Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00690 and PGA1_262p00700 are separated by 1 nucleotides PGA1_262p00700 and PGA1_262p00710 overlap by 4 nucleotides PGA1_262p00710 and PGA1_262p00720 overlap by 4 nucleotides
PGA1_262p00690: PGA1_262p00690 - stressosome protein rsbRA-like protein, at 79,498 to 80,373
_262p00690
PGA1_262p00700: PGA1_262p00700 - stressosome protein rsbS-like protein, at 80,375 to 80,737
_262p00700
PGA1_262p00710: PGA1_262p00710 - serine/threonine-protein kinase RsbT-like protein, at 80,734 to 81,141
_262p00710
PGA1_262p00720: PGA1_262p00720 - serine/threonine-protein kinase RsbT-like protein, at 81,138 to 82,151
_262p00720
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1 at 79.751 kb on + strand, within PGA1_262p00690 at 79.775 kb on + strand, within PGA1_262p00690 at 79.775 kb on + strand, within PGA1_262p00690 at 79.783 kb on - strand, within PGA1_262p00690 at 79.822 kb on + strand, within PGA1_262p00690 at 80.023 kb on + strand, within PGA1_262p00690 at 80.116 kb on - strand, within PGA1_262p00690 at 80.239 kb on - strand, within PGA1_262p00690 at 80.334 kb on - strand at 80.350 kb on - strand at 80.600 kb on + strand, within PGA1_262p00700 at 80.600 kb on + strand, within PGA1_262p00700 at 80.674 kb on + strand, within PGA1_262p00700 at 80.957 kb on + strand, within PGA1_262p00710 at 80.959 kb on + strand, within PGA1_262p00710 at 81.138 kb on - strand at 81.155 kb on - strand at 81.238 kb on - strand at 81.376 kb on + strand, within PGA1_262p00720 at 81.437 kb on + strand, within PGA1_262p00720 at 81.497 kb on + strand, within PGA1_262p00720 at 81.586 kb on - strand, within PGA1_262p00720 at 81.639 kb on + strand, within PGA1_262p00720 at 81.657 kb on - strand, within PGA1_262p00720 at 81.732 kb on - strand, within PGA1_262p00720 at 81.822 kb on - strand, within PGA1_262p00720
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 79,751 + PGA1_262p00690 0.29 +0.5 79,775 + PGA1_262p00690 0.32 +0.1 79,775 + PGA1_262p00690 0.32 -0.0 79,783 - PGA1_262p00690 0.33 -0.6 79,822 + PGA1_262p00690 0.37 -0.5 80,023 + PGA1_262p00690 0.60 +0.6 80,116 - PGA1_262p00690 0.71 +0.8 80,239 - PGA1_262p00690 0.85 -0.1 80,334 - +1.4 80,350 - +0.7 80,600 + PGA1_262p00700 0.62 +0.3 80,600 + PGA1_262p00700 0.62 -0.2 80,674 + PGA1_262p00700 0.82 +0.9 80,957 + PGA1_262p00710 0.55 -0.5 80,959 + PGA1_262p00710 0.55 -1.6 81,138 - -0.7 81,155 - +1.1 81,238 - -1.9 81,376 + PGA1_262p00720 0.23 +1.7 81,437 + PGA1_262p00720 0.29 +0.0 81,497 + PGA1_262p00720 0.35 -1.4 81,586 - PGA1_262p00720 0.44 +1.3 81,639 + PGA1_262p00720 0.49 -0.9 81,657 - PGA1_262p00720 0.51 -0.8 81,732 - PGA1_262p00720 0.59 +0.1 81,822 - PGA1_262p00720 0.67 -1.2
Or see this region's nucleotide sequence