Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01180 and PGA1_c01190 are separated by 9 nucleotides PGA1_c01190 and PGA1_c01200 are separated by 0 nucleotides PGA1_c01200 and PGA1_c01210 are separated by 34 nucleotides
PGA1_c01180: PGA1_c01180 - Predicted P-loop-containing kinase, at 111,462 to 112,352
_c01180
PGA1_c01190: PGA1_c01190 - putative PTS system fructose subfamily IIA component, at 112,362 to 112,769
_c01190
PGA1_c01200: PGA1_c01200 - putative phosphocarrier, HPr family, at 112,770 to 113,039
_c01200
PGA1_c01210: PGA1_c01210 - Putative hemolysin, at 113,074 to 113,964
_c01210
Position (kb) 112
113
114 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 111.802 kb on + strand, within PGA1_c01180 at 111.810 kb on - strand, within PGA1_c01180 at 111.861 kb on - strand, within PGA1_c01180 at 111.954 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.968 kb on + strand, within PGA1_c01180 at 111.975 kb on + strand, within PGA1_c01180 at 111.976 kb on - strand, within PGA1_c01180 at 111.976 kb on - strand, within PGA1_c01180 at 111.976 kb on - strand, within PGA1_c01180 at 111.976 kb on - strand, within PGA1_c01180 at 111.976 kb on - strand, within PGA1_c01180 at 112.058 kb on + strand, within PGA1_c01180 at 112.060 kb on - strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.084 kb on + strand, within PGA1_c01180 at 112.087 kb on - strand, within PGA1_c01180 at 112.092 kb on - strand, within PGA1_c01180 at 112.092 kb on - strand, within PGA1_c01180 at 112.092 kb on - strand, within PGA1_c01180 at 112.104 kb on + strand, within PGA1_c01180 at 112.112 kb on + strand, within PGA1_c01180 at 112.122 kb on + strand, within PGA1_c01180 at 112.242 kb on + strand, within PGA1_c01180 at 112.250 kb on - strand, within PGA1_c01180 at 112.255 kb on - strand, within PGA1_c01180 at 112.263 kb on - strand, within PGA1_c01180 at 112.300 kb on + strand at 112.308 kb on - strand at 112.312 kb on + strand at 112.781 kb on - strand at 112.835 kb on + strand, within PGA1_c01200 at 112.835 kb on + strand, within PGA1_c01200 at 112.872 kb on - strand, within PGA1_c01200 at 112.933 kb on + strand, within PGA1_c01200 at 112.988 kb on + strand, within PGA1_c01200 at 113.035 kb on + strand at 113.063 kb on + strand at 113.063 kb on + strand at 113.063 kb on + strand at 113.071 kb on - strand at 113.071 kb on - strand at 113.105 kb on - strand at 113.117 kb on + strand at 113.117 kb on + strand at 113.217 kb on + strand, within PGA1_c01210 at 113.265 kb on + strand, within PGA1_c01210 at 113.349 kb on + strand, within PGA1_c01210 at 113.357 kb on - strand, within PGA1_c01210 at 113.372 kb on + strand, within PGA1_c01210 at 113.441 kb on - strand, within PGA1_c01210 at 113.457 kb on - strand, within PGA1_c01210 at 113.474 kb on + strand, within PGA1_c01210 at 113.479 kb on + strand, within PGA1_c01210 at 113.482 kb on - strand, within PGA1_c01210 at 113.507 kb on - strand, within PGA1_c01210 at 113.571 kb on - strand, within PGA1_c01210 at 113.814 kb on + strand, within PGA1_c01210 at 113.912 kb on + strand at 113.950 kb on + strand at 114.027 kb on - strand at 114.027 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 111,802 + PGA1_c01180 0.38 -0.3 111,810 - PGA1_c01180 0.39 -0.6 111,861 - PGA1_c01180 0.45 -1.1 111,954 + PGA1_c01180 0.55 -0.2 111,968 + PGA1_c01180 0.57 +0.4 111,968 + PGA1_c01180 0.57 +1.0 111,968 + PGA1_c01180 0.57 -0.4 111,968 + PGA1_c01180 0.57 -0.0 111,968 + PGA1_c01180 0.57 +0.6 111,968 + PGA1_c01180 0.57 -1.1 111,968 + PGA1_c01180 0.57 +0.3 111,968 + PGA1_c01180 0.57 +0.1 111,968 + PGA1_c01180 0.57 -0.4 111,968 + PGA1_c01180 0.57 +0.1 111,975 + PGA1_c01180 0.58 +0.0 111,976 - PGA1_c01180 0.58 +0.9 111,976 - PGA1_c01180 0.58 -1.3 111,976 - PGA1_c01180 0.58 -0.2 111,976 - PGA1_c01180 0.58 -1.3 111,976 - PGA1_c01180 0.58 +0.6 112,058 + PGA1_c01180 0.67 +0.7 112,060 - PGA1_c01180 0.67 +1.4 112,084 + PGA1_c01180 0.70 +2.2 112,084 + PGA1_c01180 0.70 +1.0 112,084 + PGA1_c01180 0.70 -0.3 112,084 + PGA1_c01180 0.70 +0.8 112,084 + PGA1_c01180 0.70 +1.0 112,084 + PGA1_c01180 0.70 +0.5 112,084 + PGA1_c01180 0.70 +0.8 112,084 + PGA1_c01180 0.70 -0.9 112,084 + PGA1_c01180 0.70 +0.8 112,087 - PGA1_c01180 0.70 +0.5 112,092 - PGA1_c01180 0.71 -3.0 112,092 - PGA1_c01180 0.71 -0.9 112,092 - PGA1_c01180 0.71 +0.3 112,104 + PGA1_c01180 0.72 +0.7 112,112 + PGA1_c01180 0.73 -1.9 112,122 + PGA1_c01180 0.74 -1.7 112,242 + PGA1_c01180 0.88 -0.3 112,250 - PGA1_c01180 0.88 +0.2 112,255 - PGA1_c01180 0.89 -0.7 112,263 - PGA1_c01180 0.90 -0.6 112,300 + +0.4 112,308 - -1.3 112,312 + -2.2 112,781 - +0.6 112,835 + PGA1_c01200 0.24 -0.6 112,835 + PGA1_c01200 0.24 -0.9 112,872 - PGA1_c01200 0.38 -0.6 112,933 + PGA1_c01200 0.60 -0.8 112,988 + PGA1_c01200 0.81 +0.2 113,035 + -2.1 113,063 + -0.8 113,063 + -2.4 113,063 + +0.1 113,071 - +0.2 113,071 - -1.5 113,105 - -0.5 113,117 + -2.3 113,117 + -0.2 113,217 + PGA1_c01210 0.16 -1.4 113,265 + PGA1_c01210 0.21 +0.0 113,349 + PGA1_c01210 0.31 +0.4 113,357 - PGA1_c01210 0.32 -1.0 113,372 + PGA1_c01210 0.33 -0.1 113,441 - PGA1_c01210 0.41 -0.2 113,457 - PGA1_c01210 0.43 +1.2 113,474 + PGA1_c01210 0.45 -1.4 113,479 + PGA1_c01210 0.45 -0.9 113,482 - PGA1_c01210 0.46 +1.2 113,507 - PGA1_c01210 0.49 -1.9 113,571 - PGA1_c01210 0.56 +1.5 113,814 + PGA1_c01210 0.83 -0.3 113,912 + -2.3 113,950 + +0.5 114,027 - +0.6 114,027 - -0.4
Or see this region's nucleotide sequence