Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1328

Experiment: L-Isoleucine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1327 and Psest_1328 are separated by 151 nucleotidesPsest_1328 and Psest_1329 are separated by 1 nucleotidesPsest_1329 and Psest_1330 overlap by 4 nucleotides Psest_1327: Psest_1327 - Superfamily II DNA/RNA helicases, SNF2 family, at 1,428,699 to 1,431,548 _1327 Psest_1328: Psest_1328 - hypothetical protein, at 1,431,700 to 1,431,996 _1328 Psest_1329: Psest_1329 - Alkylated DNA repair protein, at 1,431,998 to 1,432,615 _1329 Psest_1330: Psest_1330 - hypothetical protein, at 1,432,612 to 1,432,773 _1330 Position (kb) 1431 1432Strain fitness (log2 ratio) -2 -1 0 1 2at 1430.777 kb on + strand, within Psest_1327at 1430.777 kb on + strand, within Psest_1327at 1431.161 kb on - strand, within Psest_1327at 1431.295 kb on + strandat 1431.535 kb on + strandat 1431.535 kb on + strandat 1431.535 kb on + strandat 1431.535 kb on + strandat 1431.535 kb on + strandat 1431.535 kb on + strandat 1431.536 kb on - strandat 1431.536 kb on - strandat 1431.536 kb on - strandat 1431.639 kb on - strandat 1431.639 kb on - strandat 1431.682 kb on + strandat 1431.685 kb on - strandat 1431.685 kb on - strandat 1431.726 kb on - strandat 1431.726 kb on - strandat 1432.151 kb on + strand, within Psest_1329at 1432.151 kb on + strand, within Psest_1329at 1432.151 kb on + strand, within Psest_1329at 1432.151 kb on + strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.152 kb on - strand, within Psest_1329at 1432.217 kb on + strand, within Psest_1329at 1432.477 kb on - strand, within Psest_1329at 1432.477 kb on - strand, within Psest_1329at 1432.477 kb on - strand, within Psest_1329at 1432.799 kb on + strandat 1432.800 kb on - strandat 1432.800 kb on - strandat 1432.823 kb on + strandat 1432.824 kb on - strandat 1432.824 kb on - strandat 1432.867 kb on + strandat 1432.867 kb on + strandat 1432.867 kb on + strandat 1432.867 kb on + strandat 1432.870 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Isoleucine (N)
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1,430,777 + Psest_1327 0.73 -0.3
1,430,777 + Psest_1327 0.73 +0.0
1,431,161 - Psest_1327 0.86 +0.1
1,431,295 + +1.1
1,431,535 + -1.3
1,431,535 + -2.0
1,431,535 + -0.5
1,431,535 + -0.1
1,431,535 + -1.0
1,431,535 + -1.3
1,431,536 - +0.8
1,431,536 - -0.1
1,431,536 - +0.1
1,431,639 - -2.0
1,431,639 - +1.0
1,431,682 + -1.0
1,431,685 - -0.1
1,431,685 - +0.4
1,431,726 - -0.3
1,431,726 - +0.1
1,432,151 + Psest_1329 0.25 +1.1
1,432,151 + Psest_1329 0.25 -1.2
1,432,151 + Psest_1329 0.25 -1.1
1,432,151 + Psest_1329 0.25 -0.4
1,432,152 - Psest_1329 0.25 +0.3
1,432,152 - Psest_1329 0.25 -0.3
1,432,152 - Psest_1329 0.25 -0.4
1,432,152 - Psest_1329 0.25 -0.3
1,432,152 - Psest_1329 0.25 +0.7
1,432,152 - Psest_1329 0.25 -0.0
1,432,152 - Psest_1329 0.25 -0.9
1,432,152 - Psest_1329 0.25 -0.2
1,432,152 - Psest_1329 0.25 +0.5
1,432,217 + Psest_1329 0.35 -0.7
1,432,477 - Psest_1329 0.78 -0.5
1,432,477 - Psest_1329 0.78 -1.4
1,432,477 - Psest_1329 0.78 +0.8
1,432,799 + -0.7
1,432,800 - -1.6
1,432,800 - -0.4
1,432,823 + -0.7
1,432,824 - +1.9
1,432,824 - +0.7
1,432,867 + -0.8
1,432,867 + -0.3
1,432,867 + +0.1
1,432,867 + +0.5
1,432,870 - -1.2

Or see this region's nucleotide sequence