Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p00560

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p00550 and PGA1_262p00560 overlap by 1 nucleotidesPGA1_262p00560 and PGA1_262p00570 are separated by 27 nucleotidesPGA1_262p00570 and PGA1_262p00580 are separated by 26 nucleotides PGA1_262p00550: PGA1_262p00550 - putative DNA modification/repair radical SAM protein, at 63,777 to 65,033 _262p00550 PGA1_262p00560: PGA1_262p00560 - uracil DNA glycosylase-like protein, at 65,033 to 66,478 _262p00560 PGA1_262p00570: PGA1_262p00570 - hypothetical protein, at 66,506 to 66,763 _262p00570 PGA1_262p00580: PGA1_262p00580 - putative polysaccharide biosynthesis/export protein, at 66,790 to 68,163 _262p00580 Position (kb) 65 66 67Strain fitness (log2 ratio) -2 -1 0 1 2at 64.240 kb on - strand, within PGA1_262p00550at 64.342 kb on - strand, within PGA1_262p00550at 64.376 kb on + strand, within PGA1_262p00550at 64.475 kb on + strand, within PGA1_262p00550at 64.592 kb on - strand, within PGA1_262p00550at 64.654 kb on - strand, within PGA1_262p00550at 64.793 kb on - strand, within PGA1_262p00550at 64.793 kb on - strand, within PGA1_262p00550at 64.856 kb on + strand, within PGA1_262p00550at 64.986 kb on - strandat 65.069 kb on - strandat 65.074 kb on - strandat 65.087 kb on + strandat 65.173 kb on + strandat 65.175 kb on + strandat 65.486 kb on - strand, within PGA1_262p00560at 65.527 kb on - strand, within PGA1_262p00560at 65.596 kb on + strand, within PGA1_262p00560at 65.619 kb on - strand, within PGA1_262p00560at 65.681 kb on + strand, within PGA1_262p00560at 66.019 kb on - strand, within PGA1_262p00560at 66.035 kb on - strand, within PGA1_262p00560at 66.311 kb on + strand, within PGA1_262p00560at 66.365 kb on - strandat 66.532 kb on + strand, within PGA1_262p00570at 66.540 kb on - strand, within PGA1_262p00570at 66.540 kb on - strand, within PGA1_262p00570at 66.542 kb on + strand, within PGA1_262p00570at 66.542 kb on + strand, within PGA1_262p00570at 66.661 kb on + strand, within PGA1_262p00570at 66.692 kb on - strand, within PGA1_262p00570at 66.751 kb on + strandat 66.754 kb on - strandat 66.761 kb on + strandat 66.844 kb on - strandat 66.924 kb on + strandat 66.932 kb on - strand, within PGA1_262p00580at 66.932 kb on - strand, within PGA1_262p00580at 67.007 kb on + strand, within PGA1_262p00580at 67.007 kb on + strand, within PGA1_262p00580at 67.055 kb on + strand, within PGA1_262p00580at 67.063 kb on - strand, within PGA1_262p00580at 67.135 kb on + strand, within PGA1_262p00580at 67.137 kb on + strand, within PGA1_262p00580at 67.197 kb on + strand, within PGA1_262p00580at 67.205 kb on - strand, within PGA1_262p00580at 67.234 kb on + strand, within PGA1_262p00580at 67.240 kb on - strand, within PGA1_262p00580at 67.368 kb on - strand, within PGA1_262p00580at 67.368 kb on - strand, within PGA1_262p00580

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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64,240 - PGA1_262p00550 0.37 -1.5
64,342 - PGA1_262p00550 0.45 -1.2
64,376 + PGA1_262p00550 0.48 -0.6
64,475 + PGA1_262p00550 0.56 -1.1
64,592 - PGA1_262p00550 0.65 -1.3
64,654 - PGA1_262p00550 0.70 -0.0
64,793 - PGA1_262p00550 0.81 -0.4
64,793 - PGA1_262p00550 0.81 -0.0
64,856 + PGA1_262p00550 0.86 -0.4
64,986 - -0.2
65,069 - +0.0
65,074 - +0.2
65,087 + -0.2
65,173 + +0.2
65,175 + -0.6
65,486 - PGA1_262p00560 0.31 -2.3
65,527 - PGA1_262p00560 0.34 -0.6
65,596 + PGA1_262p00560 0.39 +0.2
65,619 - PGA1_262p00560 0.41 -0.9
65,681 + PGA1_262p00560 0.45 -0.7
66,019 - PGA1_262p00560 0.68 +1.4
66,035 - PGA1_262p00560 0.69 -1.1
66,311 + PGA1_262p00560 0.88 +1.0
66,365 - +2.1
66,532 + PGA1_262p00570 0.10 +0.1
66,540 - PGA1_262p00570 0.13 -0.3
66,540 - PGA1_262p00570 0.13 -0.7
66,542 + PGA1_262p00570 0.14 +0.6
66,542 + PGA1_262p00570 0.14 -0.4
66,661 + PGA1_262p00570 0.60 -2.3
66,692 - PGA1_262p00570 0.72 +1.4
66,751 + -0.8
66,754 - +0.2
66,761 + -0.4
66,844 - -1.2
66,924 + -0.6
66,932 - PGA1_262p00580 0.10 -0.2
66,932 - PGA1_262p00580 0.10 +1.1
67,007 + PGA1_262p00580 0.16 +0.5
67,007 + PGA1_262p00580 0.16 +1.1
67,055 + PGA1_262p00580 0.19 -0.7
67,063 - PGA1_262p00580 0.20 +0.5
67,135 + PGA1_262p00580 0.25 -1.2
67,137 + PGA1_262p00580 0.25 -0.2
67,197 + PGA1_262p00580 0.30 +0.1
67,205 - PGA1_262p00580 0.30 +0.4
67,234 + PGA1_262p00580 0.32 -0.2
67,240 - PGA1_262p00580 0.33 -0.4
67,368 - PGA1_262p00580 0.42 -0.7
67,368 - PGA1_262p00580 0.42 +0.1

Or see this region's nucleotide sequence