Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2874

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2872 and Psest_2873 are separated by 83 nucleotidesPsest_2873 and Psest_2874 are separated by 102 nucleotidesPsest_2874 and Psest_2875 are separated by 493 nucleotides Psest_2872: Psest_2872 - protein RecA, at 3,062,916 to 3,063,959 _2872 Psest_2873: Psest_2873 - competence/damage-inducible protein CinA C-terminal domain, at 3,064,043 to 3,064,540 _2873 Psest_2874: Psest_2874 - Predicted acyltransferases, at 3,064,643 to 3,065,755 _2874 Psest_2875: Psest_2875 - DNA mismatch repair protein MutS, at 3,066,249 to 3,068,828 _2875 Position (kb) 3064 3065 3066Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3063.699 kb on - strand, within Psest_2872at 3063.770 kb on - strand, within Psest_2872at 3064.004 kb on - strandat 3064.006 kb on - strandat 3064.010 kb on - strandat 3064.027 kb on - strandat 3064.027 kb on - strandat 3064.160 kb on + strand, within Psest_2873at 3064.160 kb on + strand, within Psest_2873at 3064.161 kb on - strand, within Psest_2873at 3064.383 kb on + strand, within Psest_2873at 3064.383 kb on + strand, within Psest_2873at 3064.383 kb on + strand, within Psest_2873at 3064.384 kb on - strand, within Psest_2873at 3064.384 kb on - strand, within Psest_2873at 3064.384 kb on - strand, within Psest_2873at 3064.392 kb on + strand, within Psest_2873at 3064.392 kb on + strand, within Psest_2873at 3064.392 kb on + strand, within Psest_2873at 3064.393 kb on - strand, within Psest_2873at 3064.393 kb on - strand, within Psest_2873at 3064.578 kb on - strandat 3064.578 kb on - strandat 3064.798 kb on - strand, within Psest_2874at 3064.887 kb on + strand, within Psest_2874at 3064.888 kb on - strand, within Psest_2874at 3064.888 kb on - strand, within Psest_2874at 3064.986 kb on + strand, within Psest_2874at 3064.987 kb on - strand, within Psest_2874at 3064.987 kb on - strand, within Psest_2874at 3065.058 kb on + strand, within Psest_2874at 3065.058 kb on + strand, within Psest_2874at 3065.058 kb on + strand, within Psest_2874at 3065.058 kb on + strand, within Psest_2874at 3065.058 kb on + strand, within Psest_2874at 3065.058 kb on + strand, within Psest_2874at 3065.059 kb on - strand, within Psest_2874at 3065.086 kb on - strand, within Psest_2874at 3065.197 kb on - strand, within Psest_2874at 3065.197 kb on - strand, within Psest_2874at 3065.229 kb on + strand, within Psest_2874at 3065.230 kb on - strand, within Psest_2874at 3065.307 kb on + strand, within Psest_2874at 3065.308 kb on - strand, within Psest_2874at 3065.308 kb on - strand, within Psest_2874at 3065.308 kb on - strand, within Psest_2874at 3065.308 kb on - strand, within Psest_2874at 3065.308 kb on - strand, within Psest_2874at 3065.308 kb on - strand, within Psest_2874at 3065.308 kb on - strand, within Psest_2874at 3065.470 kb on - strand, within Psest_2874at 3065.470 kb on - strand, within Psest_2874at 3065.470 kb on - strand, within Psest_2874at 3065.499 kb on + strand, within Psest_2874at 3065.545 kb on - strand, within Psest_2874at 3065.545 kb on - strand, within Psest_2874at 3065.566 kb on - strand, within Psest_2874at 3065.566 kb on - strand, within Psest_2874at 3065.797 kb on + strandat 3065.959 kb on + strandat 3065.959 kb on + strandat 3065.959 kb on + strandat 3065.960 kb on - strandat 3066.226 kb on + strandat 3066.226 kb on + strandat 3066.227 kb on - strandat 3066.300 kb on + strandat 3066.342 kb on + strandat 3066.360 kb on + strandat 3066.361 kb on - strandat 3066.361 kb on - strandat 3066.361 kb on - strandat 3066.373 kb on - strandat 3066.373 kb on - strandat 3066.486 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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3,063,699 - Psest_2872 0.75 -0.3
3,063,770 - Psest_2872 0.82 +0.6
3,064,004 - -1.3
3,064,006 - -0.3
3,064,010 - -0.7
3,064,027 - +0.0
3,064,027 - +1.0
3,064,160 + Psest_2873 0.23 -0.1
3,064,160 + Psest_2873 0.23 +0.5
3,064,161 - Psest_2873 0.24 +0.3
3,064,383 + Psest_2873 0.68 +0.4
3,064,383 + Psest_2873 0.68 +0.3
3,064,383 + Psest_2873 0.68 +0.0
3,064,384 - Psest_2873 0.68 -1.5
3,064,384 - Psest_2873 0.68 +0.1
3,064,384 - Psest_2873 0.68 -0.4
3,064,392 + Psest_2873 0.70 +1.1
3,064,392 + Psest_2873 0.70 +1.3
3,064,392 + Psest_2873 0.70 +1.1
3,064,393 - Psest_2873 0.70 -1.0
3,064,393 - Psest_2873 0.70 +2.1
3,064,578 - -0.9
3,064,578 - -0.3
3,064,798 - Psest_2874 0.14 -0.4
3,064,887 + Psest_2874 0.22 -0.9
3,064,888 - Psest_2874 0.22 +0.2
3,064,888 - Psest_2874 0.22 -0.0
3,064,986 + Psest_2874 0.31 -0.9
3,064,987 - Psest_2874 0.31 -0.3
3,064,987 - Psest_2874 0.31 -1.9
3,065,058 + Psest_2874 0.37 -2.9
3,065,058 + Psest_2874 0.37 -0.6
3,065,058 + Psest_2874 0.37 -0.1
3,065,058 + Psest_2874 0.37 -1.3
3,065,058 + Psest_2874 0.37 +0.5
3,065,058 + Psest_2874 0.37 -1.7
3,065,059 - Psest_2874 0.37 -0.5
3,065,086 - Psest_2874 0.40 -0.3
3,065,197 - Psest_2874 0.50 +0.5
3,065,197 - Psest_2874 0.50 +2.1
3,065,229 + Psest_2874 0.53 -1.9
3,065,230 - Psest_2874 0.53 +0.1
3,065,307 + Psest_2874 0.60 -0.6
3,065,308 - Psest_2874 0.60 -1.9
3,065,308 - Psest_2874 0.60 -1.3
3,065,308 - Psest_2874 0.60 -1.5
3,065,308 - Psest_2874 0.60 -2.1
3,065,308 - Psest_2874 0.60 -0.2
3,065,308 - Psest_2874 0.60 -1.0
3,065,308 - Psest_2874 0.60 -1.1
3,065,470 - Psest_2874 0.74 -0.4
3,065,470 - Psest_2874 0.74 -0.0
3,065,470 - Psest_2874 0.74 -0.6
3,065,499 + Psest_2874 0.77 -1.4
3,065,545 - Psest_2874 0.81 -1.0
3,065,545 - Psest_2874 0.81 -1.9
3,065,566 - Psest_2874 0.83 +0.8
3,065,566 - Psest_2874 0.83 -0.7
3,065,797 + -0.9
3,065,959 + -0.5
3,065,959 + -1.2
3,065,959 + -0.3
3,065,960 - -0.3
3,066,226 + -0.7
3,066,226 + -1.2
3,066,227 - -2.7
3,066,300 + -0.1
3,066,342 + -1.0
3,066,360 + +1.9
3,066,361 - -0.4
3,066,361 - +0.0
3,066,361 - -0.4
3,066,373 - -1.1
3,066,373 - +1.1
3,066,486 + -1.9

Or see this region's nucleotide sequence