Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14050 and PGA1_c14060 are separated by 110 nucleotides PGA1_c14060 and PGA1_c14070 are separated by 28 nucleotides
PGA1_c14050: PGA1_c14050 - inner membrane protein, at 1,456,053 to 1,457,363
_c14050
PGA1_c14060: PGA1_c14060 - tyrosine recombinase XerD, at 1,457,474 to 1,458,487
_c14060
PGA1_c14070: PGA1_c14070 - hypothetical protein, at 1,458,516 to 1,460,189
_c14070
Position (kb)
1457
1458
1459 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1457.366 kb on - strand at 1457.366 kb on - strand at 1457.433 kb on + strand at 1457.433 kb on - strand at 1457.498 kb on - strand at 1457.520 kb on - strand at 1457.520 kb on - strand at 1457.629 kb on - strand, within PGA1_c14060 at 1457.692 kb on + strand, within PGA1_c14060 at 1457.700 kb on - strand, within PGA1_c14060 at 1457.928 kb on + strand, within PGA1_c14060 at 1457.936 kb on - strand, within PGA1_c14060 at 1458.015 kb on + strand, within PGA1_c14060 at 1458.120 kb on + strand, within PGA1_c14060 at 1458.140 kb on - strand, within PGA1_c14060 at 1458.150 kb on + strand, within PGA1_c14060 at 1458.212 kb on - strand, within PGA1_c14060 at 1458.248 kb on - strand, within PGA1_c14060 at 1458.259 kb on - strand, within PGA1_c14060 at 1458.482 kb on + strand at 1458.482 kb on + strand at 1458.490 kb on - strand at 1458.490 kb on - strand at 1458.490 kb on - strand at 1458.710 kb on + strand, within PGA1_c14070 at 1458.768 kb on - strand, within PGA1_c14070 at 1458.781 kb on - strand, within PGA1_c14070 at 1458.789 kb on - strand, within PGA1_c14070 at 1458.789 kb on - strand at 1458.816 kb on + strand, within PGA1_c14070 at 1459.105 kb on + strand, within PGA1_c14070 at 1459.105 kb on + strand, within PGA1_c14070 at 1459.111 kb on + strand, within PGA1_c14070 at 1459.258 kb on + strand, within PGA1_c14070 at 1459.275 kb on + strand, within PGA1_c14070 at 1459.414 kb on + strand, within PGA1_c14070 at 1459.467 kb on - strand, within PGA1_c14070 at 1459.485 kb on + strand, within PGA1_c14070
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 1,457,366 - -2.5 1,457,366 - -1.5 1,457,433 + +0.5 1,457,433 - +0.9 1,457,498 - +0.5 1,457,520 - +0.4 1,457,520 - -2.5 1,457,629 - PGA1_c14060 0.15 +0.5 1,457,692 + PGA1_c14060 0.21 +0.1 1,457,700 - PGA1_c14060 0.22 -0.9 1,457,928 + PGA1_c14060 0.45 -0.1 1,457,936 - PGA1_c14060 0.46 -1.9 1,458,015 + PGA1_c14060 0.53 -1.1 1,458,120 + PGA1_c14060 0.64 -0.5 1,458,140 - PGA1_c14060 0.66 -0.9 1,458,150 + PGA1_c14060 0.67 +0.5 1,458,212 - PGA1_c14060 0.73 -0.1 1,458,248 - PGA1_c14060 0.76 -2.8 1,458,259 - PGA1_c14060 0.77 +0.5 1,458,482 + +0.1 1,458,482 + -0.5 1,458,490 - -0.5 1,458,490 - +1.2 1,458,490 - +0.8 1,458,710 + PGA1_c14070 0.12 +2.1 1,458,768 - PGA1_c14070 0.15 +0.2 1,458,781 - PGA1_c14070 0.16 -0.5 1,458,789 - PGA1_c14070 0.16 +0.7 1,458,789 - +1.5 1,458,816 + PGA1_c14070 0.18 +2.8 1,459,105 + PGA1_c14070 0.35 -1.1 1,459,105 + PGA1_c14070 0.35 +0.5 1,459,111 + PGA1_c14070 0.36 +0.5 1,459,258 + PGA1_c14070 0.44 -1.1 1,459,275 + PGA1_c14070 0.45 -1.5 1,459,414 + PGA1_c14070 0.54 +0.5 1,459,467 - PGA1_c14070 0.57 +0.5 1,459,485 + PGA1_c14070 0.58 +0.5
Or see this region's nucleotide sequence