Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00390 and PGA1_65p00400 are separated by 148 nucleotides PGA1_65p00400 and PGA1_65p00410 are separated by 17 nucleotides
PGA1_65p00390: PGA1_65p00390 - UDP-galactopyranose mutase Glf, at 53,848 to 55,011
_65p00390
PGA1_65p00400: PGA1_65p00400 - ABC transporter, ATP-binding protein, at 55,160 to 55,816
_65p00400
PGA1_65p00410: PGA1_65p00410 - putative olysaccharide export protein, at 55,834 to 57,264
_65p00410
Position (kb) 55
56 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 54.174 kb on - strand, within PGA1_65p00390 at 54.319 kb on + strand, within PGA1_65p00390 at 54.407 kb on + strand, within PGA1_65p00390 at 54.415 kb on - strand, within PGA1_65p00390 at 54.601 kb on + strand, within PGA1_65p00390 at 54.631 kb on - strand, within PGA1_65p00390 at 54.633 kb on + strand, within PGA1_65p00390 at 54.641 kb on - strand, within PGA1_65p00390 at 54.668 kb on - strand, within PGA1_65p00390 at 54.762 kb on - strand, within PGA1_65p00390 at 54.788 kb on + strand, within PGA1_65p00390 at 54.816 kb on + strand, within PGA1_65p00390 at 54.896 kb on - strand at 54.912 kb on + strand at 54.945 kb on - strand at 54.992 kb on + strand at 55.006 kb on + strand at 55.028 kb on - strand at 55.202 kb on - strand at 55.227 kb on + strand, within PGA1_65p00400 at 55.568 kb on + strand, within PGA1_65p00400 at 55.664 kb on - strand, within PGA1_65p00400 at 55.668 kb on + strand, within PGA1_65p00400 at 55.890 kb on - strand at 55.911 kb on - strand at 55.992 kb on - strand, within PGA1_65p00410 at 56.313 kb on - strand, within PGA1_65p00410 at 56.593 kb on + strand, within PGA1_65p00410 at 56.641 kb on - strand, within PGA1_65p00410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 54,174 - PGA1_65p00390 0.28 +1.3 54,319 + PGA1_65p00390 0.40 -0.5 54,407 + PGA1_65p00390 0.48 -0.3 54,415 - PGA1_65p00390 0.49 -2.3 54,601 + PGA1_65p00390 0.65 -0.8 54,631 - PGA1_65p00390 0.67 +2.1 54,633 + PGA1_65p00390 0.67 +0.7 54,641 - PGA1_65p00390 0.68 +1.7 54,668 - PGA1_65p00390 0.70 +1.7 54,762 - PGA1_65p00390 0.79 -0.3 54,788 + PGA1_65p00390 0.81 -1.5 54,816 + PGA1_65p00390 0.83 +1.2 54,896 - +1.1 54,912 + -1.3 54,945 - -0.3 54,992 + +1.5 55,006 + +1.3 55,028 - +0.7 55,202 - +1.3 55,227 + PGA1_65p00400 0.10 -0.3 55,568 + PGA1_65p00400 0.62 +0.7 55,664 - PGA1_65p00400 0.77 -0.8 55,668 + PGA1_65p00400 0.77 -0.3 55,890 - -0.7 55,911 - +0.7 55,992 - PGA1_65p00410 0.11 -0.3 56,313 - PGA1_65p00410 0.33 -0.8 56,593 + PGA1_65p00410 0.53 -1.3 56,641 - PGA1_65p00410 0.56 -3.4
Or see this region's nucleotide sequence