Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c07160 and PGA1_c07170 are separated by 23 nucleotides PGA1_c07170 and PGA1_c07180 are separated by 144 nucleotides PGA1_c07180 and PGA1_c07190 are separated by 226 nucleotides
PGA1_c07160: PGA1_c07160 - FOG: WD40 repeat, at 735,792 to 737,102
_c07160
PGA1_c07170: PGA1_c07170 - acetate operon repressor-like protein, at 737,126 to 737,938
_c07170
PGA1_c07180: PGA1_c07180 - 2-hydroxy-3-oxopropionate reductase-like protein, at 738,083 to 739,048
_c07180
PGA1_c07190: PGA1_c07190 - transcriptional regulator, IclR family, at 739,275 to 740,348
_c07190
Position (kb) 738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 737.097 kb on + strand at 737.142 kb on + strand at 737.142 kb on + strand at 737.150 kb on - strand at 737.282 kb on - strand, within PGA1_c07170 at 737.283 kb on - strand, within PGA1_c07170 at 737.327 kb on - strand, within PGA1_c07170 at 737.385 kb on - strand, within PGA1_c07170 at 737.398 kb on - strand, within PGA1_c07170 at 737.404 kb on - strand, within PGA1_c07170 at 737.430 kb on + strand, within PGA1_c07170 at 737.445 kb on + strand, within PGA1_c07170 at 737.445 kb on + strand, within PGA1_c07170 at 737.508 kb on - strand, within PGA1_c07170 at 737.543 kb on + strand, within PGA1_c07170 at 737.543 kb on + strand, within PGA1_c07170 at 737.551 kb on - strand, within PGA1_c07170 at 737.551 kb on - strand, within PGA1_c07170 at 737.551 kb on - strand, within PGA1_c07170 at 737.560 kb on + strand, within PGA1_c07170 at 737.560 kb on + strand, within PGA1_c07170 at 737.560 kb on + strand, within PGA1_c07170 at 737.560 kb on + strand, within PGA1_c07170 at 737.568 kb on - strand, within PGA1_c07170 at 737.568 kb on - strand, within PGA1_c07170 at 737.568 kb on - strand, within PGA1_c07170 at 737.574 kb on - strand, within PGA1_c07170 at 737.574 kb on - strand, within PGA1_c07170 at 737.576 kb on + strand, within PGA1_c07170 at 737.576 kb on + strand, within PGA1_c07170 at 737.584 kb on - strand, within PGA1_c07170 at 737.598 kb on + strand, within PGA1_c07170 at 737.598 kb on + strand, within PGA1_c07170 at 737.668 kb on + strand, within PGA1_c07170 at 737.671 kb on - strand, within PGA1_c07170 at 737.701 kb on - strand, within PGA1_c07170 at 737.701 kb on - strand, within PGA1_c07170 at 737.787 kb on + strand, within PGA1_c07170 at 737.810 kb on + strand, within PGA1_c07170 at 737.815 kb on + strand, within PGA1_c07170 at 737.823 kb on - strand, within PGA1_c07170 at 737.848 kb on + strand, within PGA1_c07170 at 737.866 kb on - strand at 737.898 kb on - strand at 738.004 kb on - strand at 738.007 kb on + strand at 738.012 kb on + strand at 738.012 kb on + strand at 738.012 kb on + strand at 738.012 kb on + strand at 738.012 kb on + strand at 738.020 kb on - strand at 738.020 kb on - strand at 738.041 kb on + strand at 738.041 kb on + strand at 738.055 kb on + strand at 738.063 kb on - strand at 738.088 kb on + strand at 738.136 kb on + strand at 738.145 kb on + strand at 738.185 kb on + strand, within PGA1_c07180 at 738.240 kb on - strand, within PGA1_c07180 at 738.240 kb on - strand, within PGA1_c07180 at 738.240 kb on - strand, within PGA1_c07180 at 738.324 kb on + strand, within PGA1_c07180 at 738.324 kb on + strand, within PGA1_c07180 at 738.324 kb on + strand, within PGA1_c07180 at 738.324 kb on + strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.332 kb on - strand, within PGA1_c07180 at 738.334 kb on + strand, within PGA1_c07180 at 738.336 kb on + strand, within PGA1_c07180 at 738.355 kb on + strand, within PGA1_c07180 at 738.363 kb on + strand, within PGA1_c07180 at 738.437 kb on + strand, within PGA1_c07180 at 738.466 kb on + strand, within PGA1_c07180 at 738.469 kb on - strand, within PGA1_c07180 at 738.491 kb on + strand, within PGA1_c07180 at 738.491 kb on + strand, within PGA1_c07180 at 738.509 kb on + strand, within PGA1_c07180 at 738.517 kb on - strand, within PGA1_c07180 at 738.517 kb on - strand, within PGA1_c07180 at 738.559 kb on + strand, within PGA1_c07180 at 738.567 kb on - strand, within PGA1_c07180 at 738.594 kb on - strand, within PGA1_c07180 at 738.632 kb on + strand, within PGA1_c07180 at 738.633 kb on - strand, within PGA1_c07180 at 738.633 kb on - strand, within PGA1_c07180 at 738.656 kb on + strand, within PGA1_c07180 at 738.690 kb on + strand, within PGA1_c07180 at 738.707 kb on + strand, within PGA1_c07180 at 738.715 kb on - strand, within PGA1_c07180 at 738.750 kb on + strand, within PGA1_c07180 at 738.766 kb on + strand, within PGA1_c07180 at 738.786 kb on + strand, within PGA1_c07180 at 738.794 kb on - strand, within PGA1_c07180 at 738.856 kb on + strand, within PGA1_c07180 at 738.861 kb on + strand, within PGA1_c07180 at 738.861 kb on + strand, within PGA1_c07180 at 738.863 kb on + strand, within PGA1_c07180 at 738.928 kb on + strand, within PGA1_c07180 at 738.976 kb on - strand at 738.981 kb on - strand at 738.994 kb on + strand at 738.994 kb on + strand at 739.002 kb on - strand at 739.025 kb on - strand at 739.151 kb on + strand at 739.156 kb on + strand at 739.159 kb on - strand at 739.159 kb on - strand at 739.159 kb on - strand at 739.159 kb on - strand at 739.159 kb on - strand at 739.161 kb on + strand at 739.161 kb on + strand at 739.188 kb on + strand at 739.199 kb on + strand at 739.209 kb on + strand at 739.248 kb on + strand at 739.261 kb on - strand at 739.290 kb on + strand at 739.290 kb on + strand at 739.290 kb on + strand at 739.290 kb on + strand at 739.290 kb on + strand at 739.296 kb on + strand at 739.298 kb on - strand at 739.298 kb on - strand at 739.298 kb on - strand at 739.298 kb on - strand at 739.304 kb on - strand at 739.339 kb on + strand at 739.357 kb on + strand at 739.365 kb on - strand at 739.365 kb on - strand at 739.376 kb on + strand at 739.378 kb on + strand at 739.389 kb on + strand, within PGA1_c07190 at 739.444 kb on + strand, within PGA1_c07190 at 739.452 kb on - strand, within PGA1_c07190 at 739.466 kb on - strand, within PGA1_c07190 at 739.487 kb on - strand, within PGA1_c07190 at 739.493 kb on + strand, within PGA1_c07190 at 739.501 kb on + strand, within PGA1_c07190 at 739.501 kb on + strand, within PGA1_c07190 at 739.501 kb on + strand, within PGA1_c07190 at 739.501 kb on + strand, within PGA1_c07190 at 739.501 kb on - strand, within PGA1_c07190 at 739.509 kb on - strand, within PGA1_c07190 at 739.509 kb on - strand, within PGA1_c07190 at 739.509 kb on - strand, within PGA1_c07190 at 739.509 kb on - strand, within PGA1_c07190 at 739.511 kb on - strand, within PGA1_c07190 at 739.526 kb on + strand, within PGA1_c07190 at 739.569 kb on + strand, within PGA1_c07190 at 739.577 kb on - strand, within PGA1_c07190 at 739.590 kb on - strand, within PGA1_c07190 at 739.605 kb on + strand, within PGA1_c07190 at 739.613 kb on - strand, within PGA1_c07190 at 739.613 kb on - strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.695 kb on + strand, within PGA1_c07190 at 739.703 kb on - strand, within PGA1_c07190 at 739.752 kb on + strand, within PGA1_c07190 at 739.912 kb on + strand, within PGA1_c07190 at 739.941 kb on + strand, within PGA1_c07190 at 739.943 kb on + strand, within PGA1_c07190 at 739.945 kb on - strand, within PGA1_c07190 at 739.957 kb on - strand, within PGA1_c07190 at 739.985 kb on + strand, within PGA1_c07190 at 739.985 kb on + strand, within PGA1_c07190 at 739.985 kb on + strand, within PGA1_c07190 at 739.993 kb on - strand, within PGA1_c07190 at 740.045 kb on - strand, within PGA1_c07190 at 740.048 kb on + strand, within PGA1_c07190
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 737,097 + -1.7 737,142 + -0.3 737,142 + -1.3 737,150 - +1.3 737,282 - PGA1_c07170 0.19 -3.0 737,283 - PGA1_c07170 0.19 -0.0 737,327 - PGA1_c07170 0.25 -2.9 737,385 - PGA1_c07170 0.32 -0.1 737,398 - PGA1_c07170 0.33 -2.3 737,404 - PGA1_c07170 0.34 -0.1 737,430 + PGA1_c07170 0.37 -0.2 737,445 + PGA1_c07170 0.39 +0.1 737,445 + PGA1_c07170 0.39 +0.7 737,508 - PGA1_c07170 0.47 -0.9 737,543 + PGA1_c07170 0.51 -0.4 737,543 + PGA1_c07170 0.51 +0.4 737,551 - PGA1_c07170 0.52 -0.1 737,551 - PGA1_c07170 0.52 +0.3 737,551 - PGA1_c07170 0.52 -0.3 737,560 + PGA1_c07170 0.53 -0.7 737,560 + PGA1_c07170 0.53 -0.1 737,560 + PGA1_c07170 0.53 +0.0 737,560 + PGA1_c07170 0.53 -0.4 737,568 - PGA1_c07170 0.54 -0.5 737,568 - PGA1_c07170 0.54 -0.4 737,568 - PGA1_c07170 0.54 +1.3 737,574 - PGA1_c07170 0.55 -2.8 737,574 - PGA1_c07170 0.55 -0.9 737,576 + PGA1_c07170 0.55 -2.1 737,576 + PGA1_c07170 0.55 +0.6 737,584 - PGA1_c07170 0.56 +0.6 737,598 + PGA1_c07170 0.58 -2.5 737,598 + PGA1_c07170 0.58 -0.1 737,668 + PGA1_c07170 0.67 +1.6 737,671 - PGA1_c07170 0.67 +0.3 737,701 - PGA1_c07170 0.71 -1.0 737,701 - PGA1_c07170 0.71 -0.8 737,787 + PGA1_c07170 0.81 -0.8 737,810 + PGA1_c07170 0.84 +1.1 737,815 + PGA1_c07170 0.85 -0.0 737,823 - PGA1_c07170 0.86 -0.4 737,848 + PGA1_c07170 0.89 +0.7 737,866 - +0.9 737,898 - +1.4 738,004 - +2.4 738,007 + +0.1 738,012 + -1.0 738,012 + +1.0 738,012 + +0.6 738,012 + -0.1 738,012 + -0.0 738,020 - -0.7 738,020 - +0.3 738,041 + -1.4 738,041 + +1.3 738,055 + +0.0 738,063 - -0.0 738,088 + -0.3 738,136 + -0.3 738,145 + +0.0 738,185 + PGA1_c07180 0.11 +0.1 738,240 - PGA1_c07180 0.16 -0.4 738,240 - PGA1_c07180 0.16 +0.1 738,240 - PGA1_c07180 0.16 -0.3 738,324 + PGA1_c07180 0.25 -2.1 738,324 + PGA1_c07180 0.25 -2.6 738,324 + PGA1_c07180 0.25 +0.2 738,324 + PGA1_c07180 0.25 +1.4 738,332 - PGA1_c07180 0.26 -1.9 738,332 - PGA1_c07180 0.26 -0.8 738,332 - PGA1_c07180 0.26 -0.9 738,332 - PGA1_c07180 0.26 +0.2 738,332 - PGA1_c07180 0.26 +0.3 738,332 - PGA1_c07180 0.26 -0.8 738,332 - PGA1_c07180 0.26 -0.1 738,332 - PGA1_c07180 0.26 -0.4 738,334 + PGA1_c07180 0.26 -0.5 738,336 + PGA1_c07180 0.26 +0.7 738,355 + PGA1_c07180 0.28 +0.0 738,363 + PGA1_c07180 0.29 -0.1 738,437 + PGA1_c07180 0.37 -1.8 738,466 + PGA1_c07180 0.40 -0.3 738,469 - PGA1_c07180 0.40 -1.3 738,491 + PGA1_c07180 0.42 -0.4 738,491 + PGA1_c07180 0.42 -0.0 738,509 + PGA1_c07180 0.44 +0.1 738,517 - PGA1_c07180 0.45 +0.5 738,517 - PGA1_c07180 0.45 -1.2 738,559 + PGA1_c07180 0.49 -1.7 738,567 - PGA1_c07180 0.50 -0.7 738,594 - PGA1_c07180 0.53 -0.4 738,632 + PGA1_c07180 0.57 -0.3 738,633 - PGA1_c07180 0.57 +0.9 738,633 - PGA1_c07180 0.57 -0.1 738,656 + PGA1_c07180 0.59 +0.5 738,690 + PGA1_c07180 0.63 -0.3 738,707 + PGA1_c07180 0.65 +0.8 738,715 - PGA1_c07180 0.65 +0.4 738,750 + PGA1_c07180 0.69 -2.3 738,766 + PGA1_c07180 0.71 +0.5 738,786 + PGA1_c07180 0.73 -0.3 738,794 - PGA1_c07180 0.74 -0.2 738,856 + PGA1_c07180 0.80 -1.0 738,861 + PGA1_c07180 0.81 +0.9 738,861 + PGA1_c07180 0.81 -2.5 738,863 + PGA1_c07180 0.81 -0.4 738,928 + PGA1_c07180 0.87 -1.6 738,976 - +2.7 738,981 - +1.7 738,994 + -0.1 738,994 + -0.9 739,002 - +0.1 739,025 - -1.1 739,151 + +0.8 739,156 + +0.2 739,159 - -2.4 739,159 - +0.4 739,159 - -1.4 739,159 - +1.2 739,159 - +0.1 739,161 + +0.1 739,161 + -1.3 739,188 + -1.0 739,199 + -0.9 739,209 + +0.4 739,248 + +0.5 739,261 - +1.7 739,290 + +1.4 739,290 + -2.2 739,290 + +0.9 739,290 + -0.1 739,290 + -1.9 739,296 + -0.3 739,298 - +0.9 739,298 - +0.4 739,298 - +1.9 739,298 - -0.7 739,304 - +0.6 739,339 + +1.7 739,357 + -0.4 739,365 - +0.4 739,365 - -1.5 739,376 + -0.7 739,378 + -1.5 739,389 + PGA1_c07190 0.11 +0.2 739,444 + PGA1_c07190 0.16 -1.4 739,452 - PGA1_c07190 0.16 -0.5 739,466 - PGA1_c07190 0.18 +0.4 739,487 - PGA1_c07190 0.20 +0.0 739,493 + PGA1_c07190 0.20 -0.0 739,501 + PGA1_c07190 0.21 -1.1 739,501 + PGA1_c07190 0.21 -0.9 739,501 + PGA1_c07190 0.21 +0.3 739,501 + PGA1_c07190 0.21 +0.3 739,501 - PGA1_c07190 0.21 -0.0 739,509 - PGA1_c07190 0.22 +0.0 739,509 - PGA1_c07190 0.22 +0.7 739,509 - PGA1_c07190 0.22 -0.9 739,509 - PGA1_c07190 0.22 +2.5 739,511 - PGA1_c07190 0.22 -0.3 739,526 + PGA1_c07190 0.23 +0.1 739,569 + PGA1_c07190 0.27 +0.4 739,577 - PGA1_c07190 0.28 +0.4 739,590 - PGA1_c07190 0.29 -1.4 739,605 + PGA1_c07190 0.31 -0.8 739,613 - PGA1_c07190 0.31 -2.1 739,613 - PGA1_c07190 0.31 -1.1 739,695 + PGA1_c07190 0.39 +1.0 739,695 + PGA1_c07190 0.39 +0.6 739,695 + PGA1_c07190 0.39 -0.3 739,695 + PGA1_c07190 0.39 +1.6 739,695 + PGA1_c07190 0.39 -0.3 739,695 + PGA1_c07190 0.39 -0.4 739,695 + PGA1_c07190 0.39 -0.1 739,703 - PGA1_c07190 0.40 +0.2 739,752 + PGA1_c07190 0.44 -1.3 739,912 + PGA1_c07190 0.59 -0.4 739,941 + PGA1_c07190 0.62 +0.9 739,943 + PGA1_c07190 0.62 -1.1 739,945 - PGA1_c07190 0.62 -3.3 739,957 - PGA1_c07190 0.64 +1.3 739,985 + PGA1_c07190 0.66 +0.0 739,985 + PGA1_c07190 0.66 -2.3 739,985 + PGA1_c07190 0.66 +0.1 739,993 - PGA1_c07190 0.67 -1.9 740,045 - PGA1_c07190 0.72 -1.5 740,048 + PGA1_c07190 0.72 -0.9
Or see this region's nucleotide sequence