Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c18150 and PGA1_c18160 are separated by 212 nucleotides PGA1_c18160 and PGA1_c18170 are separated by 271 nucleotides
PGA1_c18150: PGA1_c18150 - Hemolysin-type calcium-binding repeat (2 copies)., at 1,893,496 to 1,894,764
_c18150
PGA1_c18160: PGA1_c18160 - trigger factor Tig, at 1,894,977 to 1,896,308
_c18160
PGA1_c18170: PGA1_c18170 - hypothetical protein, at 1,896,580 to 1,897,710
_c18170
Position (kb)
1894
1895
1896
1897 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1894.010 kb on + strand, within PGA1_c18150 at 1894.018 kb on - strand, within PGA1_c18150 at 1894.024 kb on - strand, within PGA1_c18150 at 1894.028 kb on - strand, within PGA1_c18150 at 1894.028 kb on - strand, within PGA1_c18150 at 1894.028 kb on - strand, within PGA1_c18150 at 1894.061 kb on + strand, within PGA1_c18150 at 1894.150 kb on + strand, within PGA1_c18150 at 1894.436 kb on - strand, within PGA1_c18150 at 1894.459 kb on + strand, within PGA1_c18150 at 1894.575 kb on - strand, within PGA1_c18150 at 1894.933 kb on - strand at 1894.940 kb on + strand at 1895.025 kb on - strand at 1895.385 kb on - strand, within PGA1_c18160 at 1895.563 kb on + strand, within PGA1_c18160 at 1895.872 kb on + strand, within PGA1_c18160 at 1895.880 kb on - strand, within PGA1_c18160 at 1896.128 kb on - strand, within PGA1_c18160 at 1896.163 kb on + strand, within PGA1_c18160 at 1896.417 kb on + strand at 1896.425 kb on - strand at 1896.425 kb on - strand at 1896.425 kb on - strand at 1896.425 kb on - strand at 1896.484 kb on + strand at 1896.564 kb on + strand at 1896.856 kb on - strand, within PGA1_c18170 at 1896.977 kb on + strand, within PGA1_c18170 at 1897.007 kb on - strand, within PGA1_c18170 at 1897.010 kb on + strand, within PGA1_c18170 at 1897.018 kb on - strand, within PGA1_c18170 at 1897.018 kb on - strand, within PGA1_c18170 at 1897.027 kb on + strand, within PGA1_c18170 at 1897.140 kb on + strand, within PGA1_c18170 at 1897.148 kb on - strand, within PGA1_c18170 at 1897.188 kb on + strand, within PGA1_c18170 at 1897.188 kb on + strand, within PGA1_c18170 at 1897.188 kb on + strand, within PGA1_c18170 at 1897.194 kb on - strand, within PGA1_c18170 at 1897.196 kb on - strand, within PGA1_c18170 at 1897.297 kb on + strand, within PGA1_c18170 at 1897.305 kb on - strand, within PGA1_c18170
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 1,894,010 + PGA1_c18150 0.41 +0.0 1,894,018 - PGA1_c18150 0.41 -2.5 1,894,024 - PGA1_c18150 0.42 +0.1 1,894,028 - PGA1_c18150 0.42 -0.1 1,894,028 - PGA1_c18150 0.42 +0.4 1,894,028 - PGA1_c18150 0.42 +0.9 1,894,061 + PGA1_c18150 0.45 -0.3 1,894,150 + PGA1_c18150 0.52 +0.5 1,894,436 - PGA1_c18150 0.74 +0.5 1,894,459 + PGA1_c18150 0.76 -2.8 1,894,575 - PGA1_c18150 0.85 -0.5 1,894,933 - +0.4 1,894,940 + +0.7 1,895,025 - -1.4 1,895,385 - PGA1_c18160 0.31 +0.7 1,895,563 + PGA1_c18160 0.44 -1.3 1,895,872 + PGA1_c18160 0.67 -2.2 1,895,880 - PGA1_c18160 0.68 -1.1 1,896,128 - PGA1_c18160 0.86 -0.6 1,896,163 + PGA1_c18160 0.89 -0.1 1,896,417 + -0.1 1,896,425 - +0.7 1,896,425 - -0.8 1,896,425 - -1.1 1,896,425 - -0.8 1,896,484 + +3.1 1,896,564 + +0.3 1,896,856 - PGA1_c18170 0.24 +0.2 1,896,977 + PGA1_c18170 0.35 -0.3 1,897,007 - PGA1_c18170 0.38 -1.8 1,897,010 + PGA1_c18170 0.38 +2.6 1,897,018 - PGA1_c18170 0.39 +2.8 1,897,018 - PGA1_c18170 0.39 +0.2 1,897,027 + PGA1_c18170 0.40 +0.5 1,897,140 + PGA1_c18170 0.50 +1.9 1,897,148 - PGA1_c18170 0.50 -1.8 1,897,188 + PGA1_c18170 0.54 +1.9 1,897,188 + PGA1_c18170 0.54 -1.1 1,897,188 + PGA1_c18170 0.54 -0.4 1,897,194 - PGA1_c18170 0.54 -0.0 1,897,196 - PGA1_c18170 0.54 -1.5 1,897,297 + PGA1_c18170 0.63 -1.8 1,897,305 - PGA1_c18170 0.64 -1.4
Or see this region's nucleotide sequence