on - strand, within PGA1_c04700 at 462.847 kb on + strand, within PGA1_c04700 at 462.855 kb on - strand, within PGA1_c04700 at 462.872 kb on - strand, within PGA1_c04700 at 462.920 kb on + strand at 462.941 kb on - strand at 462.969 kb on - strand at 463.000 kb on + strand at 463.027 kb on + strand at 463.075 kb on + strand at 463.110 kb on + strand at 463.118 kb on - strand at 463.146 kb on + strand at 463.168 kb on + strand at 463.176 kb on - strand at 463.218 kb on + strand, within PGA1_c04710 at 463.226 kb on + strand, within PGA1_c04710 at 463.227 kb on - strand, within PGA1_c04710 at 463.270 kb on - strand, within PGA1_c04710 at 463.270 kb on - strand, within PGA1_c04710 at 463.275 kb on - strand, within PGA1_c04710 at 463.293 kb on - strand, within PGA1_c04710 at 463.331 kb on + strand, within PGA1_c04710 at 463.331 kb on + strand, within PGA1_c04710 at 463.445 kb on + strand, within PGA1_c04710 at 463.452 kb on - strand, within PGA1_c04710 at 463.453 kb on + strand, within PGA1_c04710 at 463.453 kb on - strand, within PGA1_c04710 at 463.453 kb on - strand, within PGA1_c04710 at 463.453 kb on - strand, within PGA1_c04710 at 463.453 kb on - strand, within PGA1_c04710 at 463.453 kb on - strand, within PGA1_c04710 at 463.520 kb on - strand, within PGA1_c04710 at 463.520 kb on - strand, within PGA1_c04710 at 463.523 kb on + strand, within PGA1_c04710 at 463.529 kb on - strand, within PGA1_c04710 at 463.584 kb on + strand, within PGA1_c04710 at 463.592 kb on - strand, within PGA1_c04710 at 463.639 kb on + strand, within PGA1_c04710 at 463.639 kb on + strand, within PGA1_c04710 at 463.655 kb on + strand, within PGA1_c04710 at 463.655 kb on + strand, within PGA1_c04710 at 463.733 kb on + strand, within PGA1_c04710 at 463.780 kb on - strand, within PGA1_c04710 at 463.837 kb on + strand, within PGA1_c04710 at 463.872 kb on - strand, within PGA1_c04710 at 463.874 kb on + strand, within PGA1_c04710 at 463.884 kb on + strand, within PGA1_c04710 at 463.892 kb on - strand, within PGA1_c04710 at 463.916 kb on + strand, within PGA1_c04710 at 463.917 kb on - strand, within PGA1_c04710 at 464.045 kb on + strand, within PGA1_c04710 at 464.052 kb on - strand, within PGA1_c04710 at 464.053 kb on - strand, within PGA1_c04710 at 464.053 kb on - strand, within PGA1_c04710 at 464.107 kb on - strand, within PGA1_c04710 at 464.206 kb on + strand, within PGA1_c04710 at 464.214 kb on - strand, within PGA1_c04710 at 464.214 kb on - strand, within PGA1_c04710 at 464.216 kb on + strand, within PGA1_c04710 at 464.224 kb on - strand, within PGA1_c04710 at 464.286 kb on - strand at 464.294 kb on + strand at 464.355 kb on + strand at 464.530 kb on - strand at 464.530 kb on - strand at 464.530 kb on - strand at 464.533 kb on + strand at 464.533 kb on + strand at 464.541 kb on - strand at 464.541 kb on - strand at 464.541 kb on - strand at 464.556 kb on + strand at 464.577 kb on + strand at 464.577 kb on + strand at 464.579 kb on - strand at 464.584 kb on - strand at 464.599 kb on + strand at 464.607 kb on - strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.630 kb on + strand at 464.638 kb on - strand at 464.638 kb on - strand at 464.638 kb on - strand at 464.666 kb on - strand, within PGA1_c04720 at 464.666 kb on - strand, within PGA1_c04720 at 464.688 kb on + strand, within PGA1_c04720 at 464.696 kb on - strand, within PGA1_c04720 at 464.717 kb on - strand, within PGA1_c04720 at 464.730 kb on - strand, within PGA1_c04720 at 464.730 kb on - strand, within PGA1_c04720 at 464.757 kb on - strand, within PGA1_c04720 at 464.778 kb on + strand, within PGA1_c04720 at 464.833 kb on + strand, within PGA1_c04720 at 464.841 kb on + strand, within PGA1_c04720 at 464.868 kb on - strand, within PGA1_c04720 at 464.897 kb on + strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.905 kb on - strand, within PGA1_c04720 at 464.976 kb on + strand, within PGA1_c04720 at 464.984 kb on - strand, within PGA1_c04720 at 465.025 kb on + strand, within PGA1_c04720 at 465.057 kb on + strand, within PGA1_c04720 at 465.065 kb on - strand, within PGA1_c04720 at 465.070 kb on + strand, within PGA1_c04720 at 465.078 kb on - strand, within PGA1_c04720 at 465.130 kb on - strand at 465.154 kb on + strand at 465.162 kb on - strand at 465.162 kb on - strand at 465.164 kb on + strand at 465.195 kb on + strand at 465.201 kb on - strand at 465.267 kb on + strand, within PGA1_c04730 at 465.282 kb on - strand, within PGA1_c04730 at 465.287 kb on - strand, within PGA1_c04730 at 465.350 kb on + strand, within PGA1_c04730 at 465.401 kb on + strand, within PGA1_c04730
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 462,085 + -0.4 462,085 + -1.7 462,093 - -0.5 462,139 + +1.1 462,164 - PGA1_c04700 0.10 +0.1 462,197 + PGA1_c04700 0.14 -0.3 462,197 + PGA1_c04700 0.14 +0.2 462,213 - PGA1_c04700 0.15 +0.5 462,237 - PGA1_c04700 0.18 -0.0 462,252 + PGA1_c04700 0.19 -0.8 462,260 - PGA1_c04700 0.20 +0.7 462,260 - PGA1_c04700 0.20 -0.2 462,261 + PGA1_c04700 0.20 +1.6 462,267 - PGA1_c04700 0.21 -0.1 462,269 - PGA1_c04700 0.21 +0.3 462,272 - PGA1_c04700 0.21 -0.0 462,272 - PGA1_c04700 0.21 +4.0 462,274 - PGA1_c04700 0.22 +0.1 462,274 - PGA1_c04700 0.22 +0.5 462,275 + PGA1_c04700 0.22 -0.1 462,305 + PGA1_c04700 0.25 -0.3 462,481 - PGA1_c04700 0.44 +2.1 462,543 + PGA1_c04700 0.50 -0.1 462,551 - PGA1_c04700 0.51 +1.0 462,561 + PGA1_c04700 0.52 -0.8 462,603 - PGA1_c04700 0.57 +0.0 462,605 - PGA1_c04700 0.57 +0.1 462,651 - PGA1_c04700 0.62 +0.7 462,651 - PGA1_c04700 0.62 -0.1 462,651 - PGA1_c04700 0.62 -0.3 462,653 + PGA1_c04700 0.62 +0.4 462,763 - PGA1_c04700 0.73 +0.4 462,789 - PGA1_c04700 0.76 +0.5 462,789 - PGA1_c04700 0.76 -0.0 462,812 + PGA1_c04700 0.79 -0.1 462,815 - PGA1_c04700 0.79 +0.9 462,824 + PGA1_c04700 0.80 -1.4 462,824 + PGA1_c04700 0.80 +0.7 462,830 + PGA1_c04700 0.81 +1.7 462,832 - PGA1_c04700 0.81 +0.9 462,843 - PGA1_c04700 0.82 +0.4 462,847 + PGA1_c04700 0.82 +1.5 462,855 - PGA1_c04700 0.83 +0.1 462,872 - PGA1_c04700 0.85 -1.3 462,920 + -1.4 462,941 - -0.1 462,969 - +0.7 463,000 + -0.2 463,027 + +1.5 463,075 + +0.8 463,110 + +0.9 463,118 - -0.3 463,146 + -0.6 463,168 + -0.6 463,176 - -1.7 463,218 + PGA1_c04710 0.10 +0.4 463,226 + PGA1_c04710 0.11 -0.4 463,227 - PGA1_c04710 0.11 +0.1 463,270 - PGA1_c04710 0.14 -1.2 463,270 - PGA1_c04710 0.14 -0.3 463,275 - PGA1_c04710 0.15 +0.8 463,293 - PGA1_c04710 0.16 -0.4 463,331 + PGA1_c04710 0.19 +2.4 463,331 + PGA1_c04710 0.19 -1.3 463,445 + PGA1_c04710 0.28 +1.4 463,452 - PGA1_c04710 0.28 +0.6 463,453 + PGA1_c04710 0.28 +0.7 463,453 - PGA1_c04710 0.28 -0.2 463,453 - PGA1_c04710 0.28 -1.2 463,453 - PGA1_c04710 0.28 +1.5 463,453 - PGA1_c04710 0.28 -1.8 463,453 - PGA1_c04710 0.28 -0.1 463,520 - PGA1_c04710 0.33 +1.7 463,520 - PGA1_c04710 0.33 -0.3 463,523 + PGA1_c04710 0.33 +0.1 463,529 - PGA1_c04710 0.34 +1.2 463,584 + PGA1_c04710 0.38 -0.9 463,592 - PGA1_c04710 0.39 -0.6 463,639 + PGA1_c04710 0.42 -1.6 463,639 + PGA1_c04710 0.42 +0.0 463,655 + PGA1_c04710 0.43 +0.5 463,655 + PGA1_c04710 0.43 -0.5 463,733 + PGA1_c04710 0.49 -2.0 463,780 - PGA1_c04710 0.53 -1.2 463,837 + PGA1_c04710 0.57 -0.2 463,872 - PGA1_c04710 0.60 +1.0 463,874 + PGA1_c04710 0.60 -0.1 463,884 + PGA1_c04710 0.61 -0.6 463,892 - PGA1_c04710 0.61 +0.5 463,916 + PGA1_c04710 0.63 -0.6 463,917 - PGA1_c04710 0.63 -0.8 464,045 + PGA1_c04710 0.73 -0.8 464,052 - PGA1_c04710 0.73 -1.8 464,053 - PGA1_c04710 0.73 +0.0 464,053 - PGA1_c04710 0.73 -1.1 464,107 - PGA1_c04710 0.78 +0.1 464,206 + PGA1_c04710 0.85 +0.4 464,214 - PGA1_c04710 0.86 +0.3 464,214 - PGA1_c04710 0.86 +0.7 464,216 + PGA1_c04710 0.86 -0.7 464,224 - PGA1_c04710 0.86 +0.7 464,286 - -0.9 464,294 + -0.4 464,355 + -0.6 464,530 - -0.5 464,530 - +0.1 464,530 - -1.1 464,533 + +0.3 464,533 + +0.3 464,541 - +0.5 464,541 - +0.0 464,541 - -0.5 464,556 + +1.2 464,577 + +0.2 464,577 + +0.1 464,579 - +0.2 464,584 - -1.7 464,599 + +0.0 464,607 - +0.1 464,630 + -0.3 464,630 + +1.7 464,630 + +0.2 464,630 + -0.3 464,638 - +1.0 464,638 - -0.2 464,638 - -1.1 464,666 - PGA1_c04720 0.10 +1.2 464,666 - PGA1_c04720 0.10 -0.0 464,688 + PGA1_c04720 0.14 +0.9 464,696 - PGA1_c04720 0.16 -0.2 464,717 - PGA1_c04720 0.20 -0.2 464,730 - PGA1_c04720 0.22 -1.2 464,730 - PGA1_c04720 0.22 +1.7 464,757 - PGA1_c04720 0.27 -0.3 464,778 + PGA1_c04720 0.31 +0.5 464,833 + PGA1_c04720 0.41 -0.5 464,841 + PGA1_c04720 0.42 -0.2 464,868 - PGA1_c04720 0.47 +0.0 464,897 + PGA1_c04720 0.52 -0.1 464,905 - PGA1_c04720 0.54 -1.7 464,905 - PGA1_c04720 0.54 -0.1 464,905 - PGA1_c04720 0.54 -0.2 464,905 - PGA1_c04720 0.54 -0.6 464,905 - PGA1_c04720 0.54 +0.8 464,976 + PGA1_c04720 0.66 -0.0 464,984 - PGA1_c04720 0.68 -0.3 465,025 + PGA1_c04720 0.75 -0.2 465,057 + PGA1_c04720 0.81 -0.3 465,065 - PGA1_c04720 0.83 -0.4 465,070 + PGA1_c04720 0.84 +0.0 465,078 - PGA1_c04720 0.85 +0.2 465,130 - +0.5 465,154 + +0.9 465,162 - +0.9 465,162 - -0.7 465,164 + +0.1 465,195 + +0.4 465,201 - +0.4 465,267 + PGA1_c04730 0.31 +0.2 465,282 - PGA1_c04730 0.36 +0.4 465,287 - PGA1_c04730 0.38 +0.7 465,350 + PGA1_c04730 0.59 -0.2 465,401 + PGA1_c04730 0.76 +0.2
Or see this region's nucleotide sequence