Experiment: L-Isoleucine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1327 and Psest_1328 are separated by 151 nucleotides Psest_1328 and Psest_1329 are separated by 1 nucleotides Psest_1329 and Psest_1330 overlap by 4 nucleotides
Psest_1327: Psest_1327 - Superfamily II DNA/RNA helicases, SNF2 family, at 1,428,699 to 1,431,548
_1327
Psest_1328: Psest_1328 - hypothetical protein, at 1,431,700 to 1,431,996
_1328
Psest_1329: Psest_1329 - Alkylated DNA repair protein, at 1,431,998 to 1,432,615
_1329
Psest_1330: Psest_1330 - hypothetical protein, at 1,432,612 to 1,432,773
_1330
Position (kb)
1431
1432 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1430.777 kb on + strand, within Psest_1327 at 1430.777 kb on + strand, within Psest_1327 at 1431.161 kb on - strand, within Psest_1327 at 1431.295 kb on + strand at 1431.535 kb on + strand at 1431.535 kb on + strand at 1431.535 kb on + strand at 1431.535 kb on + strand at 1431.535 kb on + strand at 1431.535 kb on + strand at 1431.536 kb on - strand at 1431.536 kb on - strand at 1431.536 kb on - strand at 1431.639 kb on - strand at 1431.639 kb on - strand at 1431.682 kb on + strand at 1431.685 kb on - strand at 1431.685 kb on - strand at 1431.726 kb on - strand at 1431.726 kb on - strand at 1432.151 kb on + strand, within Psest_1329 at 1432.151 kb on + strand, within Psest_1329 at 1432.151 kb on + strand, within Psest_1329 at 1432.151 kb on + strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.152 kb on - strand, within Psest_1329 at 1432.217 kb on + strand, within Psest_1329 at 1432.477 kb on - strand, within Psest_1329 at 1432.477 kb on - strand, within Psest_1329 at 1432.477 kb on - strand, within Psest_1329 at 1432.799 kb on + strand at 1432.800 kb on - strand at 1432.800 kb on - strand at 1432.823 kb on + strand at 1432.824 kb on - strand at 1432.824 kb on - strand at 1432.867 kb on + strand at 1432.867 kb on + strand at 1432.867 kb on + strand at 1432.867 kb on + strand at 1432.870 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Isoleucine (N) remove 1,430,777 + Psest_1327 0.73 -0.3 1,430,777 + Psest_1327 0.73 +0.0 1,431,161 - Psest_1327 0.86 +0.1 1,431,295 + +1.1 1,431,535 + -1.3 1,431,535 + -2.0 1,431,535 + -0.5 1,431,535 + -0.1 1,431,535 + -1.0 1,431,535 + -1.3 1,431,536 - +0.8 1,431,536 - -0.1 1,431,536 - +0.1 1,431,639 - -2.0 1,431,639 - +1.0 1,431,682 + -1.0 1,431,685 - -0.1 1,431,685 - +0.4 1,431,726 - -0.3 1,431,726 - +0.1 1,432,151 + Psest_1329 0.25 +1.1 1,432,151 + Psest_1329 0.25 -1.2 1,432,151 + Psest_1329 0.25 -1.1 1,432,151 + Psest_1329 0.25 -0.4 1,432,152 - Psest_1329 0.25 +0.3 1,432,152 - Psest_1329 0.25 -0.3 1,432,152 - Psest_1329 0.25 -0.4 1,432,152 - Psest_1329 0.25 -0.3 1,432,152 - Psest_1329 0.25 +0.7 1,432,152 - Psest_1329 0.25 -0.0 1,432,152 - Psest_1329 0.25 -0.9 1,432,152 - Psest_1329 0.25 -0.2 1,432,152 - Psest_1329 0.25 +0.5 1,432,217 + Psest_1329 0.35 -0.7 1,432,477 - Psest_1329 0.78 -0.5 1,432,477 - Psest_1329 0.78 -1.4 1,432,477 - Psest_1329 0.78 +0.8 1,432,799 + -0.7 1,432,800 - -1.6 1,432,800 - -0.4 1,432,823 + -0.7 1,432,824 - +1.9 1,432,824 - +0.7 1,432,867 + -0.8 1,432,867 + -0.3 1,432,867 + +0.1 1,432,867 + +0.5 1,432,870 - -1.2
Or see this region's nucleotide sequence