Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03170 and PGA1_c03180 are separated by 82 nucleotides PGA1_c03180 and PGA1_c03190 are separated by 88 nucleotides PGA1_c03190 and PGA1_c03200 are separated by 8 nucleotides PGA1_c03200 and PGA1_c03210 are separated by 79 nucleotides PGA1_c03210 and PGA1_c03220 overlap by 4 nucleotides
PGA1_c03170: PGA1_c03170 - hypothetical protein, at 306,362 to 306,826
_c03170
PGA1_c03180: PGA1_c03180 - hypothetical protein, at 306,909 to 307,394
_c03180
PGA1_c03190: PGA1_c03190 - Bacterial aa3 type cytochrome c oxidase subunit IV., at 307,483 to 307,617
_c03190
PGA1_c03200: PGA1_c03200 - hypothetical protein, at 307,626 to 308,294
_c03200
PGA1_c03210: PGA1_c03210 - branched-chain amino acid transport protein azlD-like protein, at 308,374 to 308,709
_c03210
PGA1_c03220: PGA1_c03220 - branched-chain amino acid transport protein azlC-like protein, at 308,706 to 309,431
_c03220
Position (kb) 307
308
309 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 306.676 kb on + strand, within PGA1_c03170 at 306.684 kb on - strand, within PGA1_c03170 at 306.832 kb on + strand at 306.837 kb on + strand at 306.900 kb on + strand at 307.016 kb on - strand, within PGA1_c03180 at 307.026 kb on - strand, within PGA1_c03180 at 307.039 kb on + strand, within PGA1_c03180 at 307.093 kb on + strand, within PGA1_c03180 at 307.145 kb on + strand, within PGA1_c03180 at 307.335 kb on + strand, within PGA1_c03180 at 307.346 kb on + strand at 307.423 kb on + strand at 307.423 kb on + strand at 307.423 kb on + strand at 307.431 kb on - strand at 307.571 kb on - strand, within PGA1_c03190 at 307.619 kb on - strand at 307.700 kb on - strand, within PGA1_c03200 at 307.700 kb on - strand, within PGA1_c03200 at 307.750 kb on - strand, within PGA1_c03200 at 307.843 kb on - strand, within PGA1_c03200 at 307.870 kb on + strand, within PGA1_c03200 at 307.981 kb on + strand, within PGA1_c03200 at 307.989 kb on - strand, within PGA1_c03200 at 308.020 kb on + strand, within PGA1_c03200 at 308.035 kb on - strand, within PGA1_c03200 at 308.054 kb on - strand, within PGA1_c03200 at 308.144 kb on - strand, within PGA1_c03200 at 308.194 kb on - strand, within PGA1_c03200 at 308.198 kb on + strand, within PGA1_c03200 at 308.234 kb on - strand at 308.264 kb on + strand at 308.272 kb on - strand at 308.272 kb on - strand at 308.306 kb on - strand at 308.367 kb on + strand at 308.375 kb on - strand at 308.405 kb on - strand at 308.436 kb on - strand, within PGA1_c03210 at 308.524 kb on + strand, within PGA1_c03210 at 308.527 kb on + strand, within PGA1_c03210 at 308.567 kb on + strand, within PGA1_c03210 at 308.567 kb on - strand, within PGA1_c03210 at 308.575 kb on - strand, within PGA1_c03210 at 308.595 kb on + strand, within PGA1_c03210 at 308.648 kb on - strand, within PGA1_c03210 at 308.675 kb on + strand, within PGA1_c03210 at 308.675 kb on + strand, within PGA1_c03210 at 308.675 kb on + strand, within PGA1_c03210 at 308.675 kb on + strand, within PGA1_c03210 at 308.675 kb on + strand, within PGA1_c03210 at 308.675 kb on + strand, within PGA1_c03210 at 308.683 kb on - strand at 308.683 kb on - strand at 308.683 kb on - strand at 308.683 kb on - strand at 308.683 kb on - strand at 308.686 kb on + strand at 308.693 kb on - strand at 308.693 kb on - strand at 308.718 kb on - strand at 308.718 kb on - strand at 308.754 kb on - strand at 308.756 kb on + strand at 308.761 kb on - strand at 308.789 kb on - strand, within PGA1_c03220 at 308.803 kb on - strand at 308.816 kb on - strand, within PGA1_c03220 at 308.826 kb on - strand, within PGA1_c03220 at 308.826 kb on - strand, within PGA1_c03220 at 308.826 kb on - strand, within PGA1_c03220 at 308.826 kb on - strand, within PGA1_c03220 at 308.826 kb on - strand, within PGA1_c03220 at 308.868 kb on - strand, within PGA1_c03220 at 308.879 kb on + strand, within PGA1_c03220 at 308.879 kb on + strand, within PGA1_c03220 at 308.879 kb on + strand, within PGA1_c03220 at 308.887 kb on - strand, within PGA1_c03220 at 308.957 kb on + strand, within PGA1_c03220 at 308.975 kb on - strand, within PGA1_c03220 at 308.981 kb on - strand, within PGA1_c03220 at 309.005 kb on + strand, within PGA1_c03220 at 309.035 kb on + strand, within PGA1_c03220 at 309.035 kb on + strand, within PGA1_c03220 at 309.035 kb on + strand, within PGA1_c03220 at 309.043 kb on - strand, within PGA1_c03220 at 309.068 kb on + strand, within PGA1_c03220 at 309.068 kb on + strand, within PGA1_c03220 at 309.082 kb on + strand, within PGA1_c03220 at 309.090 kb on - strand, within PGA1_c03220 at 309.154 kb on - strand, within PGA1_c03220 at 309.250 kb on + strand, within PGA1_c03220 at 309.258 kb on - strand, within PGA1_c03220 at 309.258 kb on - strand, within PGA1_c03220 at 309.258 kb on - strand, within PGA1_c03220 at 309.268 kb on - strand, within PGA1_c03220 at 309.280 kb on - strand, within PGA1_c03220
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 306,676 + PGA1_c03170 0.68 +2.1 306,684 - PGA1_c03170 0.69 +0.1 306,832 + +0.4 306,837 + -0.1 306,900 + -1.2 307,016 - PGA1_c03180 0.22 -0.3 307,026 - PGA1_c03180 0.24 +0.5 307,039 + PGA1_c03180 0.27 -2.6 307,093 + PGA1_c03180 0.38 +0.8 307,145 + PGA1_c03180 0.49 -1.3 307,335 + PGA1_c03180 0.88 -0.6 307,346 + -0.3 307,423 + +0.8 307,423 + +0.7 307,423 + -0.3 307,431 - -2.8 307,571 - PGA1_c03190 0.65 -0.3 307,619 - -0.2 307,700 - PGA1_c03200 0.11 -0.5 307,700 - PGA1_c03200 0.11 -0.5 307,750 - PGA1_c03200 0.19 -0.3 307,843 - PGA1_c03200 0.32 -2.0 307,870 + PGA1_c03200 0.36 -0.1 307,981 + PGA1_c03200 0.53 -1.7 307,989 - PGA1_c03200 0.54 -0.9 308,020 + PGA1_c03200 0.59 -0.3 308,035 - PGA1_c03200 0.61 -2.3 308,054 - PGA1_c03200 0.64 -0.7 308,144 - PGA1_c03200 0.77 -0.3 308,194 - PGA1_c03200 0.85 +0.1 308,198 + PGA1_c03200 0.86 +0.9 308,234 - -1.3 308,264 + -1.4 308,272 - -1.3 308,272 - -2.3 308,306 - +0.5 308,367 + +0.3 308,375 - +0.5 308,405 - +0.7 308,436 - PGA1_c03210 0.18 +1.0 308,524 + PGA1_c03210 0.45 +0.1 308,527 + PGA1_c03210 0.46 +1.3 308,567 + PGA1_c03210 0.57 -2.2 308,567 - PGA1_c03210 0.57 -0.3 308,575 - PGA1_c03210 0.60 -0.9 308,595 + PGA1_c03210 0.66 +0.7 308,648 - PGA1_c03210 0.82 -1.2 308,675 + PGA1_c03210 0.90 -0.6 308,675 + PGA1_c03210 0.90 -0.4 308,675 + PGA1_c03210 0.90 +0.0 308,675 + PGA1_c03210 0.90 +0.3 308,675 + PGA1_c03210 0.90 -0.6 308,675 + PGA1_c03210 0.90 +0.5 308,683 - -0.1 308,683 - -0.3 308,683 - +0.1 308,683 - +1.7 308,683 - +0.9 308,686 + +1.1 308,693 - +1.6 308,693 - -0.9 308,718 - -0.2 308,718 - -0.1 308,754 - -0.3 308,756 + +0.4 308,761 - +1.2 308,789 - PGA1_c03220 0.11 -0.1 308,803 - +1.7 308,816 - PGA1_c03220 0.15 -2.6 308,826 - PGA1_c03220 0.17 +0.2 308,826 - PGA1_c03220 0.17 -1.3 308,826 - PGA1_c03220 0.17 +0.5 308,826 - PGA1_c03220 0.17 +0.3 308,826 - PGA1_c03220 0.17 -1.2 308,868 - PGA1_c03220 0.22 -1.0 308,879 + PGA1_c03220 0.24 +0.7 308,879 + PGA1_c03220 0.24 +0.6 308,879 + PGA1_c03220 0.24 +1.1 308,887 - PGA1_c03220 0.25 +0.3 308,957 + PGA1_c03220 0.35 -0.7 308,975 - PGA1_c03220 0.37 +0.2 308,981 - PGA1_c03220 0.38 +0.5 309,005 + PGA1_c03220 0.41 +0.9 309,035 + PGA1_c03220 0.45 -1.4 309,035 + PGA1_c03220 0.45 -0.1 309,035 + PGA1_c03220 0.45 -0.9 309,043 - PGA1_c03220 0.46 -0.1 309,068 + PGA1_c03220 0.50 +1.3 309,068 + PGA1_c03220 0.50 +0.4 309,082 + PGA1_c03220 0.52 -3.4 309,090 - PGA1_c03220 0.53 -0.2 309,154 - PGA1_c03220 0.62 +0.4 309,250 + PGA1_c03220 0.75 +1.7 309,258 - PGA1_c03220 0.76 +1.1 309,258 - PGA1_c03220 0.76 +0.7 309,258 - PGA1_c03220 0.76 -0.7 309,268 - PGA1_c03220 0.77 +1.0 309,280 - PGA1_c03220 0.79 -0.5
Or see this region's nucleotide sequence