Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_65p00260

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_65p00240 and PGA1_65p00250 are separated by 3 nucleotidesPGA1_65p00250 and PGA1_65p00260 are separated by 129 nucleotidesPGA1_65p00260 and PGA1_65p00270 are separated by 68 nucleotides PGA1_65p00240: PGA1_65p00240 - dTDP-glucose 4,6-dehydratase RffG, at 30,754 to 31,806 _65p00240 PGA1_65p00250: PGA1_65p00250 - dTDP-4-dehydrorhamnose 3,5-epimerase RfbC, at 31,810 to 32,445 _65p00250 PGA1_65p00260: PGA1_65p00260 - putative metallopeptidase, at 32,575 to 34,026 _65p00260 PGA1_65p00270: PGA1_65p00270 - Hemolysin-type calcium-binding repeat (2 copies)., at 34,095 to 36,314 _65p00270 Position (kb) 32 33 34 35Strain fitness (log2 ratio) -3 -2 -1 0 1at 31.652 kb on - strand, within PGA1_65p00240at 31.698 kb on + strand, within PGA1_65p00240at 31.969 kb on + strand, within PGA1_65p00250at 32.372 kb on + strand, within PGA1_65p00250at 32.380 kb on - strand, within PGA1_65p00250at 32.393 kb on + strandat 32.456 kb on + strandat 32.464 kb on - strandat 32.469 kb on - strandat 32.537 kb on + strandat 32.574 kb on + strandat 32.632 kb on - strandat 32.805 kb on - strand, within PGA1_65p00260at 32.851 kb on + strand, within PGA1_65p00260at 32.859 kb on - strand, within PGA1_65p00260at 33.046 kb on + strand, within PGA1_65p00260at 33.051 kb on + strand, within PGA1_65p00260at 33.082 kb on - strand, within PGA1_65p00260at 33.104 kb on + strand, within PGA1_65p00260at 33.112 kb on - strand, within PGA1_65p00260at 33.154 kb on + strand, within PGA1_65p00260at 33.177 kb on - strand, within PGA1_65p00260at 33.182 kb on - strand, within PGA1_65p00260at 33.320 kb on + strand, within PGA1_65p00260at 33.518 kb on + strand, within PGA1_65p00260at 33.526 kb on - strand, within PGA1_65p00260at 33.553 kb on + strand, within PGA1_65p00260at 33.604 kb on + strand, within PGA1_65p00260at 33.645 kb on + strand, within PGA1_65p00260at 33.999 kb on + strandat 34.052 kb on + strandat 34.697 kb on - strand, within PGA1_65p00270at 34.969 kb on - strand, within PGA1_65p00270at 35.002 kb on - strand, within PGA1_65p00270at 35.002 kb on - strand, within PGA1_65p00270at 35.004 kb on + strand, within PGA1_65p00270at 35.004 kb on + strand, within PGA1_65p00270at 35.004 kb on + strand, within PGA1_65p00270at 35.004 kb on + strand, within PGA1_65p00270at 35.012 kb on - strand, within PGA1_65p00270at 35.012 kb on - strand, within PGA1_65p00270at 35.012 kb on - strand, within PGA1_65p00270at 35.012 kb on - strand, within PGA1_65p00270at 35.012 kb on - strand, within PGA1_65p00270at 35.012 kb on - strand, within PGA1_65p00270

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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31,652 - PGA1_65p00240 0.85 -1.0
31,698 + PGA1_65p00240 0.90 -1.3
31,969 + PGA1_65p00250 0.25 -2.8
32,372 + PGA1_65p00250 0.88 +0.7
32,380 - PGA1_65p00250 0.90 -0.3
32,393 + +0.7
32,456 + -0.3
32,464 - -0.8
32,469 - -0.3
32,537 + -0.3
32,574 + -0.5
32,632 - +0.3
32,805 - PGA1_65p00260 0.16 -0.3
32,851 + PGA1_65p00260 0.19 -1.3
32,859 - PGA1_65p00260 0.20 +0.7
33,046 + PGA1_65p00260 0.32 +0.7
33,051 + PGA1_65p00260 0.33 -0.3
33,082 - PGA1_65p00260 0.35 +0.7
33,104 + PGA1_65p00260 0.36 +0.3
33,112 - PGA1_65p00260 0.37 +0.3
33,154 + PGA1_65p00260 0.40 -0.3
33,177 - PGA1_65p00260 0.41 -0.3
33,182 - PGA1_65p00260 0.42 -1.3
33,320 + PGA1_65p00260 0.51 -1.8
33,518 + PGA1_65p00260 0.65 -1.3
33,526 - PGA1_65p00260 0.65 -1.6
33,553 + PGA1_65p00260 0.67 -1.3
33,604 + PGA1_65p00260 0.71 -1.3
33,645 + PGA1_65p00260 0.74 -1.3
33,999 + -0.3
34,052 + -0.3
34,697 - PGA1_65p00270 0.27 -0.3
34,969 - PGA1_65p00270 0.39 +0.7
35,002 - PGA1_65p00270 0.41 -1.8
35,002 - PGA1_65p00270 0.41 -0.3
35,004 + PGA1_65p00270 0.41 -0.3
35,004 + PGA1_65p00270 0.41 -0.3
35,004 + PGA1_65p00270 0.41 +0.7
35,004 + PGA1_65p00270 0.41 +0.7
35,012 - PGA1_65p00270 0.41 -1.3
35,012 - PGA1_65p00270 0.41 -0.3
35,012 - PGA1_65p00270 0.41 -0.3
35,012 - PGA1_65p00270 0.41 -0.3
35,012 - PGA1_65p00270 0.41 -0.3
35,012 - PGA1_65p00270 0.41 -1.3

Or see this region's nucleotide sequence