Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2587

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2586 and Psest_2587 are separated by 146 nucleotidesPsest_2587 and Psest_2588 are separated by 136 nucleotides Psest_2586: Psest_2586 - FimV N-terminal domain, at 2,766,021 to 2,768,753 _2586 Psest_2587: Psest_2587 - Aspartate-semialdehyde dehydrogenase, at 2,768,900 to 2,769,910 _2587 Psest_2588: Psest_2588 - aspartate-semialdehyde dehydrogenase, gamma-proteobacterial, at 2,770,047 to 2,771,159 _2588 Position (kb) 2768 2769 2770Strain fitness (log2 ratio) -2 -1 0 1 2at 2768.023 kb on - strand, within Psest_2586at 2768.023 kb on - strand, within Psest_2586at 2768.074 kb on - strand, within Psest_2586at 2768.074 kb on - strand, within Psest_2586at 2768.074 kb on - strand, within Psest_2586at 2768.074 kb on - strand, within Psest_2586at 2768.074 kb on - strand, within Psest_2586at 2768.074 kb on - strand, within Psest_2586at 2768.074 kb on - strand, within Psest_2586at 2768.074 kb on - strand, within Psest_2586at 2768.074 kb on - strand, within Psest_2586at 2768.074 kb on - strand, within Psest_2586at 2768.074 kb on - strand, within Psest_2586at 2768.163 kb on + strand, within Psest_2586at 2768.163 kb on + strand, within Psest_2586at 2768.163 kb on + strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.164 kb on - strand, within Psest_2586at 2768.198 kb on - strand, within Psest_2586at 2768.198 kb on - strand, within Psest_2586at 2768.313 kb on - strand, within Psest_2586at 2768.353 kb on + strand, within Psest_2586at 2768.379 kb on - strand, within Psest_2586at 2768.379 kb on - strand, within Psest_2586at 2768.381 kb on - strand, within Psest_2586at 2768.412 kb on + strand, within Psest_2586at 2768.413 kb on - strand, within Psest_2586at 2768.413 kb on - strand, within Psest_2586at 2768.472 kb on + strand, within Psest_2586at 2768.497 kb on - strandat 2768.528 kb on - strandat 2768.755 kb on - strandat 2768.759 kb on - strandat 2768.802 kb on - strandat 2768.802 kb on - strandat 2768.873 kb on - strandat 2768.891 kb on - strandat 2768.902 kb on - strandat 2768.907 kb on + strandat 2769.033 kb on + strand, within Psest_2587at 2769.033 kb on + strand, within Psest_2587at 2769.033 kb on + strand, within Psest_2587at 2769.033 kb on + strand, within Psest_2587at 2769.034 kb on - strand, within Psest_2587at 2769.170 kb on + strand, within Psest_2587at 2769.170 kb on + strand, within Psest_2587at 2769.170 kb on + strand, within Psest_2587at 2769.171 kb on - strand, within Psest_2587at 2769.171 kb on - strand, within Psest_2587at 2769.171 kb on - strand, within Psest_2587at 2769.171 kb on - strand, within Psest_2587at 2769.171 kb on - strand, within Psest_2587at 2769.171 kb on - strand, within Psest_2587at 2769.171 kb on - strand, within Psest_2587at 2769.171 kb on - strand, within Psest_2587at 2769.378 kb on - strand, within Psest_2587at 2769.378 kb on - strand, within Psest_2587at 2769.378 kb on - strand, within Psest_2587at 2769.449 kb on - strand, within Psest_2587at 2769.462 kb on - strand, within Psest_2587at 2769.462 kb on - strand, within Psest_2587at 2769.743 kb on + strand, within Psest_2587at 2769.863 kb on + strandat 2769.864 kb on - strandat 2769.904 kb on + strandat 2769.904 kb on + strandat 2769.905 kb on - strandat 2769.992 kb on + strandat 2769.992 kb on + strandat 2769.993 kb on - strandat 2769.993 kb on - strandat 2769.993 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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2,768,023 - Psest_2586 0.73 -2.0
2,768,023 - Psest_2586 0.73 +0.1
2,768,074 - Psest_2586 0.75 +0.9
2,768,074 - Psest_2586 0.75 +0.6
2,768,074 - Psest_2586 0.75 -0.1
2,768,074 - Psest_2586 0.75 -0.0
2,768,074 - Psest_2586 0.75 +0.3
2,768,074 - Psest_2586 0.75 -0.2
2,768,074 - Psest_2586 0.75 +0.2
2,768,074 - Psest_2586 0.75 +0.3
2,768,074 - Psest_2586 0.75 -0.2
2,768,074 - Psest_2586 0.75 -0.1
2,768,074 - Psest_2586 0.75 +0.1
2,768,163 + Psest_2586 0.78 -0.5
2,768,163 + Psest_2586 0.78 -0.8
2,768,163 + Psest_2586 0.78 +0.5
2,768,164 - Psest_2586 0.78 +0.4
2,768,164 - Psest_2586 0.78 +0.3
2,768,164 - Psest_2586 0.78 +0.4
2,768,164 - Psest_2586 0.78 -0.0
2,768,164 - Psest_2586 0.78 +2.6
2,768,164 - Psest_2586 0.78 -0.3
2,768,164 - Psest_2586 0.78 +0.1
2,768,164 - Psest_2586 0.78 +0.1
2,768,164 - Psest_2586 0.78 +0.3
2,768,164 - Psest_2586 0.78 -0.7
2,768,164 - Psest_2586 0.78 +0.3
2,768,164 - Psest_2586 0.78 +0.3
2,768,164 - Psest_2586 0.78 +0.3
2,768,164 - Psest_2586 0.78 +0.9
2,768,164 - Psest_2586 0.78 -0.2
2,768,164 - Psest_2586 0.78 -1.0
2,768,198 - Psest_2586 0.80 +0.1
2,768,198 - Psest_2586 0.80 +0.4
2,768,313 - Psest_2586 0.84 +1.7
2,768,353 + Psest_2586 0.85 +0.6
2,768,379 - Psest_2586 0.86 +0.6
2,768,379 - Psest_2586 0.86 +0.9
2,768,381 - Psest_2586 0.86 +0.2
2,768,412 + Psest_2586 0.87 +1.0
2,768,413 - Psest_2586 0.88 +0.7
2,768,413 - Psest_2586 0.88 -1.0
2,768,472 + Psest_2586 0.90 +1.0
2,768,497 - +0.0
2,768,528 - -0.8
2,768,755 - +0.2
2,768,759 - +0.9
2,768,802 - -0.4
2,768,802 - -1.2
2,768,873 - +0.3
2,768,891 - -1.0
2,768,902 - -0.0
2,768,907 + -0.7
2,769,033 + Psest_2587 0.13 -0.0
2,769,033 + Psest_2587 0.13 +0.5
2,769,033 + Psest_2587 0.13 +0.4
2,769,033 + Psest_2587 0.13 +0.3
2,769,034 - Psest_2587 0.13 -2.4
2,769,170 + Psest_2587 0.27 +1.3
2,769,170 + Psest_2587 0.27 +1.0
2,769,170 + Psest_2587 0.27 -0.3
2,769,171 - Psest_2587 0.27 -1.0
2,769,171 - Psest_2587 0.27 -0.4
2,769,171 - Psest_2587 0.27 -0.4
2,769,171 - Psest_2587 0.27 -0.2
2,769,171 - Psest_2587 0.27 -0.1
2,769,171 - Psest_2587 0.27 +1.9
2,769,171 - Psest_2587 0.27 -0.1
2,769,171 - Psest_2587 0.27 +0.8
2,769,378 - Psest_2587 0.47 -0.2
2,769,378 - Psest_2587 0.47 +0.2
2,769,378 - Psest_2587 0.47 +0.0
2,769,449 - Psest_2587 0.54 +1.0
2,769,462 - Psest_2587 0.56 -0.2
2,769,462 - Psest_2587 0.56 -0.2
2,769,743 + Psest_2587 0.83 +0.0
2,769,863 + +1.0
2,769,864 - -0.3
2,769,904 + +0.8
2,769,904 + +0.3
2,769,905 - -0.0
2,769,992 + +0.5
2,769,992 + -0.2
2,769,993 - +0.4
2,769,993 - -0.7
2,769,993 - -0.3

Or see this region's nucleotide sequence