Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08440 and PGA1_c08450 are separated by 109 nucleotides PGA1_c08450 and PGA1_c08460 overlap by 8 nucleotides PGA1_c08460 and PGA1_c08470 are separated by 17 nucleotides PGA1_c08470 and PGA1_c08480 are separated by 30 nucleotides
PGA1_c08440: PGA1_c08440 - Helix-turn-helix., at 873,641 to 874,501
_c08440
PGA1_c08450: PGA1_c08450 - Predicted membrane protein (DUF2061)., at 874,611 to 874,817
_c08450
PGA1_c08460: PGA1_c08460 - putative fatty acid desaturase, at 874,810 to 875,754
_c08460
PGA1_c08470: PGA1_c08470 - putative integral membrane protein, at 875,772 to 876,674
_c08470
PGA1_c08480: PGA1_c08480 - NUDIX hydrolase-like protein, at 876,705 to 877,472
_c08480
Position (kb) 874
875
876 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 873.815 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.831 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.843 kb on + strand, within PGA1_c08440 at 873.882 kb on + strand, within PGA1_c08440 at 873.882 kb on + strand, within PGA1_c08440 at 873.890 kb on - strand, within PGA1_c08440 at 873.890 kb on - strand, within PGA1_c08440 at 873.890 kb on - strand, within PGA1_c08440 at 873.900 kb on - strand, within PGA1_c08440 at 873.958 kb on + strand, within PGA1_c08440 at 873.958 kb on + strand, within PGA1_c08440 at 873.966 kb on - strand, within PGA1_c08440 at 874.057 kb on + strand, within PGA1_c08440 at 874.078 kb on - strand, within PGA1_c08440 at 874.297 kb on + strand, within PGA1_c08440 at 874.398 kb on + strand, within PGA1_c08440 at 874.430 kb on + strand at 874.445 kb on + strand at 874.451 kb on - strand at 874.453 kb on - strand at 874.453 kb on - strand at 874.472 kb on + strand at 874.570 kb on + strand at 874.570 kb on + strand at 874.578 kb on - strand at 874.578 kb on - strand at 874.578 kb on - strand at 874.578 kb on - strand at 874.578 kb on - strand at 874.722 kb on + strand, within PGA1_c08450 at 874.778 kb on + strand, within PGA1_c08450 at 874.783 kb on + strand, within PGA1_c08450 at 875.012 kb on + strand, within PGA1_c08460 at 875.012 kb on + strand, within PGA1_c08460 at 875.020 kb on - strand, within PGA1_c08460 at 875.020 kb on - strand, within PGA1_c08460 at 875.020 kb on - strand, within PGA1_c08460 at 875.156 kb on + strand, within PGA1_c08460 at 875.156 kb on + strand, within PGA1_c08460 at 875.162 kb on - strand, within PGA1_c08460 at 875.162 kb on - strand, within PGA1_c08460 at 875.214 kb on + strand, within PGA1_c08460 at 875.214 kb on + strand, within PGA1_c08460 at 875.270 kb on + strand, within PGA1_c08460 at 875.270 kb on + strand, within PGA1_c08460 at 875.270 kb on + strand, within PGA1_c08460 at 875.270 kb on + strand, within PGA1_c08460 at 875.273 kb on - strand, within PGA1_c08460 at 875.278 kb on - strand, within PGA1_c08460 at 875.278 kb on - strand, within PGA1_c08460 at 875.281 kb on + strand, within PGA1_c08460 at 875.283 kb on - strand, within PGA1_c08460 at 875.299 kb on + strand, within PGA1_c08460 at 875.420 kb on - strand, within PGA1_c08460 at 875.438 kb on + strand, within PGA1_c08460 at 875.526 kb on - strand, within PGA1_c08460 at 875.616 kb on + strand, within PGA1_c08460 at 875.619 kb on + strand, within PGA1_c08460 at 875.635 kb on - strand, within PGA1_c08460 at 875.635 kb on - strand, within PGA1_c08460 at 875.663 kb on + strand at 875.686 kb on + strand at 875.694 kb on - strand at 875.696 kb on + strand at 875.696 kb on + strand at 875.696 kb on + strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.704 kb on - strand at 875.708 kb on + strand at 875.728 kb on - strand at 875.746 kb on - strand at 875.824 kb on + strand at 875.851 kb on + strand at 875.851 kb on + strand at 875.859 kb on - strand at 875.861 kb on + strand at 875.861 kb on + strand at 875.861 kb on + strand at 875.861 kb on + strand at 875.896 kb on + strand, within PGA1_c08470 at 875.904 kb on + strand, within PGA1_c08470 at 875.909 kb on + strand, within PGA1_c08470 at 875.909 kb on + strand, within PGA1_c08470 at 875.912 kb on - strand, within PGA1_c08470 at 875.917 kb on - strand, within PGA1_c08470 at 875.932 kb on + strand, within PGA1_c08470 at 875.946 kb on + strand, within PGA1_c08470 at 875.996 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.006 kb on + strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.014 kb on - strand, within PGA1_c08470 at 876.120 kb on - strand, within PGA1_c08470 at 876.130 kb on - strand, within PGA1_c08470 at 876.149 kb on - strand, within PGA1_c08470 at 876.189 kb on - strand, within PGA1_c08470 at 876.199 kb on - strand, within PGA1_c08470 at 876.199 kb on - strand, within PGA1_c08470 at 876.206 kb on + strand, within PGA1_c08470 at 876.208 kb on + strand, within PGA1_c08470 at 876.228 kb on + strand, within PGA1_c08470 at 876.249 kb on + strand, within PGA1_c08470 at 876.301 kb on - strand, within PGA1_c08470 at 876.349 kb on + strand, within PGA1_c08470 at 876.357 kb on - strand, within PGA1_c08470 at 876.386 kb on + strand, within PGA1_c08470 at 876.403 kb on - strand, within PGA1_c08470 at 876.423 kb on - strand, within PGA1_c08470 at 876.434 kb on + strand, within PGA1_c08470 at 876.463 kb on + strand, within PGA1_c08470 at 876.471 kb on - strand, within PGA1_c08470 at 876.540 kb on + strand, within PGA1_c08470 at 876.549 kb on - strand, within PGA1_c08470 at 876.704 kb on - strand at 876.724 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 873,815 + PGA1_c08440 0.20 -0.2 873,828 + PGA1_c08440 0.22 -0.5 873,828 + PGA1_c08440 0.22 +0.8 873,828 + PGA1_c08440 0.22 +0.3 873,828 + PGA1_c08440 0.22 -0.8 873,828 + PGA1_c08440 0.22 +0.5 873,828 + PGA1_c08440 0.22 +1.3 873,828 + PGA1_c08440 0.22 +1.2 873,831 - PGA1_c08440 0.22 -0.6 873,836 - PGA1_c08440 0.23 -0.0 873,836 - PGA1_c08440 0.23 +0.2 873,836 - PGA1_c08440 0.23 -2.3 873,836 - PGA1_c08440 0.23 -2.6 873,836 - PGA1_c08440 0.23 +0.5 873,843 + PGA1_c08440 0.23 -1.7 873,882 + PGA1_c08440 0.28 +0.2 873,882 + PGA1_c08440 0.28 +0.0 873,890 - PGA1_c08440 0.29 +2.1 873,890 - PGA1_c08440 0.29 -0.8 873,890 - PGA1_c08440 0.29 -0.5 873,900 - PGA1_c08440 0.30 -0.3 873,958 + PGA1_c08440 0.37 -1.9 873,958 + PGA1_c08440 0.37 -0.9 873,966 - PGA1_c08440 0.38 -0.2 874,057 + PGA1_c08440 0.48 -1.5 874,078 - PGA1_c08440 0.51 -0.5 874,297 + PGA1_c08440 0.76 -0.7 874,398 + PGA1_c08440 0.88 +1.5 874,430 + -0.2 874,445 + -1.3 874,451 - +0.5 874,453 - -1.7 874,453 - +1.6 874,472 + +1.2 874,570 + -1.2 874,570 + -3.2 874,578 - -0.3 874,578 - -0.2 874,578 - +1.2 874,578 - -1.6 874,578 - -0.4 874,722 + PGA1_c08450 0.54 +0.4 874,778 + PGA1_c08450 0.81 +0.5 874,783 + PGA1_c08450 0.83 -0.7 875,012 + PGA1_c08460 0.21 -0.4 875,012 + PGA1_c08460 0.21 -0.2 875,020 - PGA1_c08460 0.22 -0.2 875,020 - PGA1_c08460 0.22 -1.8 875,020 - PGA1_c08460 0.22 -1.5 875,156 + PGA1_c08460 0.37 -0.8 875,156 + PGA1_c08460 0.37 -1.7 875,162 - PGA1_c08460 0.37 -1.5 875,162 - PGA1_c08460 0.37 +0.6 875,214 + PGA1_c08460 0.43 -1.1 875,214 + PGA1_c08460 0.43 +0.4 875,270 + PGA1_c08460 0.49 -2.2 875,270 + PGA1_c08460 0.49 +0.8 875,270 + PGA1_c08460 0.49 -0.7 875,270 + PGA1_c08460 0.49 -0.4 875,273 - PGA1_c08460 0.49 -1.4 875,278 - PGA1_c08460 0.50 +0.3 875,278 - PGA1_c08460 0.50 -1.3 875,281 + PGA1_c08460 0.50 -0.4 875,283 - PGA1_c08460 0.50 +1.2 875,299 + PGA1_c08460 0.52 -0.3 875,420 - PGA1_c08460 0.65 +0.7 875,438 + PGA1_c08460 0.66 +0.7 875,526 - PGA1_c08460 0.76 -0.2 875,616 + PGA1_c08460 0.85 -2.6 875,619 + PGA1_c08460 0.86 -1.2 875,635 - PGA1_c08460 0.87 -0.0 875,635 - PGA1_c08460 0.87 +1.1 875,663 + -0.0 875,686 + -1.0 875,694 - -0.6 875,696 + -1.3 875,696 + +0.1 875,696 + +1.4 875,704 - +0.8 875,704 - -0.2 875,704 - -0.7 875,704 - +0.2 875,704 - +0.8 875,704 - +0.8 875,704 - -2.6 875,704 - -1.8 875,704 - -1.2 875,708 + -0.2 875,728 - +1.3 875,746 - +0.3 875,824 + -2.0 875,851 + -0.4 875,851 + +1.9 875,859 - -1.0 875,861 + -1.6 875,861 + -1.1 875,861 + -1.0 875,861 + +0.5 875,896 + PGA1_c08470 0.14 -2.5 875,904 + PGA1_c08470 0.15 -0.1 875,909 + PGA1_c08470 0.15 -0.2 875,909 + PGA1_c08470 0.15 -1.0 875,912 - PGA1_c08470 0.16 -0.7 875,917 - PGA1_c08470 0.16 +0.0 875,932 + PGA1_c08470 0.18 +0.4 875,946 + PGA1_c08470 0.19 +0.1 875,996 + PGA1_c08470 0.25 -0.7 876,006 + PGA1_c08470 0.26 +0.6 876,006 + PGA1_c08470 0.26 -0.7 876,006 + PGA1_c08470 0.26 -0.5 876,006 + PGA1_c08470 0.26 -0.8 876,006 + PGA1_c08470 0.26 +2.2 876,014 - PGA1_c08470 0.27 -0.1 876,014 - PGA1_c08470 0.27 -0.1 876,014 - PGA1_c08470 0.27 -0.8 876,014 - PGA1_c08470 0.27 -0.7 876,014 - PGA1_c08470 0.27 -0.6 876,120 - PGA1_c08470 0.39 +1.5 876,130 - PGA1_c08470 0.40 +0.9 876,149 - PGA1_c08470 0.42 -0.6 876,189 - PGA1_c08470 0.46 -2.0 876,199 - PGA1_c08470 0.47 +0.2 876,199 - PGA1_c08470 0.47 -1.3 876,206 + PGA1_c08470 0.48 +1.0 876,208 + PGA1_c08470 0.48 +1.3 876,228 + PGA1_c08470 0.50 +0.5 876,249 + PGA1_c08470 0.53 +0.1 876,301 - PGA1_c08470 0.59 +0.1 876,349 + PGA1_c08470 0.64 -0.4 876,357 - PGA1_c08470 0.65 -1.1 876,386 + PGA1_c08470 0.68 -0.5 876,403 - PGA1_c08470 0.70 -2.0 876,423 - PGA1_c08470 0.72 +0.0 876,434 + PGA1_c08470 0.73 -2.3 876,463 + PGA1_c08470 0.77 +0.6 876,471 - PGA1_c08470 0.77 +1.3 876,540 + PGA1_c08470 0.85 -3.1 876,549 - PGA1_c08470 0.86 -0.6 876,704 - +0.6 876,724 + +0.4
Or see this region's nucleotide sequence