Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00070 and PGA1_262p00080 are separated by 28 nucleotides PGA1_262p00080 and PGA1_262p00090 are separated by 7 nucleotides
PGA1_262p00070: PGA1_262p00070 - Lipid A core - O-antigen ligase and related enzymes, at 7,972 to 9,258
_262p00070
PGA1_262p00080: PGA1_262p00080 - hypothetical protein, at 9,287 to 10,054
_262p00080
PGA1_262p00090: PGA1_262p00090 - putative exopolysaccharide biosynthesis transport protein, at 10,062 to 12,173
_262p00090
Position (kb)
9
10
11 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 8.287 kb on - strand, within PGA1_262p00070 at 8.394 kb on + strand, within PGA1_262p00070 at 8.408 kb on + strand, within PGA1_262p00070 at 8.481 kb on - strand, within PGA1_262p00070 at 8.481 kb on - strand, within PGA1_262p00070 at 8.516 kb on - strand, within PGA1_262p00070 at 8.895 kb on + strand, within PGA1_262p00070 at 8.914 kb on + strand, within PGA1_262p00070 at 8.922 kb on - strand, within PGA1_262p00070 at 8.926 kb on + strand, within PGA1_262p00070 at 8.981 kb on + strand, within PGA1_262p00070 at 8.984 kb on + strand, within PGA1_262p00070 at 9.007 kb on + strand, within PGA1_262p00070 at 9.037 kb on - strand, within PGA1_262p00070 at 9.079 kb on - strand, within PGA1_262p00070 at 9.103 kb on - strand, within PGA1_262p00070 at 9.252 kb on + strand at 9.376 kb on - strand, within PGA1_262p00080 at 9.472 kb on - strand, within PGA1_262p00080 at 9.540 kb on - strand, within PGA1_262p00080 at 9.777 kb on - strand, within PGA1_262p00080 at 9.779 kb on + strand, within PGA1_262p00080 at 9.779 kb on + strand, within PGA1_262p00080 at 9.855 kb on - strand, within PGA1_262p00080 at 9.965 kb on - strand, within PGA1_262p00080 at 9.983 kb on + strand at 10.051 kb on + strand at 10.065 kb on + strand at 10.123 kb on + strand at 10.131 kb on - strand at 10.213 kb on + strand at 10.221 kb on - strand at 10.545 kb on - strand, within PGA1_262p00090 at 10.734 kb on + strand, within PGA1_262p00090 at 10.857 kb on - strand, within PGA1_262p00090 at 11.039 kb on - strand, within PGA1_262p00090
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 8,287 - PGA1_262p00070 0.24 -0.9 8,394 + PGA1_262p00070 0.33 +0.4 8,408 + PGA1_262p00070 0.34 +0.0 8,481 - PGA1_262p00070 0.40 -0.5 8,481 - PGA1_262p00070 0.40 -0.8 8,516 - PGA1_262p00070 0.42 -1.8 8,895 + PGA1_262p00070 0.72 +2.2 8,914 + PGA1_262p00070 0.73 +0.8 8,922 - PGA1_262p00070 0.74 +0.5 8,926 + PGA1_262p00070 0.74 -1.8 8,981 + PGA1_262p00070 0.78 +0.8 8,984 + PGA1_262p00070 0.79 -1.2 9,007 + PGA1_262p00070 0.80 -0.9 9,037 - PGA1_262p00070 0.83 -0.8 9,079 - PGA1_262p00070 0.86 -1.2 9,103 - PGA1_262p00070 0.88 -0.0 9,252 + +1.1 9,376 - PGA1_262p00080 0.12 -2.2 9,472 - PGA1_262p00080 0.24 -1.9 9,540 - PGA1_262p00080 0.33 +0.2 9,777 - PGA1_262p00080 0.64 -3.0 9,779 + PGA1_262p00080 0.64 +0.4 9,779 + PGA1_262p00080 0.64 -0.7 9,855 - PGA1_262p00080 0.74 -1.2 9,965 - PGA1_262p00080 0.88 -0.7 9,983 + -0.9 10,051 + +0.2 10,065 + -2.4 10,123 + +1.4 10,131 - +2.4 10,213 + +0.1 10,221 - +0.4 10,545 - PGA1_262p00090 0.23 -3.4 10,734 + PGA1_262p00090 0.32 +2.6 10,857 - PGA1_262p00090 0.38 -1.5 11,039 - PGA1_262p00090 0.46 +0.1
Or see this region's nucleotide sequence