Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07630

Experiment: m.b. Vancomycin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07620 and PGA1_c07630 are separated by 169 nucleotidesPGA1_c07630 and PGA1_c07640 are separated by 67 nucleotides PGA1_c07620: PGA1_c07620 - Type IV pilus biogenesis., at 787,888 to 790,587 _c07620 PGA1_c07630: PGA1_c07630 - Uncharacterized conserved protein, at 790,757 to 791,473 _c07630 PGA1_c07640: PGA1_c07640 - O-acetylhomoserine / O-acetylserine sulfhydrylase, at 791,541 to 792,833 _c07640 Position (kb) 790 791 792Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 789.774 kb on - strand, within PGA1_c07620at 789.815 kb on + strand, within PGA1_c07620at 789.823 kb on - strand, within PGA1_c07620at 789.833 kb on + strand, within PGA1_c07620at 789.841 kb on - strand, within PGA1_c07620at 789.854 kb on + strand, within PGA1_c07620at 789.877 kb on + strand, within PGA1_c07620at 789.885 kb on - strand, within PGA1_c07620at 789.885 kb on - strand, within PGA1_c07620at 789.919 kb on - strand, within PGA1_c07620at 789.922 kb on + strand, within PGA1_c07620at 790.065 kb on + strand, within PGA1_c07620at 790.065 kb on + strand, within PGA1_c07620at 790.065 kb on + strand, within PGA1_c07620at 790.104 kb on + strand, within PGA1_c07620at 790.108 kb on - strand, within PGA1_c07620at 790.119 kb on - strand, within PGA1_c07620at 790.190 kb on - strand, within PGA1_c07620at 790.324 kb on - strandat 790.542 kb on + strandat 790.569 kb on + strandat 790.606 kb on + strandat 790.614 kb on - strandat 790.616 kb on + strandat 790.624 kb on - strandat 790.624 kb on - strandat 790.654 kb on + strandat 790.654 kb on + strandat 790.654 kb on + strandat 790.654 kb on + strandat 790.654 kb on + strandat 790.662 kb on - strandat 790.662 kb on - strandat 790.662 kb on - strandat 790.662 kb on - strandat 790.662 kb on - strandat 790.803 kb on + strandat 790.808 kb on + strandat 790.808 kb on + strandat 790.910 kb on - strand, within PGA1_c07630at 790.910 kb on - strand, within PGA1_c07630at 790.939 kb on + strand, within PGA1_c07630at 790.992 kb on + strand, within PGA1_c07630at 791.038 kb on + strand, within PGA1_c07630at 791.067 kb on + strand, within PGA1_c07630at 791.111 kb on + strand, within PGA1_c07630at 791.112 kb on + strand, within PGA1_c07630at 791.242 kb on - strand, within PGA1_c07630at 791.247 kb on - strand, within PGA1_c07630at 791.301 kb on + strand, within PGA1_c07630at 791.309 kb on - strand, within PGA1_c07630at 791.359 kb on + strand, within PGA1_c07630at 791.366 kb on + strand, within PGA1_c07630at 791.372 kb on + strand, within PGA1_c07630at 791.507 kb on + strandat 791.514 kb on + strandat 791.644 kb on + strandat 791.654 kb on + strandat 791.659 kb on + strandat 791.659 kb on + strandat 791.662 kb on - strandat 791.667 kb on - strandat 791.693 kb on + strand, within PGA1_c07640at 791.722 kb on - strand, within PGA1_c07640at 791.749 kb on + strand, within PGA1_c07640at 791.759 kb on + strand, within PGA1_c07640at 791.779 kb on - strand, within PGA1_c07640at 791.816 kb on + strand, within PGA1_c07640at 791.816 kb on + strand, within PGA1_c07640at 791.841 kb on + strand, within PGA1_c07640at 791.864 kb on + strand, within PGA1_c07640at 791.867 kb on - strand, within PGA1_c07640at 791.867 kb on - strand, within PGA1_c07640at 791.867 kb on - strand, within PGA1_c07640at 791.867 kb on - strand, within PGA1_c07640at 791.872 kb on - strand, within PGA1_c07640at 791.877 kb on - strand, within PGA1_c07640at 791.962 kb on - strand, within PGA1_c07640at 791.963 kb on - strand, within PGA1_c07640at 791.992 kb on + strand, within PGA1_c07640at 791.992 kb on + strand, within PGA1_c07640at 792.000 kb on - strand, within PGA1_c07640at 792.000 kb on - strand, within PGA1_c07640at 792.026 kb on + strand, within PGA1_c07640at 792.041 kb on + strand, within PGA1_c07640at 792.049 kb on + strand, within PGA1_c07640at 792.086 kb on + strand, within PGA1_c07640at 792.094 kb on - strand, within PGA1_c07640at 792.100 kb on + strand, within PGA1_c07640at 792.106 kb on + strand, within PGA1_c07640at 792.106 kb on + strand, within PGA1_c07640at 792.106 kb on + strand, within PGA1_c07640at 792.106 kb on + strand, within PGA1_c07640at 792.106 kb on + strand, within PGA1_c07640at 792.106 kb on + strand, within PGA1_c07640at 792.106 kb on + strand, within PGA1_c07640at 792.114 kb on - strand, within PGA1_c07640at 792.227 kb on + strand, within PGA1_c07640at 792.261 kb on + strand, within PGA1_c07640at 792.265 kb on - strand, within PGA1_c07640at 792.346 kb on + strand, within PGA1_c07640at 792.346 kb on + strand, within PGA1_c07640at 792.374 kb on + strand, within PGA1_c07640at 792.412 kb on + strand, within PGA1_c07640at 792.412 kb on + strand, within PGA1_c07640at 792.413 kb on + strand, within PGA1_c07640at 792.420 kb on - strand, within PGA1_c07640at 792.420 kb on - strand, within PGA1_c07640at 792.420 kb on - strand, within PGA1_c07640at 792.420 kb on - strand, within PGA1_c07640at 792.420 kb on - strand, within PGA1_c07640at 792.420 kb on - strand, within PGA1_c07640at 792.421 kb on - strand, within PGA1_c07640

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml
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789,774 - PGA1_c07620 0.70 -0.7
789,815 + PGA1_c07620 0.71 -0.7
789,823 - PGA1_c07620 0.72 -3.3
789,833 + PGA1_c07620 0.72 -0.4
789,841 - PGA1_c07620 0.72 -1.2
789,854 + PGA1_c07620 0.73 -1.1
789,877 + PGA1_c07620 0.74 -1.1
789,885 - PGA1_c07620 0.74 +0.3
789,885 - PGA1_c07620 0.74 -2.3
789,919 - PGA1_c07620 0.75 -3.1
789,922 + PGA1_c07620 0.75 -1.6
790,065 + PGA1_c07620 0.81 -2.6
790,065 + PGA1_c07620 0.81 -1.9
790,065 + PGA1_c07620 0.81 +0.6
790,104 + PGA1_c07620 0.82 -2.4
790,108 - PGA1_c07620 0.82 -1.5
790,119 - PGA1_c07620 0.83 -2.8
790,190 - PGA1_c07620 0.85 +1.4
790,324 - -0.5
790,542 + -2.6
790,569 + -1.6
790,606 + -1.5
790,614 - -0.3
790,616 + +0.4
790,624 - -0.8
790,624 - +1.7
790,654 + +1.2
790,654 + -1.1
790,654 + +0.9
790,654 + -0.9
790,654 + -0.1
790,662 - -0.1
790,662 - -1.0
790,662 - -1.0
790,662 - +0.9
790,662 - -0.6
790,803 + +0.8
790,808 + +0.9
790,808 + +0.0
790,910 - PGA1_c07630 0.21 -0.1
790,910 - PGA1_c07630 0.21 +0.5
790,939 + PGA1_c07630 0.25 -0.3
790,992 + PGA1_c07630 0.33 +1.6
791,038 + PGA1_c07630 0.39 -1.3
791,067 + PGA1_c07630 0.43 +0.1
791,111 + PGA1_c07630 0.49 +0.0
791,112 + PGA1_c07630 0.50 +0.8
791,242 - PGA1_c07630 0.68 +0.1
791,247 - PGA1_c07630 0.68 +0.2
791,301 + PGA1_c07630 0.76 +2.5
791,309 - PGA1_c07630 0.77 +0.6
791,359 + PGA1_c07630 0.84 +0.1
791,366 + PGA1_c07630 0.85 +0.5
791,372 + PGA1_c07630 0.86 +0.8
791,507 + -0.8
791,514 + -0.5
791,644 + -0.6
791,654 + +0.6
791,659 + +0.5
791,659 + -0.1
791,662 - +0.4
791,667 - -1.2
791,693 + PGA1_c07640 0.12 -3.4
791,722 - PGA1_c07640 0.14 +1.3
791,749 + PGA1_c07640 0.16 +0.2
791,759 + PGA1_c07640 0.17 +0.1
791,779 - PGA1_c07640 0.18 -0.5
791,816 + PGA1_c07640 0.21 -0.9
791,816 + PGA1_c07640 0.21 -0.4
791,841 + PGA1_c07640 0.23 +0.1
791,864 + PGA1_c07640 0.25 +0.9
791,867 - PGA1_c07640 0.25 -2.7
791,867 - PGA1_c07640 0.25 -0.3
791,867 - PGA1_c07640 0.25 +0.3
791,867 - PGA1_c07640 0.25 +0.7
791,872 - PGA1_c07640 0.26 +1.3
791,877 - PGA1_c07640 0.26 +1.6
791,962 - PGA1_c07640 0.33 +0.7
791,963 - PGA1_c07640 0.33 -0.4
791,992 + PGA1_c07640 0.35 +0.3
791,992 + PGA1_c07640 0.35 +1.2
792,000 - PGA1_c07640 0.35 +0.1
792,000 - PGA1_c07640 0.35 +0.4
792,026 + PGA1_c07640 0.38 +0.9
792,041 + PGA1_c07640 0.39 +0.3
792,049 + PGA1_c07640 0.39 +0.5
792,086 + PGA1_c07640 0.42 -0.5
792,094 - PGA1_c07640 0.43 -0.9
792,100 + PGA1_c07640 0.43 -0.1
792,106 + PGA1_c07640 0.44 -1.5
792,106 + PGA1_c07640 0.44 -0.1
792,106 + PGA1_c07640 0.44 +0.0
792,106 + PGA1_c07640 0.44 -0.0
792,106 + PGA1_c07640 0.44 +0.5
792,106 + PGA1_c07640 0.44 +0.8
792,106 + PGA1_c07640 0.44 +0.4
792,114 - PGA1_c07640 0.44 +1.8
792,227 + PGA1_c07640 0.53 -1.5
792,261 + PGA1_c07640 0.56 -0.4
792,265 - PGA1_c07640 0.56 -1.1
792,346 + PGA1_c07640 0.62 -2.0
792,346 + PGA1_c07640 0.62 +0.0
792,374 + PGA1_c07640 0.64 +0.3
792,412 + PGA1_c07640 0.67 -2.3
792,412 + PGA1_c07640 0.67 +3.0
792,413 + PGA1_c07640 0.67 +0.2
792,420 - PGA1_c07640 0.68 -1.2
792,420 - PGA1_c07640 0.68 +0.9
792,420 - PGA1_c07640 0.68 +1.5
792,420 - PGA1_c07640 0.68 +0.4
792,420 - PGA1_c07640 0.68 +0.7
792,420 - PGA1_c07640 0.68 +1.0
792,421 - PGA1_c07640 0.68 +0.4

Or see this region's nucleotide sequence