Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4094

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4093 and Psest_4094 are separated by 155 nucleotidesPsest_4094 and Psest_4095 are separated by 164 nucleotidesPsest_4095 and Psest_4096 are separated by 125 nucleotides Psest_4093: Psest_4093 - ectoine hydroxylase, at 4,269,208 to 4,270,125 _4093 Psest_4094: Psest_4094 - Aspartokinases, at 4,270,281 to 4,271,711 _4094 Psest_4095: Psest_4095 - Uncharacterized protein conserved in bacteria, at 4,271,876 to 4,272,094 _4095 Psest_4096: Psest_4096 - Collagenase and related proteases, at 4,272,220 to 4,273,593 _4096 Position (kb) 4270 4271 4272Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4269.589 kb on + strand, within Psest_4093at 4269.589 kb on + strand, within Psest_4093at 4269.590 kb on - strand, within Psest_4093at 4269.644 kb on - strand, within Psest_4093at 4269.781 kb on + strand, within Psest_4093at 4269.781 kb on + strand, within Psest_4093at 4269.782 kb on - strand, within Psest_4093at 4269.782 kb on - strand, within Psest_4093at 4269.782 kb on - strand, within Psest_4093at 4269.782 kb on - strand, within Psest_4093at 4269.782 kb on - strand, within Psest_4093at 4269.782 kb on - strand, within Psest_4093at 4269.817 kb on + strand, within Psest_4093at 4270.000 kb on + strand, within Psest_4093at 4270.000 kb on + strand, within Psest_4093at 4270.000 kb on + strand, within Psest_4093at 4270.001 kb on - strand, within Psest_4093at 4270.001 kb on - strand, within Psest_4093at 4270.001 kb on - strand, within Psest_4093at 4270.001 kb on - strand, within Psest_4093at 4270.001 kb on - strand, within Psest_4093at 4270.006 kb on + strand, within Psest_4093at 4270.006 kb on + strand, within Psest_4093at 4270.006 kb on + strand, within Psest_4093at 4270.007 kb on - strand, within Psest_4093at 4270.007 kb on - strand, within Psest_4093at 4270.020 kb on + strand, within Psest_4093at 4270.117 kb on + strandat 4270.117 kb on + strandat 4270.117 kb on + strandat 4270.117 kb on + strandat 4270.117 kb on + strandat 4270.118 kb on - strandat 4270.118 kb on - strandat 4270.118 kb on - strandat 4270.118 kb on - strandat 4270.118 kb on - strandat 4270.274 kb on + strandat 4270.274 kb on + strandat 4270.274 kb on + strandat 4270.274 kb on + strandat 4270.274 kb on + strandat 4270.274 kb on + strandat 4270.274 kb on + strandat 4270.275 kb on - strandat 4270.275 kb on - strandat 4270.275 kb on - strandat 4270.275 kb on - strandat 4270.276 kb on + strandat 4270.276 kb on + strandat 4270.276 kb on + strandat 4270.276 kb on + strandat 4270.276 kb on + strandat 4270.276 kb on + strandat 4270.276 kb on + strandat 4270.277 kb on - strandat 4270.277 kb on - strandat 4270.277 kb on - strandat 4270.277 kb on - strandat 4270.277 kb on - strandat 4270.277 kb on - strandat 4270.286 kb on + strandat 4270.286 kb on + strandat 4270.287 kb on - strandat 4270.291 kb on + strandat 4270.291 kb on + strandat 4270.343 kb on + strandat 4270.344 kb on - strandat 4270.378 kb on - strandat 4270.378 kb on - strandat 4270.378 kb on - strandat 4270.404 kb on + strandat 4270.404 kb on + strandat 4270.404 kb on + strandat 4270.405 kb on - strandat 4270.461 kb on + strand, within Psest_4094at 4270.462 kb on - strand, within Psest_4094at 4270.889 kb on + strand, within Psest_4094at 4270.889 kb on + strand, within Psest_4094at 4270.889 kb on + strand, within Psest_4094at 4270.889 kb on + strand, within Psest_4094at 4270.890 kb on - strand, within Psest_4094at 4270.890 kb on - strand, within Psest_4094at 4270.920 kb on + strand, within Psest_4094at 4270.920 kb on + strand, within Psest_4094at 4270.920 kb on + strand, within Psest_4094at 4270.920 kb on + strand, within Psest_4094at 4270.920 kb on + strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4270.921 kb on - strand, within Psest_4094at 4271.070 kb on + strand, within Psest_4094at 4271.070 kb on + strand, within Psest_4094at 4271.070 kb on + strand, within Psest_4094at 4271.070 kb on + strand, within Psest_4094at 4271.071 kb on - strand, within Psest_4094at 4271.071 kb on - strand, within Psest_4094at 4271.071 kb on - strand, within Psest_4094at 4271.071 kb on - strand, within Psest_4094at 4271.214 kb on + strand, within Psest_4094at 4271.214 kb on + strand, within Psest_4094at 4271.215 kb on - strand, within Psest_4094at 4271.352 kb on + strand, within Psest_4094at 4271.352 kb on + strand, within Psest_4094at 4271.352 kb on + strand, within Psest_4094at 4271.352 kb on + strand, within Psest_4094at 4271.352 kb on + strand, within Psest_4094at 4271.352 kb on + strand, within Psest_4094at 4271.353 kb on - strand, within Psest_4094at 4271.353 kb on - strand, within Psest_4094at 4271.353 kb on - strand, within Psest_4094at 4271.353 kb on - strand, within Psest_4094at 4271.391 kb on + strand, within Psest_4094at 4271.391 kb on + strand, within Psest_4094at 4271.391 kb on + strand, within Psest_4094at 4271.392 kb on - strand, within Psest_4094at 4271.392 kb on - strand, within Psest_4094at 4271.394 kb on + strand, within Psest_4094at 4271.395 kb on - strand, within Psest_4094at 4271.634 kb on + strandat 4271.634 kb on + strandat 4271.634 kb on + strandat 4271.635 kb on - strandat 4271.635 kb on - strandat 4271.635 kb on - strandat 4271.635 kb on - strandat 4271.635 kb on - strandat 4271.805 kb on - strandat 4271.860 kb on + strandat 4271.860 kb on + strandat 4271.861 kb on - strandat 4271.910 kb on + strand, within Psest_4095at 4271.911 kb on - strand, within Psest_4095at 4272.062 kb on + strand, within Psest_4095at 4272.063 kb on - strand, within Psest_4095at 4272.063 kb on - strand, within Psest_4095at 4272.310 kb on + strandat 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.415 kb on + strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.416 kb on - strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.419 kb on + strand, within Psest_4096at 4272.420 kb on - strand, within Psest_4096at 4272.420 kb on - strand, within Psest_4096at 4272.420 kb on - strand, within Psest_4096at 4272.420 kb on - strand, within Psest_4096at 4272.420 kb on - strand, within Psest_4096

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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4,269,589 + Psest_4093 0.42 -0.3
4,269,589 + Psest_4093 0.42 +1.0
4,269,590 - Psest_4093 0.42 +0.1
4,269,644 - Psest_4093 0.47 +2.6
4,269,781 + Psest_4093 0.62 +0.7
4,269,781 + Psest_4093 0.62 +2.5
4,269,782 - Psest_4093 0.63 +0.8
4,269,782 - Psest_4093 0.63 +0.8
4,269,782 - Psest_4093 0.63 +0.4
4,269,782 - Psest_4093 0.63 -0.8
4,269,782 - Psest_4093 0.63 -0.7
4,269,782 - Psest_4093 0.63 -1.2
4,269,817 + Psest_4093 0.66 -1.3
4,270,000 + Psest_4093 0.86 +0.8
4,270,000 + Psest_4093 0.86 -0.1
4,270,000 + Psest_4093 0.86 -0.5
4,270,001 - Psest_4093 0.86 +0.9
4,270,001 - Psest_4093 0.86 +0.3
4,270,001 - Psest_4093 0.86 +0.9
4,270,001 - Psest_4093 0.86 +0.7
4,270,001 - Psest_4093 0.86 -0.3
4,270,006 + Psest_4093 0.87 +1.7
4,270,006 + Psest_4093 0.87 +0.0
4,270,006 + Psest_4093 0.87 -1.2
4,270,007 - Psest_4093 0.87 +0.8
4,270,007 - Psest_4093 0.87 -0.3
4,270,020 + Psest_4093 0.88 +1.3
4,270,117 + +0.2
4,270,117 + -0.2
4,270,117 + -0.2
4,270,117 + +1.0
4,270,117 + -0.2
4,270,118 - +1.4
4,270,118 - -0.6
4,270,118 - -0.9
4,270,118 - +0.3
4,270,118 - -1.7
4,270,274 + -1.1
4,270,274 + +0.1
4,270,274 + -0.3
4,270,274 + +0.3
4,270,274 + +0.1
4,270,274 + +1.0
4,270,274 + +0.3
4,270,275 - -1.1
4,270,275 - -0.1
4,270,275 - -0.2
4,270,275 - +1.1
4,270,276 + +0.7
4,270,276 + +1.1
4,270,276 + +0.8
4,270,276 + +0.0
4,270,276 + -0.1
4,270,276 + -0.3
4,270,276 + +0.7
4,270,277 - -0.6
4,270,277 - -0.9
4,270,277 - -0.1
4,270,277 - +0.4
4,270,277 - +0.4
4,270,277 - -1.5
4,270,286 + -0.0
4,270,286 + +0.4
4,270,287 - +0.6
4,270,291 + -3.2
4,270,291 + -0.3
4,270,343 + -0.1
4,270,344 - +0.1
4,270,378 - +1.7
4,270,378 - +0.8
4,270,378 - -0.1
4,270,404 + -0.3
4,270,404 + -1.7
4,270,404 + -1.3
4,270,405 - -0.6
4,270,461 + Psest_4094 0.13 -0.1
4,270,462 - Psest_4094 0.13 -0.5
4,270,889 + Psest_4094 0.42 -0.1
4,270,889 + Psest_4094 0.42 -0.4
4,270,889 + Psest_4094 0.42 -0.3
4,270,889 + Psest_4094 0.42 -0.3
4,270,890 - Psest_4094 0.43 -1.3
4,270,890 - Psest_4094 0.43 -1.8
4,270,920 + Psest_4094 0.45 -0.4
4,270,920 + Psest_4094 0.45 -1.4
4,270,920 + Psest_4094 0.45 +1.4
4,270,920 + Psest_4094 0.45 +0.5
4,270,920 + Psest_4094 0.45 -1.2
4,270,921 - Psest_4094 0.45 +0.3
4,270,921 - Psest_4094 0.45 +0.7
4,270,921 - Psest_4094 0.45 +0.6
4,270,921 - Psest_4094 0.45 +0.4
4,270,921 - Psest_4094 0.45 -0.7
4,270,921 - Psest_4094 0.45 +0.9
4,270,921 - Psest_4094 0.45 -0.1
4,271,070 + Psest_4094 0.55 +0.1
4,271,070 + Psest_4094 0.55 +0.6
4,271,070 + Psest_4094 0.55 +0.3
4,271,070 + Psest_4094 0.55 +0.5
4,271,071 - Psest_4094 0.55 -0.2
4,271,071 - Psest_4094 0.55 +0.3
4,271,071 - Psest_4094 0.55 +0.8
4,271,071 - Psest_4094 0.55 +0.1
4,271,214 + Psest_4094 0.65 -0.3
4,271,214 + Psest_4094 0.65 +0.4
4,271,215 - Psest_4094 0.65 +0.3
4,271,352 + Psest_4094 0.75 -0.1
4,271,352 + Psest_4094 0.75 -0.0
4,271,352 + Psest_4094 0.75 -0.0
4,271,352 + Psest_4094 0.75 +0.6
4,271,352 + Psest_4094 0.75 -0.7
4,271,352 + Psest_4094 0.75 +0.5
4,271,353 - Psest_4094 0.75 -2.3
4,271,353 - Psest_4094 0.75 +0.8
4,271,353 - Psest_4094 0.75 -0.2
4,271,353 - Psest_4094 0.75 -0.5
4,271,391 + Psest_4094 0.78 +0.5
4,271,391 + Psest_4094 0.78 +0.1
4,271,391 + Psest_4094 0.78 +0.6
4,271,392 - Psest_4094 0.78 -0.1
4,271,392 - Psest_4094 0.78 -0.6
4,271,394 + Psest_4094 0.78 +1.0
4,271,395 - Psest_4094 0.78 -0.3
4,271,634 + +1.1
4,271,634 + +1.4
4,271,634 + -0.7
4,271,635 - +0.4
4,271,635 - -1.2
4,271,635 - +0.1
4,271,635 - -0.1
4,271,635 - +0.1
4,271,805 - +0.9
4,271,860 + +1.3
4,271,860 + -0.0
4,271,861 - +0.4
4,271,910 + Psest_4095 0.16 -1.4
4,271,911 - Psest_4095 0.16 -0.0
4,272,062 + Psest_4095 0.85 +0.2
4,272,063 - Psest_4095 0.85 -0.8
4,272,063 - Psest_4095 0.85 -0.3
4,272,310 + +0.7
4,272,415 + Psest_4096 0.14 +0.3
4,272,415 + Psest_4096 0.14 -0.1
4,272,415 + Psest_4096 0.14 +0.0
4,272,415 + Psest_4096 0.14 +0.2
4,272,415 + Psest_4096 0.14 +0.7
4,272,415 + Psest_4096 0.14 +1.0
4,272,415 + Psest_4096 0.14 -0.9
4,272,415 + Psest_4096 0.14 +1.1
4,272,415 + Psest_4096 0.14 +0.1
4,272,415 + Psest_4096 0.14 -0.9
4,272,415 + Psest_4096 0.14 -0.4
4,272,415 + Psest_4096 0.14 +0.2
4,272,415 + Psest_4096 0.14 +1.3
4,272,415 + Psest_4096 0.14 +0.7
4,272,415 + Psest_4096 0.14 -0.5
4,272,415 + Psest_4096 0.14 -0.8
4,272,416 - Psest_4096 0.14 -0.9
4,272,416 - Psest_4096 0.14 +1.0
4,272,416 - Psest_4096 0.14 +0.5
4,272,416 - Psest_4096 0.14 +0.2
4,272,416 - Psest_4096 0.14 +1.7
4,272,416 - Psest_4096 0.14 +0.1
4,272,416 - Psest_4096 0.14 +0.2
4,272,416 - Psest_4096 0.14 -0.1
4,272,416 - Psest_4096 0.14 +1.0
4,272,416 - Psest_4096 0.14 +0.4
4,272,416 - Psest_4096 0.14 +0.4
4,272,416 - Psest_4096 0.14 -0.1
4,272,416 - Psest_4096 0.14 +0.5
4,272,416 - Psest_4096 0.14 +2.3
4,272,416 - Psest_4096 0.14 -0.7
4,272,416 - Psest_4096 0.14 -0.0
4,272,416 - Psest_4096 0.14 -0.3
4,272,419 + Psest_4096 0.14 +0.9
4,272,419 + Psest_4096 0.14 +0.4
4,272,419 + Psest_4096 0.14 -1.0
4,272,419 + Psest_4096 0.14 +1.8
4,272,419 + Psest_4096 0.14 +0.8
4,272,419 + Psest_4096 0.14 +0.1
4,272,419 + Psest_4096 0.14 -0.1
4,272,420 - Psest_4096 0.15 +0.6
4,272,420 - Psest_4096 0.15 -0.4
4,272,420 - Psest_4096 0.15 -1.0
4,272,420 - Psest_4096 0.15 -0.0
4,272,420 - Psest_4096 0.15 -0.2

Or see this region's nucleotide sequence