Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_2134 and Psest_2135 are separated by 87 nucleotides Psest_2135 and Psest_2136 are separated by 271 nucleotides Psest_2136 and Psest_2137 are separated by 110 nucleotides
Psest_2134: Psest_2134 - amino acid carrier protein, at 2,270,200 to 2,271,543
_2134
Psest_2135: Psest_2135 - Peroxiredoxin, at 2,271,631 to 2,272,131
_2135
Psest_2136: Psest_2136 - Predicted homoserine dehydrogenase, at 2,272,403 to 2,273,635
_2136
Psest_2137: Psest_2137 - Uncharacterized membrane protein, putative virulence factor, at 2,273,746 to 2,275,212
_2137
Position (kb)
2272
2273
2274 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2271.526 kb on + strand at 2271.527 kb on - strand at 2271.537 kb on + strand at 2271.537 kb on + strand at 2271.537 kb on + strand at 2271.538 kb on - strand at 2271.538 kb on - strand at 2271.538 kb on - strand at 2271.873 kb on + strand, within Psest_2135 at 2271.874 kb on - strand, within Psest_2135 at 2271.980 kb on - strand, within Psest_2135 at 2271.980 kb on - strand, within Psest_2135 at 2271.980 kb on - strand, within Psest_2135 at 2272.169 kb on + strand at 2272.265 kb on + strand at 2272.268 kb on + strand at 2272.268 kb on + strand at 2272.268 kb on + strand at 2272.268 kb on + strand at 2272.269 kb on - strand at 2272.269 kb on - strand at 2272.333 kb on - strand at 2272.373 kb on - strand at 2272.402 kb on + strand at 2272.402 kb on + strand at 2272.402 kb on + strand at 2272.403 kb on - strand at 2272.403 kb on - strand at 2272.403 kb on - strand at 2272.408 kb on + strand at 2272.408 kb on + strand at 2272.408 kb on + strand at 2272.721 kb on + strand, within Psest_2136 at 2272.722 kb on - strand, within Psest_2136 at 2272.834 kb on + strand, within Psest_2136 at 2272.835 kb on - strand, within Psest_2136 at 2273.090 kb on + strand, within Psest_2136 at 2273.090 kb on + strand, within Psest_2136 at 2273.171 kb on + strand, within Psest_2136 at 2273.171 kb on + strand, within Psest_2136 at 2273.171 kb on + strand, within Psest_2136 at 2273.172 kb on - strand, within Psest_2136 at 2273.172 kb on - strand, within Psest_2136 at 2273.181 kb on + strand, within Psest_2136 at 2273.181 kb on + strand, within Psest_2136 at 2273.182 kb on - strand, within Psest_2136 at 2273.199 kb on - strand, within Psest_2136 at 2273.199 kb on - strand, within Psest_2136 at 2273.287 kb on + strand, within Psest_2136 at 2273.424 kb on + strand, within Psest_2136 at 2273.425 kb on - strand, within Psest_2136 at 2273.615 kb on - strand at 2273.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 2,271,526 + +0.1 2,271,527 - +0.7 2,271,537 + -0.6 2,271,537 + +0.8 2,271,537 + +0.5 2,271,538 - +0.8 2,271,538 - -0.2 2,271,538 - -0.6 2,271,873 + Psest_2135 0.48 +0.8 2,271,874 - Psest_2135 0.49 +0.4 2,271,980 - Psest_2135 0.70 -0.1 2,271,980 - Psest_2135 0.70 +0.6 2,271,980 - Psest_2135 0.70 -0.1 2,272,169 + -1.8 2,272,265 + +0.5 2,272,268 + -0.3 2,272,268 + +0.1 2,272,268 + -1.2 2,272,268 + +0.6 2,272,269 - +0.6 2,272,269 - +1.7 2,272,333 - +1.1 2,272,373 - +2.0 2,272,402 + +1.2 2,272,402 + -1.0 2,272,402 + +1.1 2,272,403 - +0.1 2,272,403 - +1.5 2,272,403 - -0.2 2,272,408 + +1.5 2,272,408 + +0.8 2,272,408 + +1.6 2,272,721 + Psest_2136 0.26 +2.9 2,272,722 - Psest_2136 0.26 +0.3 2,272,834 + Psest_2136 0.35 +2.1 2,272,835 - Psest_2136 0.35 +1.6 2,273,090 + Psest_2136 0.56 +1.0 2,273,090 + Psest_2136 0.56 +1.6 2,273,171 + Psest_2136 0.62 +1.9 2,273,171 + Psest_2136 0.62 +2.1 2,273,171 + Psest_2136 0.62 +1.8 2,273,172 - Psest_2136 0.62 +1.3 2,273,172 - Psest_2136 0.62 +1.2 2,273,181 + Psest_2136 0.63 +1.8 2,273,181 + Psest_2136 0.63 +1.7 2,273,182 - Psest_2136 0.63 +0.6 2,273,199 - Psest_2136 0.65 +1.6 2,273,199 - Psest_2136 0.65 +2.0 2,273,287 + Psest_2136 0.72 +2.1 2,273,424 + Psest_2136 0.83 +0.6 2,273,425 - Psest_2136 0.83 +1.7 2,273,615 - -0.3 2,273,844 - +0.3
Or see this region's nucleotide sequence