Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03100

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03090 and PGA1_c03100 are separated by 5 nucleotidesPGA1_c03100 and PGA1_c03110 are separated by 33 nucleotidesPGA1_c03110 and PGA1_c03120 are separated by 32 nucleotides PGA1_c03090: PGA1_c03090 - putative secretion protein, at 295,424 to 296,914 _c03090 PGA1_c03100: PGA1_c03100 - putative aminoglycoside efflux pump, at 296,920 to 300,315 _c03100 PGA1_c03110: PGA1_c03110 - NUDIX hydrolase, at 300,349 to 300,858 _c03110 PGA1_c03120: PGA1_c03120 - hypothetical protein, at 300,891 to 301,745 _c03120 Position (kb) 296 297 298 299 300 301Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 295.943 kb on - strand, within PGA1_c03090at 295.987 kb on - strand, within PGA1_c03090at 296.010 kb on + strand, within PGA1_c03090at 296.020 kb on + strand, within PGA1_c03090at 296.083 kb on + strand, within PGA1_c03090at 296.083 kb on + strand, within PGA1_c03090at 296.113 kb on + strand, within PGA1_c03090at 296.121 kb on + strand, within PGA1_c03090at 296.181 kb on - strand, within PGA1_c03090at 296.230 kb on - strand, within PGA1_c03090at 296.271 kb on + strand, within PGA1_c03090at 296.279 kb on - strand, within PGA1_c03090at 296.372 kb on + strand, within PGA1_c03090at 296.473 kb on - strand, within PGA1_c03090at 296.516 kb on - strand, within PGA1_c03090at 296.610 kb on - strand, within PGA1_c03090at 296.612 kb on + strand, within PGA1_c03090at 296.613 kb on + strand, within PGA1_c03090at 296.620 kb on - strand, within PGA1_c03090at 296.620 kb on - strand, within PGA1_c03090at 296.638 kb on - strand, within PGA1_c03090at 296.646 kb on + strand, within PGA1_c03090at 296.646 kb on + strand, within PGA1_c03090at 296.654 kb on - strand, within PGA1_c03090at 296.691 kb on + strand, within PGA1_c03090at 296.691 kb on + strand, within PGA1_c03090at 296.691 kb on + strand, within PGA1_c03090at 296.691 kb on + strand, within PGA1_c03090at 296.923 kb on - strandat 296.923 kb on - strandat 297.118 kb on + strandat 297.118 kb on - strandat 297.118 kb on - strandat 297.188 kb on + strandat 297.196 kb on - strandat 297.232 kb on + strandat 297.327 kb on + strand, within PGA1_c03100at 297.392 kb on + strand, within PGA1_c03100at 297.392 kb on + strand, within PGA1_c03100at 297.428 kb on + strand, within PGA1_c03100at 297.585 kb on + strand, within PGA1_c03100at 297.632 kb on + strand, within PGA1_c03100at 297.682 kb on + strand, within PGA1_c03100at 297.685 kb on - strand, within PGA1_c03100at 297.685 kb on - strand, within PGA1_c03100at 297.691 kb on + strand, within PGA1_c03100at 297.790 kb on + strand, within PGA1_c03100at 297.798 kb on - strand, within PGA1_c03100at 297.830 kb on - strand, within PGA1_c03100at 297.834 kb on + strand, within PGA1_c03100at 297.877 kb on + strand, within PGA1_c03100at 297.890 kb on - strand, within PGA1_c03100at 297.937 kb on + strand, within PGA1_c03100at 297.961 kb on - strand, within PGA1_c03100at 298.101 kb on - strand, within PGA1_c03100at 298.106 kb on + strand, within PGA1_c03100at 298.272 kb on + strand, within PGA1_c03100at 298.395 kb on + strand, within PGA1_c03100at 298.411 kb on - strand, within PGA1_c03100at 298.411 kb on - strand, within PGA1_c03100at 298.413 kb on + strand, within PGA1_c03100at 298.418 kb on + strand, within PGA1_c03100at 298.418 kb on + strand, within PGA1_c03100at 298.458 kb on - strand, within PGA1_c03100at 298.462 kb on + strand, within PGA1_c03100at 298.517 kb on - strand, within PGA1_c03100at 298.522 kb on - strand, within PGA1_c03100at 298.561 kb on - strand, within PGA1_c03100at 298.713 kb on + strand, within PGA1_c03100at 298.737 kb on + strand, within PGA1_c03100at 298.786 kb on + strand, within PGA1_c03100at 298.791 kb on + strand, within PGA1_c03100at 298.799 kb on - strand, within PGA1_c03100at 298.881 kb on - strand, within PGA1_c03100at 298.902 kb on - strand, within PGA1_c03100at 298.981 kb on - strand, within PGA1_c03100at 298.986 kb on + strand, within PGA1_c03100at 298.986 kb on + strand, within PGA1_c03100at 299.018 kb on - strand, within PGA1_c03100at 299.018 kb on - strand, within PGA1_c03100at 299.044 kb on + strand, within PGA1_c03100at 299.044 kb on + strand, within PGA1_c03100at 299.054 kb on + strand, within PGA1_c03100at 299.054 kb on + strand, within PGA1_c03100at 299.054 kb on + strand, within PGA1_c03100at 299.054 kb on + strand, within PGA1_c03100at 299.054 kb on + strand, within PGA1_c03100at 299.062 kb on - strand, within PGA1_c03100at 299.062 kb on - strand, within PGA1_c03100at 299.062 kb on - strand, within PGA1_c03100at 299.197 kb on - strand, within PGA1_c03100at 299.289 kb on + strand, within PGA1_c03100at 299.305 kb on - strand, within PGA1_c03100at 299.311 kb on + strand, within PGA1_c03100at 299.419 kb on - strand, within PGA1_c03100at 299.516 kb on + strand, within PGA1_c03100at 299.595 kb on - strand, within PGA1_c03100at 299.623 kb on - strand, within PGA1_c03100at 299.627 kb on + strand, within PGA1_c03100at 299.678 kb on - strand, within PGA1_c03100at 299.693 kb on - strand, within PGA1_c03100at 299.886 kb on + strand, within PGA1_c03100at 299.895 kb on + strand, within PGA1_c03100at 299.949 kb on + strand, within PGA1_c03100at 299.957 kb on - strand, within PGA1_c03100at 300.019 kb on + strandat 300.019 kb on + strandat 300.089 kb on + strandat 300.205 kb on + strandat 300.215 kb on + strandat 300.319 kb on + strandat 300.425 kb on - strand, within PGA1_c03110at 300.430 kb on - strand, within PGA1_c03110at 300.539 kb on + strand, within PGA1_c03110at 300.612 kb on + strand, within PGA1_c03110at 300.620 kb on - strand, within PGA1_c03110at 300.669 kb on - strand, within PGA1_c03110at 300.707 kb on - strand, within PGA1_c03110at 300.713 kb on + strand, within PGA1_c03110at 300.743 kb on - strand, within PGA1_c03110at 300.859 kb on + strandat 300.864 kb on + strandat 300.906 kb on + strandat 300.906 kb on + strandat 300.976 kb on + strandat 300.976 kb on + strandat 300.984 kb on - strand, within PGA1_c03120at 301.036 kb on + strand, within PGA1_c03120at 301.110 kb on - strand, within PGA1_c03120at 301.172 kb on - strand, within PGA1_c03120at 301.274 kb on + strand, within PGA1_c03120at 301.282 kb on + strand, within PGA1_c03120at 301.282 kb on - strand, within PGA1_c03120at 301.302 kb on - strand, within PGA1_c03120

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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295,943 - PGA1_c03090 0.35 -0.3
295,987 - PGA1_c03090 0.38 -0.9
296,010 + PGA1_c03090 0.39 +0.5
296,020 + PGA1_c03090 0.40 +0.7
296,083 + PGA1_c03090 0.44 +0.1
296,083 + PGA1_c03090 0.44 +0.4
296,113 + PGA1_c03090 0.46 -0.9
296,121 + PGA1_c03090 0.47 +1.3
296,181 - PGA1_c03090 0.51 -1.3
296,230 - PGA1_c03090 0.54 -1.6
296,271 + PGA1_c03090 0.57 -1.6
296,279 - PGA1_c03090 0.57 -1.6
296,372 + PGA1_c03090 0.64 -0.4
296,473 - PGA1_c03090 0.70 +0.7
296,516 - PGA1_c03090 0.73 -0.9
296,610 - PGA1_c03090 0.80 -1.3
296,612 + PGA1_c03090 0.80 -0.9
296,613 + PGA1_c03090 0.80 -1.9
296,620 - PGA1_c03090 0.80 +0.7
296,620 - PGA1_c03090 0.80 -0.3
296,638 - PGA1_c03090 0.81 -0.5
296,646 + PGA1_c03090 0.82 +1.3
296,646 + PGA1_c03090 0.82 +0.0
296,654 - PGA1_c03090 0.82 +0.2
296,691 + PGA1_c03090 0.85 -3.1
296,691 + PGA1_c03090 0.85 -0.8
296,691 + PGA1_c03090 0.85 -0.3
296,691 + PGA1_c03090 0.85 +1.0
296,923 - +1.0
296,923 - -0.2
297,118 + -1.6
297,118 - -0.6
297,118 - +2.3
297,188 + -0.3
297,196 - +0.7
297,232 + -0.5
297,327 + PGA1_c03100 0.12 -0.4
297,392 + PGA1_c03100 0.14 -0.0
297,392 + PGA1_c03100 0.14 +0.7
297,428 + PGA1_c03100 0.15 +0.1
297,585 + PGA1_c03100 0.20 +1.0
297,632 + PGA1_c03100 0.21 -0.9
297,682 + PGA1_c03100 0.22 -1.9
297,685 - PGA1_c03100 0.23 -0.9
297,685 - PGA1_c03100 0.23 -0.9
297,691 + PGA1_c03100 0.23 -0.0
297,790 + PGA1_c03100 0.26 -3.5
297,798 - PGA1_c03100 0.26 -0.2
297,830 - PGA1_c03100 0.27 -0.3
297,834 + PGA1_c03100 0.27 -0.9
297,877 + PGA1_c03100 0.28 +1.7
297,890 - PGA1_c03100 0.29 -1.9
297,937 + PGA1_c03100 0.30 -1.2
297,961 - PGA1_c03100 0.31 -0.6
298,101 - PGA1_c03100 0.35 +0.7
298,106 + PGA1_c03100 0.35 +0.7
298,272 + PGA1_c03100 0.40 -1.1
298,395 + PGA1_c03100 0.43 -0.0
298,411 - PGA1_c03100 0.44 -1.3
298,411 - PGA1_c03100 0.44 +0.3
298,413 + PGA1_c03100 0.44 -2.5
298,418 + PGA1_c03100 0.44 +0.7
298,418 + PGA1_c03100 0.44 +0.7
298,458 - PGA1_c03100 0.45 -0.3
298,462 + PGA1_c03100 0.45 -1.3
298,517 - PGA1_c03100 0.47 -1.5
298,522 - PGA1_c03100 0.47 -2.5
298,561 - PGA1_c03100 0.48 -1.9
298,713 + PGA1_c03100 0.53 -1.3
298,737 + PGA1_c03100 0.54 -1.0
298,786 + PGA1_c03100 0.55 -0.8
298,791 + PGA1_c03100 0.55 +0.1
298,799 - PGA1_c03100 0.55 +0.7
298,881 - PGA1_c03100 0.58 +1.4
298,902 - PGA1_c03100 0.58 -0.8
298,981 - PGA1_c03100 0.61 -0.3
298,986 + PGA1_c03100 0.61 -0.9
298,986 + PGA1_c03100 0.61 +0.7
299,018 - PGA1_c03100 0.62 -0.7
299,018 - PGA1_c03100 0.62 +0.1
299,044 + PGA1_c03100 0.63 -0.9
299,044 + PGA1_c03100 0.63 -0.2
299,054 + PGA1_c03100 0.63 +1.0
299,054 + PGA1_c03100 0.63 +0.5
299,054 + PGA1_c03100 0.63 -2.8
299,054 + PGA1_c03100 0.63 -1.5
299,054 + PGA1_c03100 0.63 +0.3
299,062 - PGA1_c03100 0.63 -1.6
299,062 - PGA1_c03100 0.63 -0.3
299,062 - PGA1_c03100 0.63 -2.0
299,197 - PGA1_c03100 0.67 -0.5
299,289 + PGA1_c03100 0.70 -1.0
299,305 - PGA1_c03100 0.70 +0.9
299,311 + PGA1_c03100 0.70 -0.1
299,419 - PGA1_c03100 0.74 -2.3
299,516 + PGA1_c03100 0.76 +0.4
299,595 - PGA1_c03100 0.79 +0.9
299,623 - PGA1_c03100 0.80 -0.5
299,627 + PGA1_c03100 0.80 +2.1
299,678 - PGA1_c03100 0.81 +0.1
299,693 - PGA1_c03100 0.82 +0.3
299,886 + PGA1_c03100 0.87 -0.9
299,895 + PGA1_c03100 0.88 +1.3
299,949 + PGA1_c03100 0.89 -1.3
299,957 - PGA1_c03100 0.89 +0.1
300,019 + -0.3
300,019 + -0.2
300,089 + +0.0
300,205 + -2.6
300,215 + +1.7
300,319 + +0.1
300,425 - PGA1_c03110 0.15 +0.1
300,430 - PGA1_c03110 0.16 +0.0
300,539 + PGA1_c03110 0.37 -1.6
300,612 + PGA1_c03110 0.52 +0.2
300,620 - PGA1_c03110 0.53 +0.7
300,669 - PGA1_c03110 0.63 -0.5
300,707 - PGA1_c03110 0.70 +0.9
300,713 + PGA1_c03110 0.71 +0.1
300,743 - PGA1_c03110 0.77 +1.3
300,859 + +1.0
300,864 + -0.9
300,906 + -0.3
300,906 + -1.9
300,976 + -2.5
300,976 + -1.6
300,984 - PGA1_c03120 0.11 +0.7
301,036 + PGA1_c03120 0.17 -1.5
301,110 - PGA1_c03120 0.26 -0.5
301,172 - PGA1_c03120 0.33 -1.3
301,274 + PGA1_c03120 0.45 -1.7
301,282 + PGA1_c03120 0.46 -0.7
301,282 - PGA1_c03120 0.46 +0.3
301,302 - PGA1_c03120 0.48 -1.5

Or see this region's nucleotide sequence