Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1464

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1462 and Psest_1463 are separated by 3 nucleotidesPsest_1463 and Psest_1464 overlap by 4 nucleotidesPsest_1464 and Psest_1465 are separated by 75 nucleotides Psest_1462: Psest_1462 - 3-oxoacyl-[acyl-carrier-protein] synthase III, at 1,570,051 to 1,571,172 _1462 Psest_1463: Psest_1463 - SufE protein probably involved in Fe-S center assembly, at 1,571,176 to 1,571,598 _1463 Psest_1464: Psest_1464 - Selenocysteine lyase, at 1,571,595 to 1,572,800 _1464 Psest_1465: Psest_1465 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 1,572,876 to 1,573,910 _1465 Position (kb) 1571 1572 1573Strain fitness (log2 ratio) -2 -1 0 1at 1570.666 kb on - strand, within Psest_1462at 1570.666 kb on - strand, within Psest_1462at 1571.036 kb on - strand, within Psest_1462at 1571.036 kb on - strand, within Psest_1462at 1571.036 kb on - strand, within Psest_1462at 1571.036 kb on - strand, within Psest_1462at 1571.036 kb on - strand, within Psest_1462at 1571.212 kb on - strandat 1571.469 kb on + strand, within Psest_1463at 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.662 kb on + strandat 1571.663 kb on - strandat 1571.663 kb on - strandat 1571.663 kb on - strandat 1571.663 kb on - strandat 1571.663 kb on - strandat 1571.663 kb on - strandat 1571.663 kb on - strandat 1571.663 kb on - strandat 1571.663 kb on - strandat 1571.663 kb on - strandat 1571.663 kb on - strandat 1571.663 kb on - strandat 1571.664 kb on + strandat 1571.665 kb on - strandat 1571.935 kb on + strand, within Psest_1464at 1572.028 kb on + strand, within Psest_1464at 1572.029 kb on - strand, within Psest_1464at 1572.081 kb on + strand, within Psest_1464at 1572.100 kb on + strand, within Psest_1464at 1572.101 kb on - strand, within Psest_1464at 1572.151 kb on + strand, within Psest_1464at 1572.151 kb on + strand, within Psest_1464at 1572.151 kb on + strand, within Psest_1464at 1572.151 kb on + strand, within Psest_1464at 1572.152 kb on - strand, within Psest_1464at 1572.152 kb on - strand, within Psest_1464at 1572.152 kb on - strand, within Psest_1464at 1572.152 kb on - strand, within Psest_1464at 1572.152 kb on - strand, within Psest_1464at 1572.152 kb on - strand, within Psest_1464at 1572.253 kb on - strand, within Psest_1464at 1572.253 kb on - strand, within Psest_1464at 1572.253 kb on - strand, within Psest_1464at 1572.667 kb on + strand, within Psest_1464at 1572.667 kb on + strand, within Psest_1464at 1572.667 kb on + strand, within Psest_1464at 1572.667 kb on + strand, within Psest_1464at 1572.667 kb on + strand, within Psest_1464at 1572.668 kb on - strand, within Psest_1464at 1572.668 kb on - strand, within Psest_1464at 1572.670 kb on + strand, within Psest_1464at 1572.730 kb on + strandat 1572.730 kb on + strandat 1572.882 kb on - strandat 1572.882 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,570,666 - Psest_1462 0.55 +0.2
1,570,666 - Psest_1462 0.55 -0.9
1,571,036 - Psest_1462 0.88 -1.4
1,571,036 - Psest_1462 0.88 -1.1
1,571,036 - Psest_1462 0.88 -1.7
1,571,036 - Psest_1462 0.88 -1.5
1,571,036 - Psest_1462 0.88 -0.0
1,571,212 - -0.2
1,571,469 + Psest_1463 0.69 -0.1
1,571,662 + +0.6
1,571,662 + -0.2
1,571,662 + -0.5
1,571,662 + -0.2
1,571,662 + +0.1
1,571,662 + -0.4
1,571,662 + +0.7
1,571,662 + +0.1
1,571,662 + -1.1
1,571,662 + +0.2
1,571,662 + -2.7
1,571,662 + -0.7
1,571,662 + +0.7
1,571,662 + -0.9
1,571,663 - +0.5
1,571,663 - +0.3
1,571,663 - -2.4
1,571,663 - -1.1
1,571,663 - -1.3
1,571,663 - +0.7
1,571,663 - +0.1
1,571,663 - -1.2
1,571,663 - -0.3
1,571,663 - +0.1
1,571,663 - +0.4
1,571,663 - +0.4
1,571,664 + +0.5
1,571,665 - -0.8
1,571,935 + Psest_1464 0.28 -0.2
1,572,028 + Psest_1464 0.36 -0.6
1,572,029 - Psest_1464 0.36 -1.7
1,572,081 + Psest_1464 0.40 -0.1
1,572,100 + Psest_1464 0.42 +0.1
1,572,101 - Psest_1464 0.42 -0.8
1,572,151 + Psest_1464 0.46 -0.5
1,572,151 + Psest_1464 0.46 -0.6
1,572,151 + Psest_1464 0.46 -0.6
1,572,151 + Psest_1464 0.46 -0.5
1,572,152 - Psest_1464 0.46 +0.6
1,572,152 - Psest_1464 0.46 +0.6
1,572,152 - Psest_1464 0.46 -0.7
1,572,152 - Psest_1464 0.46 +0.0
1,572,152 - Psest_1464 0.46 -0.4
1,572,152 - Psest_1464 0.46 -0.4
1,572,253 - Psest_1464 0.55 -0.4
1,572,253 - Psest_1464 0.55 +0.6
1,572,253 - Psest_1464 0.55 -0.5
1,572,667 + Psest_1464 0.89 -0.1
1,572,667 + Psest_1464 0.89 -0.1
1,572,667 + Psest_1464 0.89 -1.5
1,572,667 + Psest_1464 0.89 -0.2
1,572,667 + Psest_1464 0.89 -0.4
1,572,668 - Psest_1464 0.89 -0.5
1,572,668 - Psest_1464 0.89 +1.1
1,572,670 + Psest_1464 0.89 -0.6
1,572,730 + -0.2
1,572,730 + -1.1
1,572,882 - +0.0
1,572,882 - -0.3

Or see this region's nucleotide sequence