Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00030 and PGA1_262p00040 are separated by 34 nucleotides PGA1_262p00040 and PGA1_262p00050 are separated by 171 nucleotides
PGA1_262p00030: PGA1_262p00030 - Glycosyl hydrolases family 16./Hemolysin-type calcium-binding repeat (2 copies)., at 2,983 to 4,281
_262p00030
PGA1_262p00040: PGA1_262p00040 - sulfotransferase-like protein, at 4,316 to 5,230
_262p00040
PGA1_262p00050: PGA1_262p00050 - putative glycosyl transferase, at 5,402 to 6,679
_262p00050
Position (kb) 4
5
6 Strain fitness (log2 ratio) -2
-1
0
1
2 at 3.361 kb on + strand, within PGA1_262p00030 at 3.609 kb on - strand, within PGA1_262p00030 at 3.618 kb on + strand, within PGA1_262p00030 at 3.659 kb on + strand, within PGA1_262p00030 at 3.802 kb on + strand, within PGA1_262p00030 at 4.082 kb on - strand, within PGA1_262p00030 at 4.232 kb on - strand at 4.234 kb on - strand at 4.387 kb on + strand at 4.449 kb on - strand, within PGA1_262p00040 at 4.626 kb on + strand, within PGA1_262p00040 at 4.634 kb on - strand, within PGA1_262p00040 at 4.643 kb on + strand, within PGA1_262p00040 at 4.682 kb on + strand, within PGA1_262p00040 at 4.764 kb on + strand, within PGA1_262p00040 at 4.788 kb on - strand, within PGA1_262p00040 at 4.905 kb on + strand, within PGA1_262p00040 at 4.983 kb on - strand, within PGA1_262p00040 at 5.019 kb on + strand, within PGA1_262p00040 at 5.101 kb on + strand, within PGA1_262p00040 at 5.172 kb on + strand at 5.237 kb on + strand at 5.395 kb on + strand at 5.526 kb on + strand at 5.846 kb on - strand, within PGA1_262p00050 at 6.031 kb on + strand, within PGA1_262p00050 at 6.039 kb on - strand, within PGA1_262p00050 at 6.088 kb on + strand, within PGA1_262p00050 at 6.137 kb on + strand, within PGA1_262p00050 at 6.139 kb on + strand, within PGA1_262p00050
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 3,361 + PGA1_262p00030 0.29 +0.2 3,609 - PGA1_262p00030 0.48 -0.5 3,618 + PGA1_262p00030 0.49 -1.8 3,659 + PGA1_262p00030 0.52 +0.4 3,802 + PGA1_262p00030 0.63 -0.9 4,082 - PGA1_262p00030 0.85 -0.2 4,232 - -0.2 4,234 - +0.5 4,387 + +0.2 4,449 - PGA1_262p00040 0.15 -0.5 4,626 + PGA1_262p00040 0.34 -0.7 4,634 - PGA1_262p00040 0.35 -0.2 4,643 + PGA1_262p00040 0.36 -1.7 4,682 + PGA1_262p00040 0.40 +2.1 4,764 + PGA1_262p00040 0.49 -1.9 4,788 - PGA1_262p00040 0.52 -0.8 4,905 + PGA1_262p00040 0.64 +0.3 4,983 - PGA1_262p00040 0.73 -0.2 5,019 + PGA1_262p00040 0.77 -1.8 5,101 + PGA1_262p00040 0.86 -1.8 5,172 + +0.9 5,237 + -1.6 5,395 + +1.4 5,526 + -0.2 5,846 - PGA1_262p00050 0.35 -1.2 6,031 + PGA1_262p00050 0.49 +1.1 6,039 - PGA1_262p00050 0.50 -1.4 6,088 + PGA1_262p00050 0.54 -0.2 6,137 + PGA1_262p00050 0.58 -1.2 6,139 + PGA1_262p00050 0.58 -1.2
Or see this region's nucleotide sequence