Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00040 and PGA1_262p00050 are separated by 171 nucleotides PGA1_262p00050 and PGA1_262p00060 overlap by 8 nucleotides
PGA1_262p00040: PGA1_262p00040 - sulfotransferase-like protein, at 4,316 to 5,230
_262p00040
PGA1_262p00050: PGA1_262p00050 - putative glycosyl transferase, at 5,402 to 6,679
_262p00050
PGA1_262p00060: PGA1_262p00060 - putative glycosyl transferase, at 6,672 to 7,988
_262p00060
Position (kb) 5
6
7 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4.449 kb on - strand, within PGA1_262p00040 at 4.626 kb on + strand, within PGA1_262p00040 at 4.634 kb on - strand, within PGA1_262p00040 at 4.643 kb on + strand, within PGA1_262p00040 at 4.682 kb on + strand, within PGA1_262p00040 at 4.764 kb on + strand, within PGA1_262p00040 at 4.788 kb on - strand, within PGA1_262p00040 at 4.905 kb on + strand, within PGA1_262p00040 at 4.983 kb on - strand, within PGA1_262p00040 at 5.019 kb on + strand, within PGA1_262p00040 at 5.101 kb on + strand, within PGA1_262p00040 at 5.172 kb on + strand at 5.237 kb on + strand at 5.395 kb on + strand at 5.526 kb on + strand at 5.846 kb on - strand, within PGA1_262p00050 at 6.031 kb on + strand, within PGA1_262p00050 at 6.039 kb on - strand, within PGA1_262p00050 at 6.088 kb on + strand, within PGA1_262p00050 at 6.137 kb on + strand, within PGA1_262p00050 at 6.139 kb on + strand, within PGA1_262p00050 at 6.287 kb on + strand, within PGA1_262p00050 at 6.295 kb on - strand, within PGA1_262p00050 at 6.340 kb on + strand, within PGA1_262p00050 at 6.347 kb on - strand, within PGA1_262p00050 at 6.374 kb on - strand, within PGA1_262p00050 at 6.420 kb on + strand, within PGA1_262p00050 at 6.428 kb on - strand, within PGA1_262p00050 at 6.774 kb on + strand at 6.972 kb on - strand, within PGA1_262p00060 at 6.979 kb on + strand, within PGA1_262p00060 at 6.993 kb on - strand, within PGA1_262p00060 at 7.096 kb on + strand, within PGA1_262p00060 at 7.263 kb on - strand, within PGA1_262p00060 at 7.297 kb on - strand, within PGA1_262p00060
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 4,449 - PGA1_262p00040 0.15 -0.5 4,626 + PGA1_262p00040 0.34 -0.7 4,634 - PGA1_262p00040 0.35 -0.2 4,643 + PGA1_262p00040 0.36 -1.7 4,682 + PGA1_262p00040 0.40 +2.1 4,764 + PGA1_262p00040 0.49 -1.9 4,788 - PGA1_262p00040 0.52 -0.8 4,905 + PGA1_262p00040 0.64 +0.3 4,983 - PGA1_262p00040 0.73 -0.2 5,019 + PGA1_262p00040 0.77 -1.8 5,101 + PGA1_262p00040 0.86 -1.8 5,172 + +0.9 5,237 + -1.6 5,395 + +1.4 5,526 + -0.2 5,846 - PGA1_262p00050 0.35 -1.2 6,031 + PGA1_262p00050 0.49 +1.1 6,039 - PGA1_262p00050 0.50 -1.4 6,088 + PGA1_262p00050 0.54 -0.2 6,137 + PGA1_262p00050 0.58 -1.2 6,139 + PGA1_262p00050 0.58 -1.2 6,287 + PGA1_262p00050 0.69 -1.2 6,295 - PGA1_262p00050 0.70 -1.4 6,340 + PGA1_262p00050 0.73 +0.8 6,347 - PGA1_262p00050 0.74 -0.0 6,374 - PGA1_262p00050 0.76 -1.5 6,420 + PGA1_262p00050 0.80 -0.2 6,428 - PGA1_262p00050 0.80 -0.2 6,774 + +0.8 6,972 - PGA1_262p00060 0.23 -0.8 6,979 + PGA1_262p00060 0.23 -0.2 6,993 - PGA1_262p00060 0.24 -0.2 7,096 + PGA1_262p00060 0.32 +1.4 7,263 - PGA1_262p00060 0.45 -1.2 7,297 - PGA1_262p00060 0.47 -0.5
Or see this region's nucleotide sequence