Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01650 and PGA1_c01660 are separated by 67 nucleotides PGA1_c01660 and PGA1_c01670 are separated by 73 nucleotides PGA1_c01670 and PGA1_c01680 are separated by 205 nucleotides PGA1_c01680 and PGA1_c01690 are separated by 12 nucleotides PGA1_c01690 and PGA1_c01700 are separated by 99 nucleotides
PGA1_c01650: PGA1_c01650 - conserved hypothetical protein, at 158,211 to 158,831
_c01650
PGA1_c01660: PGA1_c01660 - hypothetical protein, at 158,899 to 159,243
_c01660
PGA1_c01670: PGA1_c01670 - hypothetical protein, at 159,317 to 159,691
_c01670
PGA1_c01680: PGA1_c01680 - 50S ribosomal protein L29, at 159,897 to 160,097
_c01680
PGA1_c01690: PGA1_c01690 - 30S ribosomal protein S17, at 160,110 to 160,340
_c01690
PGA1_c01700: PGA1_c01700 - 50S ribosomal protein L14, at 160,440 to 160,808
_c01700
Position (kb) 159
160 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 158.337 kb on + strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.337 kb on + strand, within PGA1_c01650 at 158.342 kb on + strand, within PGA1_c01650 at 158.342 kb on + strand, within PGA1_c01650 at 158.345 kb on - strand, within PGA1_c01650 at 158.345 kb on - strand, within PGA1_c01650 at 158.345 kb on - strand, within PGA1_c01650 at 158.345 kb on - strand, within PGA1_c01650 at 158.347 kb on + strand, within PGA1_c01650 at 158.347 kb on + strand, within PGA1_c01650 at 158.350 kb on - strand, within PGA1_c01650 at 158.350 kb on - strand, within PGA1_c01650 at 158.397 kb on + strand, within PGA1_c01650 at 158.397 kb on + strand, within PGA1_c01650 at 158.410 kb on - strand, within PGA1_c01650 at 158.502 kb on - strand, within PGA1_c01650 at 158.561 kb on + strand, within PGA1_c01650 at 158.561 kb on + strand, within PGA1_c01650 at 158.676 kb on + strand, within PGA1_c01650 at 158.686 kb on + strand, within PGA1_c01650 at 158.744 kb on - strand, within PGA1_c01650 at 158.769 kb on - strand, within PGA1_c01650 at 158.809 kb on + strand at 158.809 kb on + strand at 158.809 kb on + strand at 158.817 kb on - strand at 158.817 kb on - strand at 158.860 kb on + strand at 158.860 kb on + strand at 158.863 kb on + strand at 158.863 kb on + strand at 158.875 kb on + strand at 158.875 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.877 kb on + strand at 158.878 kb on + strand at 158.878 kb on + strand at 158.878 kb on + strand at 158.883 kb on - strand at 158.885 kb on - strand at 158.885 kb on - strand at 158.885 kb on - strand at 158.885 kb on - strand at 158.885 kb on - strand at 158.885 kb on - strand at 158.885 kb on - strand at 158.943 kb on + strand, within PGA1_c01660 at 159.047 kb on - strand, within PGA1_c01660 at 159.056 kb on + strand, within PGA1_c01660 at 159.081 kb on + strand, within PGA1_c01660 at 159.133 kb on + strand, within PGA1_c01660 at 159.133 kb on - strand, within PGA1_c01660 at 159.146 kb on - strand, within PGA1_c01660 at 159.146 kb on - strand, within PGA1_c01660 at 159.157 kb on + strand, within PGA1_c01660 at 159.159 kb on + strand, within PGA1_c01660 at 159.164 kb on - strand, within PGA1_c01660 at 159.167 kb on - strand, within PGA1_c01660 at 159.222 kb on + strand at 159.222 kb on + strand at 159.225 kb on - strand at 159.395 kb on - strand, within PGA1_c01670 at 159.395 kb on - strand, within PGA1_c01670 at 159.436 kb on - strand, within PGA1_c01670 at 159.538 kb on + strand, within PGA1_c01670 at 159.571 kb on - strand, within PGA1_c01670 at 159.576 kb on - strand, within PGA1_c01670 at 159.616 kb on - strand, within PGA1_c01670 at 159.661 kb on - strand at 159.674 kb on - strand at 159.674 kb on - strand at 159.676 kb on + strand at 159.676 kb on + strand at 159.683 kb on + strand at 159.696 kb on + strand at 159.714 kb on + strand at 159.721 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 158,337 + PGA1_c01650 0.20 -0.4 158,337 + PGA1_c01650 0.20 -0.1 158,337 + PGA1_c01650 0.20 -0.5 158,337 + PGA1_c01650 0.20 +0.4 158,337 + PGA1_c01650 0.20 -1.9 158,337 + PGA1_c01650 0.20 -0.3 158,337 + PGA1_c01650 0.20 -0.1 158,342 + PGA1_c01650 0.21 +0.1 158,342 + PGA1_c01650 0.21 +0.9 158,345 - PGA1_c01650 0.22 +1.2 158,345 - PGA1_c01650 0.22 -0.9 158,345 - PGA1_c01650 0.22 -0.2 158,345 - PGA1_c01650 0.22 +0.6 158,347 + PGA1_c01650 0.22 +0.7 158,347 + PGA1_c01650 0.22 -2.1 158,350 - PGA1_c01650 0.22 +0.2 158,350 - PGA1_c01650 0.22 +0.0 158,397 + PGA1_c01650 0.30 -0.5 158,397 + PGA1_c01650 0.30 +0.6 158,410 - PGA1_c01650 0.32 -1.0 158,502 - PGA1_c01650 0.47 -0.1 158,561 + PGA1_c01650 0.56 -0.8 158,561 + PGA1_c01650 0.56 -0.2 158,676 + PGA1_c01650 0.75 -0.3 158,686 + PGA1_c01650 0.76 -0.7 158,744 - PGA1_c01650 0.86 -0.5 158,769 - PGA1_c01650 0.90 -1.0 158,809 + +0.3 158,809 + +0.2 158,809 + -0.7 158,817 - -0.1 158,817 - +0.9 158,860 + +0.4 158,860 + -0.5 158,863 + -0.4 158,863 + -0.1 158,875 + +1.1 158,875 + -1.0 158,877 + +1.0 158,877 + -0.3 158,877 + -0.3 158,877 + +1.7 158,877 + +0.8 158,877 + +0.2 158,877 + -0.8 158,877 + +0.5 158,877 + +1.0 158,877 + -0.2 158,877 + -0.9 158,877 + +0.3 158,878 + +1.3 158,878 + -0.4 158,878 + +0.4 158,883 - +0.7 158,885 - -0.2 158,885 - +0.2 158,885 - +0.7 158,885 - -1.4 158,885 - -0.0 158,885 - -0.5 158,885 - +0.6 158,943 + PGA1_c01660 0.13 -1.2 159,047 - PGA1_c01660 0.43 +0.9 159,056 + PGA1_c01660 0.46 -0.2 159,081 + PGA1_c01660 0.53 +1.3 159,133 + PGA1_c01660 0.68 +0.2 159,133 - PGA1_c01660 0.68 -1.0 159,146 - PGA1_c01660 0.72 +0.2 159,146 - PGA1_c01660 0.72 -0.9 159,157 + PGA1_c01660 0.75 -0.0 159,159 + PGA1_c01660 0.75 -0.4 159,164 - PGA1_c01660 0.77 +0.0 159,167 - PGA1_c01660 0.78 +1.6 159,222 + +0.2 159,222 + -1.3 159,225 - +1.7 159,395 - PGA1_c01670 0.21 -0.0 159,395 - PGA1_c01670 0.21 -0.2 159,436 - PGA1_c01670 0.32 -0.9 159,538 + PGA1_c01670 0.59 -1.9 159,571 - PGA1_c01670 0.68 -2.1 159,576 - PGA1_c01670 0.69 -0.8 159,616 - PGA1_c01670 0.80 +1.0 159,661 - +2.6 159,674 - +0.1 159,674 - -3.4 159,676 + -0.1 159,676 + -0.3 159,683 + +1.4 159,696 + +1.0 159,714 + -0.4 159,721 + +0.7
Or see this region's nucleotide sequence