Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00120 and PGA1_262p00130 overlap by 97 nucleotides PGA1_262p00130 and PGA1_262p00140 are separated by 213 nucleotides
PGA1_262p00120: PGA1_262p00120 - succinoglycan biosynthesis protein ExoL, at 14,366 to 15,547
_262p00120
PGA1_262p00130: PGA1_262p00130 - hypothetical protein, at 15,451 to 16,515
_262p00130
PGA1_262p00140: PGA1_262p00140 - putative amino acid binding protein, at 16,729 to 17,889
_262p00140
Position (kb) 15
16
17 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 14.505 kb on + strand, within PGA1_262p00120 at 14.513 kb on - strand, within PGA1_262p00120 at 14.566 kb on - strand, within PGA1_262p00120 at 14.762 kb on + strand, within PGA1_262p00120 at 14.770 kb on - strand, within PGA1_262p00120 at 14.840 kb on + strand, within PGA1_262p00120 at 14.859 kb on + strand, within PGA1_262p00120 at 14.867 kb on - strand, within PGA1_262p00120 at 14.937 kb on - strand, within PGA1_262p00120 at 15.003 kb on + strand, within PGA1_262p00120 at 15.037 kb on - strand, within PGA1_262p00120 at 15.037 kb on - strand, within PGA1_262p00120 at 15.130 kb on - strand, within PGA1_262p00120 at 15.295 kb on - strand, within PGA1_262p00120 at 15.331 kb on + strand, within PGA1_262p00120 at 15.331 kb on + strand, within PGA1_262p00120 at 15.357 kb on + strand, within PGA1_262p00120 at 15.441 kb on - strand at 15.500 kb on - strand at 15.579 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.629 kb on + strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.637 kb on - strand, within PGA1_262p00130 at 15.767 kb on - strand, within PGA1_262p00130 at 15.871 kb on - strand, within PGA1_262p00130 at 16.102 kb on + strand, within PGA1_262p00130 at 16.137 kb on + strand, within PGA1_262p00130 at 16.253 kb on + strand, within PGA1_262p00130 at 16.280 kb on + strand, within PGA1_262p00130 at 16.385 kb on + strand, within PGA1_262p00130 at 16.423 kb on + strand at 16.483 kb on - strand at 16.483 kb on - strand at 16.524 kb on + strand at 16.566 kb on - strand at 16.587 kb on + strand at 16.588 kb on + strand at 16.677 kb on + strand at 16.707 kb on - strand at 16.767 kb on - strand at 16.789 kb on - strand at 16.798 kb on - strand at 16.813 kb on + strand at 16.897 kb on + strand, within PGA1_262p00140 at 16.925 kb on + strand, within PGA1_262p00140 at 16.927 kb on + strand, within PGA1_262p00140 at 16.985 kb on - strand, within PGA1_262p00140 at 17.034 kb on + strand, within PGA1_262p00140 at 17.090 kb on - strand, within PGA1_262p00140 at 17.261 kb on - strand, within PGA1_262p00140 at 17.270 kb on + strand, within PGA1_262p00140 at 17.288 kb on - strand, within PGA1_262p00140 at 17.412 kb on + strand, within PGA1_262p00140 at 17.414 kb on - strand, within PGA1_262p00140 at 17.511 kb on - strand, within PGA1_262p00140
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 14,505 + PGA1_262p00120 0.12 -0.9 14,513 - PGA1_262p00120 0.12 -0.3 14,566 - PGA1_262p00120 0.17 -0.6 14,762 + PGA1_262p00120 0.34 +0.5 14,770 - PGA1_262p00120 0.34 -0.6 14,840 + PGA1_262p00120 0.40 +1.6 14,859 + PGA1_262p00120 0.42 +0.5 14,867 - PGA1_262p00120 0.42 -0.9 14,937 - PGA1_262p00120 0.48 +0.3 15,003 + PGA1_262p00120 0.54 +0.6 15,037 - PGA1_262p00120 0.57 -2.2 15,037 - PGA1_262p00120 0.57 -0.2 15,130 - PGA1_262p00120 0.65 +0.3 15,295 - PGA1_262p00120 0.79 -0.2 15,331 + PGA1_262p00120 0.82 +1.2 15,331 + PGA1_262p00120 0.82 +0.0 15,357 + PGA1_262p00120 0.84 +1.4 15,441 - -1.0 15,500 - -1.4 15,579 + PGA1_262p00130 0.12 -2.2 15,629 + PGA1_262p00130 0.17 -0.9 15,629 + PGA1_262p00130 0.17 -0.4 15,629 + PGA1_262p00130 0.17 +0.2 15,629 + PGA1_262p00130 0.17 -2.0 15,629 + PGA1_262p00130 0.17 -0.2 15,637 - PGA1_262p00130 0.17 -1.3 15,637 - PGA1_262p00130 0.17 -1.7 15,637 - PGA1_262p00130 0.17 -0.5 15,637 - PGA1_262p00130 0.17 +1.6 15,767 - PGA1_262p00130 0.30 -1.7 15,871 - PGA1_262p00130 0.39 -1.0 16,102 + PGA1_262p00130 0.61 -1.0 16,137 + PGA1_262p00130 0.64 -0.5 16,253 + PGA1_262p00130 0.75 +0.4 16,280 + PGA1_262p00130 0.78 -2.5 16,385 + PGA1_262p00130 0.88 -0.2 16,423 + -2.5 16,483 - -0.5 16,483 - -0.2 16,524 + +0.6 16,566 - +0.2 16,587 + -0.2 16,588 + +0.1 16,677 + -1.6 16,707 - -0.5 16,767 - +0.0 16,789 - +0.4 16,798 - +3.4 16,813 + -1.0 16,897 + PGA1_262p00140 0.14 +1.9 16,925 + PGA1_262p00140 0.17 +0.1 16,927 + PGA1_262p00140 0.17 -1.4 16,985 - PGA1_262p00140 0.22 +1.2 17,034 + PGA1_262p00140 0.26 +0.0 17,090 - PGA1_262p00140 0.31 -0.9 17,261 - PGA1_262p00140 0.46 -0.8 17,270 + PGA1_262p00140 0.47 -0.0 17,288 - PGA1_262p00140 0.48 -0.2 17,412 + PGA1_262p00140 0.59 -0.2 17,414 - PGA1_262p00140 0.59 +0.4 17,511 - PGA1_262p00140 0.67 +1.7
Or see this region's nucleotide sequence