Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02130 and PGA1_262p02140 overlap by 4 nucleotides PGA1_262p02140 and PGA1_262p02150 are separated by 273 nucleotides PGA1_262p02150 and PGA1_262p02160 are separated by 94 nucleotides
PGA1_262p02130: PGA1_262p02130 - response regulator receiver, at 230,367 to 230,741
_262p02130
PGA1_262p02140: PGA1_262p02140 - hypothetical protein, at 230,738 to 231,142
_262p02140
PGA1_262p02150: PGA1_262p02150 - methyl-accepting chemotaxis protein I, at 231,416 to 233,815
_262p02150
PGA1_262p02160: PGA1_262p02160 - putative chemotaxis response regulator protein-glutamate methylesterase, at 233,910 to 234,914
_262p02160
Position (kb) 231
232
233
234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 230.477 kb on - strand, within PGA1_262p02130 at 230.533 kb on + strand, within PGA1_262p02130 at 230.552 kb on + strand, within PGA1_262p02130 at 230.552 kb on + strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.560 kb on - strand, within PGA1_262p02130 at 230.597 kb on - strand, within PGA1_262p02130 at 230.622 kb on + strand, within PGA1_262p02130 at 230.622 kb on + strand, within PGA1_262p02130 at 230.630 kb on - strand, within PGA1_262p02130 at 230.640 kb on + strand, within PGA1_262p02130 at 230.645 kb on - strand, within PGA1_262p02130 at 230.655 kb on - strand, within PGA1_262p02130 at 230.672 kb on + strand, within PGA1_262p02130 at 230.865 kb on - strand, within PGA1_262p02140 at 230.875 kb on + strand, within PGA1_262p02140 at 230.883 kb on - strand, within PGA1_262p02140 at 230.928 kb on + strand, within PGA1_262p02140 at 230.928 kb on + strand, within PGA1_262p02140 at 230.928 kb on + strand, within PGA1_262p02140 at 230.936 kb on - strand, within PGA1_262p02140 at 230.952 kb on + strand, within PGA1_262p02140 at 230.979 kb on - strand, within PGA1_262p02140 at 230.982 kb on + strand, within PGA1_262p02140 at 230.982 kb on + strand, within PGA1_262p02140 at 230.982 kb on + strand, within PGA1_262p02140 at 230.982 kb on + strand, within PGA1_262p02140 at 230.989 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.990 kb on - strand, within PGA1_262p02140 at 230.992 kb on + strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.000 kb on - strand, within PGA1_262p02140 at 231.067 kb on - strand, within PGA1_262p02140 at 231.075 kb on + strand, within PGA1_262p02140 at 231.213 kb on + strand at 231.245 kb on - strand at 231.250 kb on + strand at 231.252 kb on + strand at 231.272 kb on + strand at 231.279 kb on - strand at 231.282 kb on - strand at 231.371 kb on - strand at 231.371 kb on - strand at 231.381 kb on + strand at 231.389 kb on - strand at 231.402 kb on + strand at 231.402 kb on + strand at 231.455 kb on + strand at 231.458 kb on - strand at 231.478 kb on - strand at 231.505 kb on + strand at 231.518 kb on - strand at 231.570 kb on - strand at 231.585 kb on - strand at 231.632 kb on - strand at 231.632 kb on - strand at 231.638 kb on - strand at 231.643 kb on + strand at 231.669 kb on + strand, within PGA1_262p02150 at 231.681 kb on + strand, within PGA1_262p02150 at 231.691 kb on + strand, within PGA1_262p02150 at 231.699 kb on - strand, within PGA1_262p02150 at 231.699 kb on - strand, within PGA1_262p02150 at 231.724 kb on + strand, within PGA1_262p02150 at 231.734 kb on - strand, within PGA1_262p02150 at 231.800 kb on + strand, within PGA1_262p02150 at 231.808 kb on - strand, within PGA1_262p02150 at 231.817 kb on + strand, within PGA1_262p02150 at 231.825 kb on - strand, within PGA1_262p02150 at 231.842 kb on + strand, within PGA1_262p02150 at 231.850 kb on - strand, within PGA1_262p02150 at 231.882 kb on - strand, within PGA1_262p02150 at 231.898 kb on - strand, within PGA1_262p02150 at 231.927 kb on + strand, within PGA1_262p02150 at 231.935 kb on - strand, within PGA1_262p02150 at 231.935 kb on - strand, within PGA1_262p02150 at 231.937 kb on + strand, within PGA1_262p02150 at 231.982 kb on - strand, within PGA1_262p02150 at 232.181 kb on + strand, within PGA1_262p02150 at 232.241 kb on - strand, within PGA1_262p02150 at 232.333 kb on + strand, within PGA1_262p02150 at 232.403 kb on + strand, within PGA1_262p02150 at 232.403 kb on + strand, within PGA1_262p02150 at 232.403 kb on + strand, within PGA1_262p02150 at 232.403 kb on + strand, within PGA1_262p02150 at 232.403 kb on + strand, within PGA1_262p02150 at 232.403 kb on + strand, within PGA1_262p02150 at 232.403 kb on + strand, within PGA1_262p02150 at 232.403 kb on + strand, within PGA1_262p02150 at 232.403 kb on + strand, within PGA1_262p02150 at 232.403 kb on + strand, within PGA1_262p02150 at 232.403 kb on + strand, within PGA1_262p02150 at 232.411 kb on - strand, within PGA1_262p02150 at 232.411 kb on - strand, within PGA1_262p02150 at 232.411 kb on - strand, within PGA1_262p02150 at 232.411 kb on - strand, within PGA1_262p02150 at 232.411 kb on - strand, within PGA1_262p02150 at 232.411 kb on - strand, within PGA1_262p02150 at 232.411 kb on - strand, within PGA1_262p02150 at 232.411 kb on - strand, within PGA1_262p02150 at 232.411 kb on - strand, within PGA1_262p02150 at 232.411 kb on - strand, within PGA1_262p02150 at 232.411 kb on - strand, within PGA1_262p02150 at 232.413 kb on + strand, within PGA1_262p02150 at 232.639 kb on + strand, within PGA1_262p02150 at 232.639 kb on - strand, within PGA1_262p02150 at 232.682 kb on - strand, within PGA1_262p02150 at 232.682 kb on - strand, within PGA1_262p02150 at 232.729 kb on + strand, within PGA1_262p02150 at 232.729 kb on + strand, within PGA1_262p02150 at 232.734 kb on + strand, within PGA1_262p02150 at 232.734 kb on + strand, within PGA1_262p02150 at 232.734 kb on + strand, within PGA1_262p02150 at 232.734 kb on + strand, within PGA1_262p02150 at 232.737 kb on - strand, within PGA1_262p02150 at 232.739 kb on + strand, within PGA1_262p02150 at 232.742 kb on - strand, within PGA1_262p02150 at 232.742 kb on - strand, within PGA1_262p02150 at 232.742 kb on - strand, within PGA1_262p02150 at 232.742 kb on - strand, within PGA1_262p02150 at 232.851 kb on - strand, within PGA1_262p02150 at 233.928 kb on - strand at 233.967 kb on - strand at 234.061 kb on - strand, within PGA1_262p02160 at 234.065 kb on - strand, within PGA1_262p02160 at 234.072 kb on + strand, within PGA1_262p02160 at 234.126 kb on + strand, within PGA1_262p02160 at 234.151 kb on - strand, within PGA1_262p02160 at 234.339 kb on + strand, within PGA1_262p02160 at 234.401 kb on - strand, within PGA1_262p02160 at 234.418 kb on - strand, within PGA1_262p02160 at 234.428 kb on - strand, within PGA1_262p02160 at 234.515 kb on + strand, within PGA1_262p02160 at 234.523 kb on - strand, within PGA1_262p02160 at 234.590 kb on + strand, within PGA1_262p02160 at 234.590 kb on + strand, within PGA1_262p02160 at 234.599 kb on - strand, within PGA1_262p02160 at 234.609 kb on - strand, within PGA1_262p02160 at 234.623 kb on + strand, within PGA1_262p02160 at 234.623 kb on + strand, within PGA1_262p02160 at 234.631 kb on - strand, within PGA1_262p02160 at 234.684 kb on + strand, within PGA1_262p02160 at 234.684 kb on + strand, within PGA1_262p02160 at 234.692 kb on - strand, within PGA1_262p02160 at 234.692 kb on - strand, within PGA1_262p02160 at 234.732 kb on + strand, within PGA1_262p02160 at 234.735 kb on - strand, within PGA1_262p02160 at 234.740 kb on - strand, within PGA1_262p02160 at 234.752 kb on - strand, within PGA1_262p02160 at 234.785 kb on - strand, within PGA1_262p02160 at 234.785 kb on - strand, within PGA1_262p02160
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 230,477 - PGA1_262p02130 0.29 -1.4 230,533 + PGA1_262p02130 0.44 -0.2 230,552 + PGA1_262p02130 0.49 -0.9 230,552 + PGA1_262p02130 0.49 +0.7 230,560 - PGA1_262p02130 0.51 -0.2 230,560 - PGA1_262p02130 0.51 -1.6 230,560 - PGA1_262p02130 0.51 -0.8 230,560 - PGA1_262p02130 0.51 +0.0 230,560 - PGA1_262p02130 0.51 +0.6 230,597 - PGA1_262p02130 0.61 -0.1 230,622 + PGA1_262p02130 0.68 -0.0 230,622 + PGA1_262p02130 0.68 -1.0 230,630 - PGA1_262p02130 0.70 -0.5 230,640 + PGA1_262p02130 0.73 +0.2 230,645 - PGA1_262p02130 0.74 +1.2 230,655 - PGA1_262p02130 0.77 -0.7 230,672 + PGA1_262p02130 0.81 +1.2 230,865 - PGA1_262p02140 0.31 -1.8 230,875 + PGA1_262p02140 0.34 -0.5 230,883 - PGA1_262p02140 0.36 -2.2 230,928 + PGA1_262p02140 0.47 +0.2 230,928 + PGA1_262p02140 0.47 -0.5 230,928 + PGA1_262p02140 0.47 +2.4 230,936 - PGA1_262p02140 0.49 +0.1 230,952 + PGA1_262p02140 0.53 +0.5 230,979 - PGA1_262p02140 0.60 -0.6 230,982 + PGA1_262p02140 0.60 -0.4 230,982 + PGA1_262p02140 0.60 -1.2 230,982 + PGA1_262p02140 0.60 +0.1 230,982 + PGA1_262p02140 0.60 -1.2 230,989 - PGA1_262p02140 0.62 -0.5 230,990 - PGA1_262p02140 0.62 +1.5 230,990 - PGA1_262p02140 0.62 +1.4 230,990 - PGA1_262p02140 0.62 -0.8 230,990 - PGA1_262p02140 0.62 +0.3 230,990 - PGA1_262p02140 0.62 +0.4 230,990 - PGA1_262p02140 0.62 -0.0 230,990 - PGA1_262p02140 0.62 -1.8 230,992 + PGA1_262p02140 0.63 +0.5 231,000 - PGA1_262p02140 0.65 -0.8 231,000 - PGA1_262p02140 0.65 -0.8 231,000 - PGA1_262p02140 0.65 -0.5 231,000 - PGA1_262p02140 0.65 +1.5 231,000 - PGA1_262p02140 0.65 -0.2 231,000 - PGA1_262p02140 0.65 +1.0 231,000 - PGA1_262p02140 0.65 -0.2 231,000 - PGA1_262p02140 0.65 +0.6 231,067 - PGA1_262p02140 0.81 +0.4 231,075 + PGA1_262p02140 0.83 +0.6 231,213 + -0.4 231,245 - -0.5 231,250 + +2.0 231,252 + +0.4 231,272 + +0.2 231,279 - -0.4 231,282 - +1.4 231,371 - -0.6 231,371 - -0.8 231,381 + -1.7 231,389 - -0.2 231,402 + -0.2 231,402 + +0.1 231,455 + -0.5 231,458 - +0.3 231,478 - +0.2 231,505 + -2.4 231,518 - -0.2 231,570 - -0.2 231,585 - +0.6 231,632 - -1.8 231,632 - +0.4 231,638 - -0.2 231,643 + +0.1 231,669 + PGA1_262p02150 0.11 -1.8 231,681 + PGA1_262p02150 0.11 -0.8 231,691 + PGA1_262p02150 0.11 -0.9 231,699 - PGA1_262p02150 0.12 +0.4 231,699 - PGA1_262p02150 0.12 -1.0 231,724 + PGA1_262p02150 0.13 -1.8 231,734 - PGA1_262p02150 0.13 +1.4 231,800 + PGA1_262p02150 0.16 +0.4 231,808 - PGA1_262p02150 0.16 +0.1 231,817 + PGA1_262p02150 0.17 -0.2 231,825 - PGA1_262p02150 0.17 -0.2 231,842 + PGA1_262p02150 0.18 -1.2 231,850 - PGA1_262p02150 0.18 -0.2 231,882 - PGA1_262p02150 0.19 -1.5 231,898 - PGA1_262p02150 0.20 +0.7 231,927 + PGA1_262p02150 0.21 -1.2 231,935 - PGA1_262p02150 0.22 +0.2 231,935 - PGA1_262p02150 0.22 +0.6 231,937 + PGA1_262p02150 0.22 -0.2 231,982 - PGA1_262p02150 0.24 -1.3 232,181 + PGA1_262p02150 0.32 +0.7 232,241 - PGA1_262p02150 0.34 +0.5 232,333 + PGA1_262p02150 0.38 -0.2 232,403 + PGA1_262p02150 0.41 -3.7 232,403 + PGA1_262p02150 0.41 -2.0 232,403 + PGA1_262p02150 0.41 -0.0 232,403 + PGA1_262p02150 0.41 -0.8 232,403 + PGA1_262p02150 0.41 +0.5 232,403 + PGA1_262p02150 0.41 -0.2 232,403 + PGA1_262p02150 0.41 +0.3 232,403 + PGA1_262p02150 0.41 +0.2 232,403 + PGA1_262p02150 0.41 -0.1 232,403 + PGA1_262p02150 0.41 -1.8 232,403 + PGA1_262p02150 0.41 -1.1 232,411 - PGA1_262p02150 0.41 -1.5 232,411 - PGA1_262p02150 0.41 +1.1 232,411 - PGA1_262p02150 0.41 -0.1 232,411 - PGA1_262p02150 0.41 -0.3 232,411 - PGA1_262p02150 0.41 -0.5 232,411 - PGA1_262p02150 0.41 +0.5 232,411 - PGA1_262p02150 0.41 +0.4 232,411 - PGA1_262p02150 0.41 -1.5 232,411 - PGA1_262p02150 0.41 -1.2 232,411 - PGA1_262p02150 0.41 -0.3 232,411 - PGA1_262p02150 0.41 -0.9 232,413 + PGA1_262p02150 0.42 +0.8 232,639 + PGA1_262p02150 0.51 -0.2 232,639 - PGA1_262p02150 0.51 -0.2 232,682 - PGA1_262p02150 0.53 +0.8 232,682 - PGA1_262p02150 0.53 -0.8 232,729 + PGA1_262p02150 0.55 -0.2 232,729 + PGA1_262p02150 0.55 +0.3 232,734 + PGA1_262p02150 0.55 -0.9 232,734 + PGA1_262p02150 0.55 +1.8 232,734 + PGA1_262p02150 0.55 +0.8 232,734 + PGA1_262p02150 0.55 +0.3 232,737 - PGA1_262p02150 0.55 -0.7 232,739 + PGA1_262p02150 0.55 +1.4 232,742 - PGA1_262p02150 0.55 -1.2 232,742 - PGA1_262p02150 0.55 -0.2 232,742 - PGA1_262p02150 0.55 -1.8 232,742 - PGA1_262p02150 0.55 +0.1 232,851 - PGA1_262p02150 0.60 +0.2 233,928 - -0.6 233,967 - -0.5 234,061 - PGA1_262p02160 0.15 -1.1 234,065 - PGA1_262p02160 0.15 -3.0 234,072 + PGA1_262p02160 0.16 +0.4 234,126 + PGA1_262p02160 0.21 +0.6 234,151 - PGA1_262p02160 0.24 -0.2 234,339 + PGA1_262p02160 0.43 -2.2 234,401 - PGA1_262p02160 0.49 -2.2 234,418 - PGA1_262p02160 0.51 -0.2 234,428 - PGA1_262p02160 0.52 -1.1 234,515 + PGA1_262p02160 0.60 -0.1 234,523 - PGA1_262p02160 0.61 -1.9 234,590 + PGA1_262p02160 0.68 +0.2 234,590 + PGA1_262p02160 0.68 -1.4 234,599 - PGA1_262p02160 0.69 -0.9 234,609 - PGA1_262p02160 0.70 -0.0 234,623 + PGA1_262p02160 0.71 +2.9 234,623 + PGA1_262p02160 0.71 -2.2 234,631 - PGA1_262p02160 0.72 -0.2 234,684 + PGA1_262p02160 0.77 -0.6 234,684 + PGA1_262p02160 0.77 -2.0 234,692 - PGA1_262p02160 0.78 +0.8 234,692 - PGA1_262p02160 0.78 -0.2 234,732 + PGA1_262p02160 0.82 -1.3 234,735 - PGA1_262p02160 0.82 -0.6 234,740 - PGA1_262p02160 0.83 -1.2 234,752 - PGA1_262p02160 0.84 +0.6 234,785 - PGA1_262p02160 0.87 -0.1 234,785 - PGA1_262p02160 0.87 +0.7
Or see this region's nucleotide sequence