Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00390 and PGA1_65p00400 are separated by 148 nucleotides PGA1_65p00400 and PGA1_65p00410 are separated by 17 nucleotides PGA1_65p00410 and PGA1_65p00420 are separated by 116 nucleotides
PGA1_65p00390: PGA1_65p00390 - UDP-galactopyranose mutase Glf, at 53,848 to 55,011
_65p00390
PGA1_65p00400: PGA1_65p00400 - ABC transporter, ATP-binding protein, at 55,160 to 55,816
_65p00400
PGA1_65p00410: PGA1_65p00410 - putative olysaccharide export protein, at 55,834 to 57,264
_65p00410
PGA1_65p00420: PGA1_65p00420 - putative ABC type transporter, at 57,381 to 58,289
_65p00420
Position (kb) 55
56
57
58 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.896 kb on - strand at 54.912 kb on + strand at 54.945 kb on - strand at 54.992 kb on + strand at 55.006 kb on + strand at 55.028 kb on - strand at 55.202 kb on - strand at 55.227 kb on + strand, within PGA1_65p00400 at 55.568 kb on + strand, within PGA1_65p00400 at 55.664 kb on - strand, within PGA1_65p00400 at 55.668 kb on + strand, within PGA1_65p00400 at 55.890 kb on - strand at 55.911 kb on - strand at 55.992 kb on - strand, within PGA1_65p00410 at 56.313 kb on - strand, within PGA1_65p00410 at 56.593 kb on + strand, within PGA1_65p00410 at 56.641 kb on - strand, within PGA1_65p00410 at 56.820 kb on + strand, within PGA1_65p00410 at 56.829 kb on - strand, within PGA1_65p00410 at 57.037 kb on - strand, within PGA1_65p00410 at 57.119 kb on + strand, within PGA1_65p00410 at 57.224 kb on - strand at 57.295 kb on + strand at 57.295 kb on + strand at 57.419 kb on - strand at 57.451 kb on + strand at 57.454 kb on - strand at 57.485 kb on - strand, within PGA1_65p00420 at 57.634 kb on - strand, within PGA1_65p00420 at 57.748 kb on - strand, within PGA1_65p00420 at 57.784 kb on - strand, within PGA1_65p00420 at 57.784 kb on - strand, within PGA1_65p00420 at 58.026 kb on + strand, within PGA1_65p00420 at 58.034 kb on - strand, within PGA1_65p00420 at 58.106 kb on + strand, within PGA1_65p00420 at 58.186 kb on - strand, within PGA1_65p00420 at 58.196 kb on - strand, within PGA1_65p00420
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 54,896 - +1.1 54,912 + -1.3 54,945 - -0.3 54,992 + +1.5 55,006 + +1.3 55,028 - +0.7 55,202 - +1.3 55,227 + PGA1_65p00400 0.10 -0.3 55,568 + PGA1_65p00400 0.62 +0.7 55,664 - PGA1_65p00400 0.77 -0.8 55,668 + PGA1_65p00400 0.77 -0.3 55,890 - -0.7 55,911 - +0.7 55,992 - PGA1_65p00410 0.11 -0.3 56,313 - PGA1_65p00410 0.33 -0.8 56,593 + PGA1_65p00410 0.53 -1.3 56,641 - PGA1_65p00410 0.56 -3.4 56,820 + PGA1_65p00410 0.69 +0.3 56,829 - PGA1_65p00410 0.70 -2.3 57,037 - PGA1_65p00410 0.84 +2.5 57,119 + PGA1_65p00410 0.90 -1.3 57,224 - -1.8 57,295 + +1.3 57,295 + +0.3 57,419 - -0.3 57,451 + +1.3 57,454 - -0.3 57,485 - PGA1_65p00420 0.11 -0.8 57,634 - PGA1_65p00420 0.28 -1.8 57,748 - PGA1_65p00420 0.40 -3.1 57,784 - PGA1_65p00420 0.44 -2.3 57,784 - PGA1_65p00420 0.44 -1.8 58,026 + PGA1_65p00420 0.71 +0.1 58,034 - PGA1_65p00420 0.72 -0.3 58,106 + PGA1_65p00420 0.80 +2.1 58,186 - PGA1_65p00420 0.89 -0.7 58,196 - PGA1_65p00420 0.90 +1.7
Or see this region's nucleotide sequence