Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00640 and PGA1_262p00650 are separated by 96 nucleotides PGA1_262p00650 and PGA1_262p00660 are separated by 83 nucleotides PGA1_262p00660 and PGA1_262p00670 overlap by 11 nucleotides
PGA1_262p00640: PGA1_262p00640 - Hemolysin-type calcium-binding repeat (2 copies)., at 74,081 to 75,160
_262p00640
PGA1_262p00650: PGA1_262p00650 - putative lytic murein transglycosylase, at 75,257 to 76,432
_262p00650
PGA1_262p00660: PGA1_262p00660 - Predicted periplasmic protein, at 76,516 to 77,337
_262p00660
PGA1_262p00670: PGA1_262p00670 - hypothetical protein, at 77,327 to 78,673
_262p00670
Position (kb) 75
76
77 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 74.271 kb on + strand, within PGA1_262p00640 at 74.279 kb on - strand, within PGA1_262p00640 at 74.279 kb on - strand, within PGA1_262p00640 at 74.324 kb on + strand, within PGA1_262p00640 at 74.327 kb on - strand, within PGA1_262p00640 at 74.329 kb on + strand, within PGA1_262p00640 at 74.336 kb on - strand, within PGA1_262p00640 at 74.337 kb on - strand, within PGA1_262p00640 at 74.337 kb on - strand, within PGA1_262p00640 at 74.393 kb on + strand, within PGA1_262p00640 at 74.401 kb on - strand, within PGA1_262p00640 at 74.515 kb on + strand, within PGA1_262p00640 at 74.543 kb on + strand, within PGA1_262p00640 at 74.587 kb on + strand, within PGA1_262p00640 at 74.645 kb on + strand, within PGA1_262p00640 at 74.645 kb on + strand, within PGA1_262p00640 at 74.645 kb on + strand, within PGA1_262p00640 at 74.662 kb on - strand, within PGA1_262p00640 at 74.680 kb on - strand, within PGA1_262p00640 at 74.680 kb on - strand, within PGA1_262p00640 at 74.698 kb on + strand, within PGA1_262p00640 at 74.710 kb on + strand, within PGA1_262p00640 at 74.710 kb on + strand, within PGA1_262p00640 at 74.718 kb on - strand, within PGA1_262p00640 at 74.754 kb on + strand, within PGA1_262p00640 at 74.761 kb on - strand, within PGA1_262p00640 at 74.761 kb on - strand, within PGA1_262p00640 at 74.807 kb on + strand, within PGA1_262p00640 at 74.869 kb on - strand, within PGA1_262p00640 at 74.898 kb on + strand, within PGA1_262p00640 at 75.089 kb on + strand at 75.089 kb on + strand at 75.089 kb on + strand at 75.097 kb on - strand at 75.097 kb on - strand at 75.102 kb on + strand at 75.195 kb on - strand at 75.230 kb on + strand at 75.248 kb on + strand at 75.258 kb on - strand at 75.258 kb on - strand at 75.272 kb on + strand at 75.315 kb on - strand at 75.426 kb on + strand, within PGA1_262p00650 at 75.673 kb on - strand, within PGA1_262p00650 at 75.715 kb on + strand, within PGA1_262p00650 at 75.938 kb on - strand, within PGA1_262p00650 at 76.014 kb on + strand, within PGA1_262p00650 at 76.014 kb on + strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.022 kb on - strand, within PGA1_262p00650 at 76.055 kb on + strand, within PGA1_262p00650 at 76.380 kb on - strand at 76.467 kb on - strand at 76.474 kb on - strand at 76.545 kb on + strand at 76.837 kb on + strand, within PGA1_262p00660 at 76.949 kb on + strand, within PGA1_262p00660 at 77.022 kb on - strand, within PGA1_262p00660 at 77.059 kb on + strand, within PGA1_262p00660 at 77.189 kb on + strand, within PGA1_262p00660 at 77.215 kb on + strand, within PGA1_262p00660 at 77.303 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 74,271 + PGA1_262p00640 0.18 -0.5 74,279 - PGA1_262p00640 0.18 -1.2 74,279 - PGA1_262p00640 0.18 +0.2 74,324 + PGA1_262p00640 0.23 -0.7 74,327 - PGA1_262p00640 0.23 +0.8 74,329 + PGA1_262p00640 0.23 +0.8 74,336 - PGA1_262p00640 0.24 -1.8 74,337 - PGA1_262p00640 0.24 -0.5 74,337 - PGA1_262p00640 0.24 -1.2 74,393 + PGA1_262p00640 0.29 +0.8 74,401 - PGA1_262p00640 0.30 +0.4 74,515 + PGA1_262p00640 0.40 +2.4 74,543 + PGA1_262p00640 0.43 -0.5 74,587 + PGA1_262p00640 0.47 +1.7 74,645 + PGA1_262p00640 0.52 -0.2 74,645 + PGA1_262p00640 0.52 +0.2 74,645 + PGA1_262p00640 0.52 +0.3 74,662 - PGA1_262p00640 0.54 -0.3 74,680 - PGA1_262p00640 0.55 -1.7 74,680 - PGA1_262p00640 0.55 +1.5 74,698 + PGA1_262p00640 0.57 +0.6 74,710 + PGA1_262p00640 0.58 -0.7 74,710 + PGA1_262p00640 0.58 +1.6 74,718 - PGA1_262p00640 0.59 +0.2 74,754 + PGA1_262p00640 0.62 +0.5 74,761 - PGA1_262p00640 0.63 -0.6 74,761 - PGA1_262p00640 0.63 -0.1 74,807 + PGA1_262p00640 0.67 +0.0 74,869 - PGA1_262p00640 0.73 +0.8 74,898 + PGA1_262p00640 0.76 -0.5 75,089 + +0.5 75,089 + +1.9 75,089 + -0.6 75,097 - -0.2 75,097 - +0.5 75,102 + -1.3 75,195 - +1.2 75,230 + -2.5 75,248 + -0.2 75,258 - +0.1 75,258 - +0.4 75,272 + +0.2 75,315 - +0.8 75,426 + PGA1_262p00650 0.14 -0.2 75,673 - PGA1_262p00650 0.35 -0.2 75,715 + PGA1_262p00650 0.39 -0.2 75,938 - PGA1_262p00650 0.58 -2.5 76,014 + PGA1_262p00650 0.64 -1.1 76,014 + PGA1_262p00650 0.64 -2.8 76,022 - PGA1_262p00650 0.65 +0.4 76,022 - PGA1_262p00650 0.65 -0.1 76,022 - PGA1_262p00650 0.65 -0.5 76,055 + PGA1_262p00650 0.68 -0.4 76,380 - -1.2 76,467 - +0.6 76,474 - +2.0 76,545 + +0.1 76,837 + PGA1_262p00660 0.39 +0.4 76,949 + PGA1_262p00660 0.53 +0.3 77,022 - PGA1_262p00660 0.62 -0.6 77,059 + PGA1_262p00660 0.66 +1.3 77,189 + PGA1_262p00660 0.82 -0.2 77,215 + PGA1_262p00660 0.85 -0.6 77,303 + -0.0
Or see this region's nucleotide sequence