Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03060 and PGA1_c03070 are separated by 106 nucleotides PGA1_c03070 and PGA1_c03080 are separated by 76 nucleotides PGA1_c03080 and PGA1_c03090 are separated by 137 nucleotides
PGA1_c03060: PGA1_c03060 - aspartate carbamoyltransferase PyrB, at 292,804 to 293,799
_c03060
PGA1_c03070: PGA1_c03070 - putative uracil DNA glycosylase, at 293,906 to 294,667
_c03070
PGA1_c03080: PGA1_c03080 - molybdenum cofactor biosynthesis protein B, at 294,744 to 295,286
_c03080
PGA1_c03090: PGA1_c03090 - putative secretion protein, at 295,424 to 296,914
_c03090
Position (kb) 294
295
296 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 293.790 kb on - strand at 293.794 kb on + strand at 293.797 kb on - strand at 293.806 kb on + strand at 293.825 kb on + strand at 293.825 kb on + strand at 293.825 kb on + strand at 293.832 kb on - strand at 293.832 kb on - strand at 293.832 kb on - strand at 293.832 kb on - strand at 293.832 kb on - strand at 293.836 kb on + strand at 293.836 kb on + strand at 293.836 kb on + strand at 293.844 kb on - strand at 293.844 kb on - strand at 293.844 kb on - strand at 293.844 kb on - strand at 293.858 kb on + strand at 293.879 kb on - strand at 293.882 kb on + strand at 293.892 kb on + strand at 294.640 kb on + strand at 294.648 kb on - strand at 294.648 kb on - strand at 294.729 kb on - strand at 294.734 kb on + strand at 294.742 kb on - strand at 294.742 kb on - strand at 294.753 kb on + strand at 294.800 kb on - strand, within PGA1_c03080 at 294.811 kb on + strand, within PGA1_c03080 at 294.982 kb on + strand, within PGA1_c03080 at 294.982 kb on + strand, within PGA1_c03080 at 294.987 kb on + strand, within PGA1_c03080 at 295.017 kb on + strand, within PGA1_c03080 at 295.062 kb on + strand, within PGA1_c03080 at 295.062 kb on + strand, within PGA1_c03080 at 295.062 kb on + strand, within PGA1_c03080 at 295.128 kb on + strand, within PGA1_c03080 at 295.165 kb on + strand, within PGA1_c03080 at 295.165 kb on + strand, within PGA1_c03080 at 295.165 kb on + strand, within PGA1_c03080 at 295.269 kb on + strand at 295.269 kb on + strand at 295.291 kb on + strand at 295.291 kb on + strand at 295.291 kb on + strand at 295.307 kb on + strand at 295.307 kb on + strand at 295.315 kb on - strand at 295.316 kb on - strand at 295.317 kb on - strand at 295.318 kb on + strand at 295.332 kb on - strand at 295.337 kb on - strand at 295.357 kb on - strand at 295.517 kb on + strand at 295.517 kb on + strand at 295.653 kb on + strand, within PGA1_c03090 at 295.653 kb on + strand, within PGA1_c03090 at 295.712 kb on - strand, within PGA1_c03090 at 295.775 kb on + strand, within PGA1_c03090 at 295.847 kb on - strand, within PGA1_c03090 at 295.849 kb on + strand, within PGA1_c03090 at 295.943 kb on - strand, within PGA1_c03090 at 295.987 kb on - strand, within PGA1_c03090 at 296.010 kb on + strand, within PGA1_c03090 at 296.020 kb on + strand, within PGA1_c03090 at 296.083 kb on + strand, within PGA1_c03090 at 296.083 kb on + strand, within PGA1_c03090 at 296.113 kb on + strand, within PGA1_c03090 at 296.121 kb on + strand, within PGA1_c03090 at 296.181 kb on - strand, within PGA1_c03090 at 296.230 kb on - strand, within PGA1_c03090 at 296.271 kb on + strand, within PGA1_c03090 at 296.279 kb on - strand, within PGA1_c03090
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 293,790 - +0.1 293,794 + +1.7 293,797 - -1.9 293,806 + -0.8 293,825 + -0.8 293,825 + -0.9 293,825 + +0.3 293,832 - +0.5 293,832 - -1.0 293,832 - -0.0 293,832 - +2.0 293,832 - +1.3 293,836 + -1.5 293,836 + +0.7 293,836 + +0.7 293,844 - +0.2 293,844 - +3.0 293,844 - +1.9 293,844 - -0.3 293,858 + -0.3 293,879 - +0.0 293,882 + +0.7 293,892 + -1.1 294,640 + +1.4 294,648 - -1.3 294,648 - +0.3 294,729 - +0.0 294,734 + -0.3 294,742 - +0.1 294,742 - -1.6 294,753 + -0.1 294,800 - PGA1_c03080 0.10 +0.7 294,811 + PGA1_c03080 0.12 +0.1 294,982 + PGA1_c03080 0.44 +0.7 294,982 + PGA1_c03080 0.44 +2.7 294,987 + PGA1_c03080 0.45 -0.1 295,017 + PGA1_c03080 0.50 -0.9 295,062 + PGA1_c03080 0.59 +0.1 295,062 + PGA1_c03080 0.59 -2.5 295,062 + PGA1_c03080 0.59 -2.9 295,128 + PGA1_c03080 0.71 -1.0 295,165 + PGA1_c03080 0.78 -2.3 295,165 + PGA1_c03080 0.78 +0.7 295,165 + PGA1_c03080 0.78 -2.1 295,269 + -0.0 295,269 + -0.6 295,291 + +0.2 295,291 + -0.3 295,291 + +0.7 295,307 + -1.4 295,307 + -1.9 295,315 - +0.4 295,316 - +0.4 295,317 - -0.4 295,318 + +1.1 295,332 - -0.6 295,337 - +1.7 295,357 - +0.7 295,517 + -0.7 295,517 + +0.7 295,653 + PGA1_c03090 0.15 -0.2 295,653 + PGA1_c03090 0.15 -1.3 295,712 - PGA1_c03090 0.19 -0.2 295,775 + PGA1_c03090 0.24 -0.2 295,847 - PGA1_c03090 0.28 -1.8 295,849 + PGA1_c03090 0.29 +0.9 295,943 - PGA1_c03090 0.35 -0.3 295,987 - PGA1_c03090 0.38 -0.9 296,010 + PGA1_c03090 0.39 +0.5 296,020 + PGA1_c03090 0.40 +0.7 296,083 + PGA1_c03090 0.44 +0.1 296,083 + PGA1_c03090 0.44 +0.4 296,113 + PGA1_c03090 0.46 -0.9 296,121 + PGA1_c03090 0.47 +1.3 296,181 - PGA1_c03090 0.51 -1.3 296,230 - PGA1_c03090 0.54 -1.6 296,271 + PGA1_c03090 0.57 -1.6 296,279 - PGA1_c03090 0.57 -1.6
Or see this region's nucleotide sequence