Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3126

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3125 and Psest_3126 are separated by 74 nucleotidesPsest_3126 and Psest_3127 are separated by 112 nucleotidesPsest_3127 and Psest_3128 are separated by 101 nucleotides Psest_3125: Psest_3125 - threonine synthase, at 3,301,457 to 3,302,866 _3125 Psest_3126: Psest_3126 - Homoserine dehydrogenase, at 3,302,941 to 3,304,245 _3126 Psest_3127: Psest_3127 - Uncharacterized conserved protein, at 3,304,358 to 3,304,846 _3127 Psest_3128: Psest_3128 - Protein-disulfide isomerase, at 3,304,948 to 3,305,673 _3128 Position (kb) 3302 3303 3304 3305Strain fitness (log2 ratio) -2 -1 0 1 2at 3302.943 kb on - strandat 3302.943 kb on - strandat 3302.943 kb on - strandat 3304.326 kb on - strandat 3304.486 kb on + strand, within Psest_3127at 3304.487 kb on - strand, within Psest_3127at 3304.487 kb on - strand, within Psest_3127at 3304.487 kb on - strand, within Psest_3127at 3304.487 kb on - strand, within Psest_3127at 3304.487 kb on - strand, within Psest_3127at 3304.487 kb on - strand, within Psest_3127at 3304.555 kb on + strand, within Psest_3127at 3304.556 kb on - strand, within Psest_3127at 3304.556 kb on - strand, within Psest_3127at 3304.660 kb on - strand, within Psest_3127at 3304.748 kb on - strand, within Psest_3127at 3304.764 kb on + strand, within Psest_3127at 3304.764 kb on + strand, within Psest_3127at 3304.765 kb on - strand, within Psest_3127at 3304.765 kb on - strand, within Psest_3127at 3304.884 kb on + strandat 3304.884 kb on + strandat 3304.884 kb on + strandat 3304.884 kb on + strandat 3304.884 kb on + strandat 3304.884 kb on + strandat 3304.885 kb on - strandat 3304.885 kb on - strandat 3304.885 kb on - strandat 3304.885 kb on - strandat 3304.885 kb on - strandat 3304.885 kb on - strandat 3304.885 kb on - strandat 3304.885 kb on - strandat 3304.917 kb on - strandat 3304.917 kb on - strandat 3305.165 kb on - strand, within Psest_3128at 3305.165 kb on - strand, within Psest_3128at 3305.165 kb on - strand, within Psest_3128at 3305.218 kb on + strand, within Psest_3128at 3305.218 kb on + strand, within Psest_3128at 3305.218 kb on + strand, within Psest_3128at 3305.219 kb on - strand, within Psest_3128at 3305.219 kb on - strand, within Psest_3128at 3305.219 kb on - strand, within Psest_3128at 3305.219 kb on - strand, within Psest_3128at 3305.223 kb on - strand, within Psest_3128

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,302,943 - +0.8
3,302,943 - -0.0
3,302,943 - -1.1
3,304,326 - +0.2
3,304,486 + Psest_3127 0.26 +0.3
3,304,487 - Psest_3127 0.26 +0.9
3,304,487 - Psest_3127 0.26 +1.8
3,304,487 - Psest_3127 0.26 -1.1
3,304,487 - Psest_3127 0.26 -0.7
3,304,487 - Psest_3127 0.26 -0.3
3,304,487 - Psest_3127 0.26 +0.3
3,304,555 + Psest_3127 0.40 -0.2
3,304,556 - Psest_3127 0.40 -0.3
3,304,556 - Psest_3127 0.40 -2.1
3,304,660 - Psest_3127 0.62 +0.1
3,304,748 - Psest_3127 0.80 +0.6
3,304,764 + Psest_3127 0.83 +0.6
3,304,764 + Psest_3127 0.83 -0.5
3,304,765 - Psest_3127 0.83 -0.4
3,304,765 - Psest_3127 0.83 +0.3
3,304,884 + -0.2
3,304,884 + +0.7
3,304,884 + +0.5
3,304,884 + +0.3
3,304,884 + -0.6
3,304,884 + +0.6
3,304,885 - +0.0
3,304,885 - -0.2
3,304,885 - -1.1
3,304,885 - +0.3
3,304,885 - -0.3
3,304,885 - +0.0
3,304,885 - +0.1
3,304,885 - +1.3
3,304,917 - -0.1
3,304,917 - -0.0
3,305,165 - Psest_3128 0.30 +1.7
3,305,165 - Psest_3128 0.30 -0.1
3,305,165 - Psest_3128 0.30 -2.6
3,305,218 + Psest_3128 0.37 -0.8
3,305,218 + Psest_3128 0.37 +0.3
3,305,218 + Psest_3128 0.37 +0.5
3,305,219 - Psest_3128 0.37 +0.0
3,305,219 - Psest_3128 0.37 +0.1
3,305,219 - Psest_3128 0.37 -1.0
3,305,219 - Psest_3128 0.37 -0.2
3,305,223 - Psest_3128 0.38 -2.4

Or see this region's nucleotide sequence