Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c08420 and PGA1_c08430 overlap by 4 nucleotides PGA1_c08430 and PGA1_c08440 are separated by 32 nucleotides PGA1_c08440 and PGA1_c08450 are separated by 109 nucleotides PGA1_c08450 and PGA1_c08460 overlap by 8 nucleotides
PGA1_c08420: PGA1_c08420 - putative 3-hydroxyacyl-CoA dehydrogenase, at 871,363 to 872,838
_c08420
PGA1_c08430: PGA1_c08430 - short chain dehydrogenase / reductase, at 872,835 to 873,608
_c08430
PGA1_c08440: PGA1_c08440 - Helix-turn-helix., at 873,641 to 874,501
_c08440
PGA1_c08450: PGA1_c08450 - Predicted membrane protein (DUF2061)., at 874,611 to 874,817
_c08450
PGA1_c08460: PGA1_c08460 - putative fatty acid desaturase, at 874,810 to 875,754
_c08460
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 872.726 kb on + strand at 872.776 kb on - strand at 872.814 kb on - strand at 872.829 kb on + strand at 872.834 kb on + strand at 872.839 kb on + strand at 872.847 kb on + strand at 872.855 kb on - strand at 872.859 kb on + strand at 872.872 kb on - strand at 872.878 kb on + strand at 872.986 kb on + strand, within PGA1_c08430 at 873.045 kb on + strand, within PGA1_c08430 at 873.046 kb on + strand, within PGA1_c08430 at 873.046 kb on + strand, within PGA1_c08430 at 873.066 kb on + strand, within PGA1_c08430 at 873.076 kb on + strand, within PGA1_c08430 at 873.110 kb on + strand, within PGA1_c08430 at 873.110 kb on + strand, within PGA1_c08430 at 873.127 kb on - strand, within PGA1_c08430 at 873.203 kb on - strand, within PGA1_c08430 at 873.215 kb on + strand, within PGA1_c08430 at 873.284 kb on - strand, within PGA1_c08430 at 873.317 kb on + strand, within PGA1_c08430 at 873.319 kb on - strand, within PGA1_c08430 at 873.319 kb on - strand, within PGA1_c08430 at 873.357 kb on + strand, within PGA1_c08430 at 873.365 kb on - strand, within PGA1_c08430 at 873.370 kb on - strand, within PGA1_c08430 at 873.375 kb on - strand, within PGA1_c08430 at 873.394 kb on + strand, within PGA1_c08430 at 873.400 kb on - strand, within PGA1_c08430 at 873.410 kb on + strand, within PGA1_c08430 at 873.410 kb on + strand, within PGA1_c08430 at 873.415 kb on + strand, within PGA1_c08430 at 873.418 kb on - strand, within PGA1_c08430 at 873.446 kb on + strand, within PGA1_c08430 at 873.455 kb on + strand, within PGA1_c08430 at 873.457 kb on - strand, within PGA1_c08430 at 873.463 kb on - strand, within PGA1_c08430 at 873.463 kb on - strand, within PGA1_c08430 at 873.577 kb on + strand at 873.585 kb on - strand at 873.607 kb on + strand at 873.674 kb on + strand at 873.674 kb on + strand at 873.703 kb on - strand at 873.815 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.828 kb on + strand, within PGA1_c08440 at 873.831 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.836 kb on - strand, within PGA1_c08440 at 873.843 kb on + strand, within PGA1_c08440 at 873.882 kb on + strand, within PGA1_c08440 at 873.882 kb on + strand, within PGA1_c08440 at 873.890 kb on - strand, within PGA1_c08440 at 873.890 kb on - strand, within PGA1_c08440 at 873.890 kb on - strand, within PGA1_c08440 at 873.900 kb on - strand, within PGA1_c08440 at 873.958 kb on + strand, within PGA1_c08440 at 873.958 kb on + strand, within PGA1_c08440 at 873.966 kb on - strand, within PGA1_c08440 at 874.057 kb on + strand, within PGA1_c08440 at 874.078 kb on - strand, within PGA1_c08440 at 874.297 kb on + strand, within PGA1_c08440 at 874.398 kb on + strand, within PGA1_c08440 at 874.430 kb on + strand at 874.445 kb on + strand at 874.451 kb on - strand at 874.453 kb on - strand at 874.453 kb on - strand at 874.472 kb on + strand at 874.570 kb on + strand at 874.570 kb on + strand at 874.578 kb on - strand at 874.578 kb on - strand at 874.578 kb on - strand at 874.578 kb on - strand at 874.578 kb on - strand at 874.722 kb on + strand, within PGA1_c08450 at 874.778 kb on + strand, within PGA1_c08450 at 874.783 kb on + strand, within PGA1_c08450 at 875.012 kb on + strand, within PGA1_c08460 at 875.012 kb on + strand, within PGA1_c08460 at 875.020 kb on - strand, within PGA1_c08460 at 875.020 kb on - strand, within PGA1_c08460 at 875.020 kb on - strand, within PGA1_c08460 at 875.156 kb on + strand, within PGA1_c08460 at 875.156 kb on + strand, within PGA1_c08460 at 875.162 kb on - strand, within PGA1_c08460 at 875.162 kb on - strand, within PGA1_c08460 at 875.214 kb on + strand, within PGA1_c08460 at 875.214 kb on + strand, within PGA1_c08460 at 875.270 kb on + strand, within PGA1_c08460 at 875.270 kb on + strand, within PGA1_c08460 at 875.270 kb on + strand, within PGA1_c08460 at 875.270 kb on + strand, within PGA1_c08460 at 875.273 kb on - strand, within PGA1_c08460 at 875.278 kb on - strand, within PGA1_c08460 at 875.278 kb on - strand, within PGA1_c08460 at 875.281 kb on + strand, within PGA1_c08460 at 875.283 kb on - strand, within PGA1_c08460 at 875.299 kb on + strand, within PGA1_c08460 at 875.420 kb on - strand, within PGA1_c08460 at 875.438 kb on + strand, within PGA1_c08460
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 872,726 + +1.3 872,776 - -0.2 872,814 - -0.6 872,829 + +1.1 872,834 + -0.2 872,839 + -2.1 872,847 + -1.0 872,855 - +1.2 872,859 + -1.5 872,872 - +0.5 872,878 + +0.7 872,986 + PGA1_c08430 0.20 -0.4 873,045 + PGA1_c08430 0.27 -0.2 873,046 + PGA1_c08430 0.27 -1.6 873,046 + PGA1_c08430 0.27 -0.2 873,066 + PGA1_c08430 0.30 +1.2 873,076 + PGA1_c08430 0.31 +0.2 873,110 + PGA1_c08430 0.36 -1.5 873,110 + PGA1_c08430 0.36 -1.2 873,127 - PGA1_c08430 0.38 -1.0 873,203 - PGA1_c08430 0.48 +0.8 873,215 + PGA1_c08430 0.49 +1.3 873,284 - PGA1_c08430 0.58 -0.2 873,317 + PGA1_c08430 0.62 +2.1 873,319 - PGA1_c08430 0.63 +0.8 873,319 - PGA1_c08430 0.63 +0.1 873,357 + PGA1_c08430 0.67 -1.2 873,365 - PGA1_c08430 0.68 -0.2 873,370 - PGA1_c08430 0.69 -1.7 873,375 - PGA1_c08430 0.70 -3.4 873,394 + PGA1_c08430 0.72 -1.2 873,400 - PGA1_c08430 0.73 -1.2 873,410 + PGA1_c08430 0.74 -1.5 873,410 + PGA1_c08430 0.74 -2.7 873,415 + PGA1_c08430 0.75 -0.3 873,418 - PGA1_c08430 0.75 +0.8 873,446 + PGA1_c08430 0.79 -0.1 873,455 + PGA1_c08430 0.80 +0.3 873,457 - PGA1_c08430 0.80 -1.0 873,463 - PGA1_c08430 0.81 +0.1 873,463 - PGA1_c08430 0.81 -0.4 873,577 + -0.5 873,585 - -0.2 873,607 + +0.6 873,674 + +0.3 873,674 + +1.1 873,703 - -1.7 873,815 + PGA1_c08440 0.20 -0.2 873,828 + PGA1_c08440 0.22 -0.5 873,828 + PGA1_c08440 0.22 +0.8 873,828 + PGA1_c08440 0.22 +0.3 873,828 + PGA1_c08440 0.22 -0.8 873,828 + PGA1_c08440 0.22 +0.5 873,828 + PGA1_c08440 0.22 +1.3 873,828 + PGA1_c08440 0.22 +1.2 873,831 - PGA1_c08440 0.22 -0.6 873,836 - PGA1_c08440 0.23 -0.0 873,836 - PGA1_c08440 0.23 +0.2 873,836 - PGA1_c08440 0.23 -2.3 873,836 - PGA1_c08440 0.23 -2.6 873,836 - PGA1_c08440 0.23 +0.5 873,843 + PGA1_c08440 0.23 -1.7 873,882 + PGA1_c08440 0.28 +0.2 873,882 + PGA1_c08440 0.28 +0.0 873,890 - PGA1_c08440 0.29 +2.1 873,890 - PGA1_c08440 0.29 -0.8 873,890 - PGA1_c08440 0.29 -0.5 873,900 - PGA1_c08440 0.30 -0.3 873,958 + PGA1_c08440 0.37 -1.9 873,958 + PGA1_c08440 0.37 -0.9 873,966 - PGA1_c08440 0.38 -0.2 874,057 + PGA1_c08440 0.48 -1.5 874,078 - PGA1_c08440 0.51 -0.5 874,297 + PGA1_c08440 0.76 -0.7 874,398 + PGA1_c08440 0.88 +1.5 874,430 + -0.2 874,445 + -1.3 874,451 - +0.5 874,453 - -1.7 874,453 - +1.6 874,472 + +1.2 874,570 + -1.2 874,570 + -3.2 874,578 - -0.3 874,578 - -0.2 874,578 - +1.2 874,578 - -1.6 874,578 - -0.4 874,722 + PGA1_c08450 0.54 +0.4 874,778 + PGA1_c08450 0.81 +0.5 874,783 + PGA1_c08450 0.83 -0.7 875,012 + PGA1_c08460 0.21 -0.4 875,012 + PGA1_c08460 0.21 -0.2 875,020 - PGA1_c08460 0.22 -0.2 875,020 - PGA1_c08460 0.22 -1.8 875,020 - PGA1_c08460 0.22 -1.5 875,156 + PGA1_c08460 0.37 -0.8 875,156 + PGA1_c08460 0.37 -1.7 875,162 - PGA1_c08460 0.37 -1.5 875,162 - PGA1_c08460 0.37 +0.6 875,214 + PGA1_c08460 0.43 -1.1 875,214 + PGA1_c08460 0.43 +0.4 875,270 + PGA1_c08460 0.49 -2.2 875,270 + PGA1_c08460 0.49 +0.8 875,270 + PGA1_c08460 0.49 -0.7 875,270 + PGA1_c08460 0.49 -0.4 875,273 - PGA1_c08460 0.49 -1.4 875,278 - PGA1_c08460 0.50 +0.3 875,278 - PGA1_c08460 0.50 -1.3 875,281 + PGA1_c08460 0.50 -0.4 875,283 - PGA1_c08460 0.50 +1.2 875,299 + PGA1_c08460 0.52 -0.3 875,420 - PGA1_c08460 0.65 +0.7 875,438 + PGA1_c08460 0.66 +0.7
Or see this region's nucleotide sequence