Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c07170

Experiment: m.b. Vancomycin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c07160 and PGA1_c07170 are separated by 23 nucleotidesPGA1_c07170 and PGA1_c07180 are separated by 144 nucleotides PGA1_c07160: PGA1_c07160 - FOG: WD40 repeat, at 735,792 to 737,102 _c07160 PGA1_c07170: PGA1_c07170 - acetate operon repressor-like protein, at 737,126 to 737,938 _c07170 PGA1_c07180: PGA1_c07180 - 2-hydroxy-3-oxopropionate reductase-like protein, at 738,083 to 739,048 _c07180 Position (kb) 737 738Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 736.159 kb on - strand, within PGA1_c07160at 736.168 kb on - strand, within PGA1_c07160at 736.168 kb on - strand, within PGA1_c07160at 736.224 kb on - strand, within PGA1_c07160at 736.240 kb on - strand, within PGA1_c07160at 736.240 kb on - strand, within PGA1_c07160at 736.342 kb on - strand, within PGA1_c07160at 736.342 kb on - strand, within PGA1_c07160at 736.359 kb on - strand, within PGA1_c07160at 736.360 kb on + strand, within PGA1_c07160at 736.365 kb on + strand, within PGA1_c07160at 736.418 kb on + strand, within PGA1_c07160at 736.495 kb on + strand, within PGA1_c07160at 736.502 kb on - strand, within PGA1_c07160at 736.534 kb on + strand, within PGA1_c07160at 736.559 kb on + strand, within PGA1_c07160at 736.601 kb on - strand, within PGA1_c07160at 736.734 kb on - strand, within PGA1_c07160at 736.736 kb on + strand, within PGA1_c07160at 736.736 kb on + strand, within PGA1_c07160at 736.801 kb on + strand, within PGA1_c07160at 736.817 kb on + strand, within PGA1_c07160at 736.822 kb on + strand, within PGA1_c07160at 736.876 kb on - strand, within PGA1_c07160at 736.880 kb on - strand, within PGA1_c07160at 736.916 kb on - strand, within PGA1_c07160at 736.924 kb on + strand, within PGA1_c07160at 736.932 kb on - strand, within PGA1_c07160at 736.955 kb on + strand, within PGA1_c07160at 736.963 kb on + strand, within PGA1_c07160at 736.991 kb on + strandat 737.030 kb on - strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.053 kb on + strandat 737.061 kb on - strandat 737.061 kb on - strandat 737.061 kb on - strandat 737.061 kb on - strandat 737.061 kb on - strandat 737.061 kb on - strandat 737.061 kb on - strandat 737.061 kb on - strandat 737.061 kb on - strandat 737.097 kb on + strandat 737.142 kb on + strandat 737.142 kb on + strandat 737.150 kb on - strandat 737.282 kb on - strand, within PGA1_c07170at 737.283 kb on - strand, within PGA1_c07170at 737.327 kb on - strand, within PGA1_c07170at 737.385 kb on - strand, within PGA1_c07170at 737.398 kb on - strand, within PGA1_c07170at 737.404 kb on - strand, within PGA1_c07170at 737.430 kb on + strand, within PGA1_c07170at 737.445 kb on + strand, within PGA1_c07170at 737.445 kb on + strand, within PGA1_c07170at 737.508 kb on - strand, within PGA1_c07170at 737.543 kb on + strand, within PGA1_c07170at 737.543 kb on + strand, within PGA1_c07170at 737.551 kb on - strand, within PGA1_c07170at 737.551 kb on - strand, within PGA1_c07170at 737.551 kb on - strand, within PGA1_c07170at 737.560 kb on + strand, within PGA1_c07170at 737.560 kb on + strand, within PGA1_c07170at 737.560 kb on + strand, within PGA1_c07170at 737.560 kb on + strand, within PGA1_c07170at 737.568 kb on - strand, within PGA1_c07170at 737.568 kb on - strand, within PGA1_c07170at 737.568 kb on - strand, within PGA1_c07170at 737.574 kb on - strand, within PGA1_c07170at 737.574 kb on - strand, within PGA1_c07170at 737.576 kb on + strand, within PGA1_c07170at 737.576 kb on + strand, within PGA1_c07170at 737.584 kb on - strand, within PGA1_c07170at 737.598 kb on + strand, within PGA1_c07170at 737.598 kb on + strand, within PGA1_c07170at 737.668 kb on + strand, within PGA1_c07170at 737.671 kb on - strand, within PGA1_c07170at 737.701 kb on - strand, within PGA1_c07170at 737.701 kb on - strand, within PGA1_c07170at 737.787 kb on + strand, within PGA1_c07170at 737.810 kb on + strand, within PGA1_c07170at 737.815 kb on + strand, within PGA1_c07170at 737.823 kb on - strand, within PGA1_c07170at 737.848 kb on + strand, within PGA1_c07170at 737.866 kb on - strandat 737.898 kb on - strandat 738.004 kb on - strandat 738.007 kb on + strandat 738.012 kb on + strandat 738.012 kb on + strandat 738.012 kb on + strandat 738.012 kb on + strandat 738.012 kb on + strandat 738.020 kb on - strandat 738.020 kb on - strandat 738.041 kb on + strandat 738.041 kb on + strandat 738.055 kb on + strandat 738.063 kb on - strandat 738.088 kb on + strandat 738.136 kb on + strandat 738.145 kb on + strandat 738.185 kb on + strand, within PGA1_c07180at 738.240 kb on - strand, within PGA1_c07180at 738.240 kb on - strand, within PGA1_c07180at 738.240 kb on - strand, within PGA1_c07180at 738.324 kb on + strand, within PGA1_c07180at 738.324 kb on + strand, within PGA1_c07180at 738.324 kb on + strand, within PGA1_c07180at 738.324 kb on + strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.332 kb on - strand, within PGA1_c07180at 738.334 kb on + strand, within PGA1_c07180at 738.336 kb on + strand, within PGA1_c07180at 738.355 kb on + strand, within PGA1_c07180at 738.363 kb on + strand, within PGA1_c07180at 738.437 kb on + strand, within PGA1_c07180at 738.466 kb on + strand, within PGA1_c07180at 738.469 kb on - strand, within PGA1_c07180at 738.491 kb on + strand, within PGA1_c07180at 738.491 kb on + strand, within PGA1_c07180at 738.509 kb on + strand, within PGA1_c07180at 738.517 kb on - strand, within PGA1_c07180at 738.517 kb on - strand, within PGA1_c07180at 738.559 kb on + strand, within PGA1_c07180at 738.567 kb on - strand, within PGA1_c07180at 738.594 kb on - strand, within PGA1_c07180at 738.632 kb on + strand, within PGA1_c07180at 738.633 kb on - strand, within PGA1_c07180at 738.633 kb on - strand, within PGA1_c07180at 738.656 kb on + strand, within PGA1_c07180at 738.690 kb on + strand, within PGA1_c07180at 738.707 kb on + strand, within PGA1_c07180at 738.715 kb on - strand, within PGA1_c07180at 738.750 kb on + strand, within PGA1_c07180at 738.766 kb on + strand, within PGA1_c07180at 738.786 kb on + strand, within PGA1_c07180at 738.794 kb on - strand, within PGA1_c07180at 738.856 kb on + strand, within PGA1_c07180at 738.861 kb on + strand, within PGA1_c07180at 738.861 kb on + strand, within PGA1_c07180at 738.863 kb on + strand, within PGA1_c07180at 738.928 kb on + strand, within PGA1_c07180

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml
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736,159 - PGA1_c07160 0.28 -2.5
736,168 - PGA1_c07160 0.29 -0.2
736,168 - PGA1_c07160 0.29 -3.3
736,224 - PGA1_c07160 0.33 -0.6
736,240 - PGA1_c07160 0.34 +0.9
736,240 - PGA1_c07160 0.34 -0.0
736,342 - PGA1_c07160 0.42 +2.0
736,342 - PGA1_c07160 0.42 -0.3
736,359 - PGA1_c07160 0.43 -0.1
736,360 + PGA1_c07160 0.43 -0.1
736,365 + PGA1_c07160 0.44 -0.4
736,418 + PGA1_c07160 0.48 -3.1
736,495 + PGA1_c07160 0.54 +1.6
736,502 - PGA1_c07160 0.54 +1.3
736,534 + PGA1_c07160 0.57 -0.1
736,559 + PGA1_c07160 0.59 -0.4
736,601 - PGA1_c07160 0.62 -1.9
736,734 - PGA1_c07160 0.72 +1.9
736,736 + PGA1_c07160 0.72 +0.3
736,736 + PGA1_c07160 0.72 +0.7
736,801 + PGA1_c07160 0.77 -0.6
736,817 + PGA1_c07160 0.78 -1.3
736,822 + PGA1_c07160 0.79 -0.1
736,876 - PGA1_c07160 0.83 +0.5
736,880 - PGA1_c07160 0.83 +0.9
736,916 - PGA1_c07160 0.86 -1.5
736,924 + PGA1_c07160 0.86 +0.5
736,932 - PGA1_c07160 0.87 -0.9
736,955 + PGA1_c07160 0.89 -1.6
736,963 + PGA1_c07160 0.89 -2.9
736,991 + -1.0
737,030 - +0.9
737,053 + -1.2
737,053 + +0.9
737,053 + -0.1
737,053 + +0.5
737,053 + +0.6
737,053 + -0.9
737,053 + +0.7
737,053 + +0.4
737,053 + +0.1
737,053 + -0.9
737,053 + -0.1
737,053 + +0.5
737,053 + +0.9
737,053 + -0.4
737,053 + -2.8
737,053 + +0.8
737,053 + -2.1
737,053 + +0.0
737,053 + -0.1
737,053 + -0.8
737,053 + +2.1
737,061 - +0.0
737,061 - -0.8
737,061 - +0.5
737,061 - +0.3
737,061 - -0.1
737,061 - -0.9
737,061 - -0.7
737,061 - +0.9
737,061 - -0.0
737,097 + -1.7
737,142 + -0.3
737,142 + -1.3
737,150 - +1.3
737,282 - PGA1_c07170 0.19 -3.0
737,283 - PGA1_c07170 0.19 -0.0
737,327 - PGA1_c07170 0.25 -2.9
737,385 - PGA1_c07170 0.32 -0.1
737,398 - PGA1_c07170 0.33 -2.3
737,404 - PGA1_c07170 0.34 -0.1
737,430 + PGA1_c07170 0.37 -0.2
737,445 + PGA1_c07170 0.39 +0.1
737,445 + PGA1_c07170 0.39 +0.7
737,508 - PGA1_c07170 0.47 -0.9
737,543 + PGA1_c07170 0.51 -0.4
737,543 + PGA1_c07170 0.51 +0.4
737,551 - PGA1_c07170 0.52 -0.1
737,551 - PGA1_c07170 0.52 +0.3
737,551 - PGA1_c07170 0.52 -0.3
737,560 + PGA1_c07170 0.53 -0.7
737,560 + PGA1_c07170 0.53 -0.1
737,560 + PGA1_c07170 0.53 +0.0
737,560 + PGA1_c07170 0.53 -0.4
737,568 - PGA1_c07170 0.54 -0.5
737,568 - PGA1_c07170 0.54 -0.4
737,568 - PGA1_c07170 0.54 +1.3
737,574 - PGA1_c07170 0.55 -2.8
737,574 - PGA1_c07170 0.55 -0.9
737,576 + PGA1_c07170 0.55 -2.1
737,576 + PGA1_c07170 0.55 +0.6
737,584 - PGA1_c07170 0.56 +0.6
737,598 + PGA1_c07170 0.58 -2.5
737,598 + PGA1_c07170 0.58 -0.1
737,668 + PGA1_c07170 0.67 +1.6
737,671 - PGA1_c07170 0.67 +0.3
737,701 - PGA1_c07170 0.71 -1.0
737,701 - PGA1_c07170 0.71 -0.8
737,787 + PGA1_c07170 0.81 -0.8
737,810 + PGA1_c07170 0.84 +1.1
737,815 + PGA1_c07170 0.85 -0.0
737,823 - PGA1_c07170 0.86 -0.4
737,848 + PGA1_c07170 0.89 +0.7
737,866 - +0.9
737,898 - +1.4
738,004 - +2.4
738,007 + +0.1
738,012 + -1.0
738,012 + +1.0
738,012 + +0.6
738,012 + -0.1
738,012 + -0.0
738,020 - -0.7
738,020 - +0.3
738,041 + -1.4
738,041 + +1.3
738,055 + +0.0
738,063 - -0.0
738,088 + -0.3
738,136 + -0.3
738,145 + +0.0
738,185 + PGA1_c07180 0.11 +0.1
738,240 - PGA1_c07180 0.16 -0.4
738,240 - PGA1_c07180 0.16 +0.1
738,240 - PGA1_c07180 0.16 -0.3
738,324 + PGA1_c07180 0.25 -2.1
738,324 + PGA1_c07180 0.25 -2.6
738,324 + PGA1_c07180 0.25 +0.2
738,324 + PGA1_c07180 0.25 +1.4
738,332 - PGA1_c07180 0.26 -1.9
738,332 - PGA1_c07180 0.26 -0.8
738,332 - PGA1_c07180 0.26 -0.9
738,332 - PGA1_c07180 0.26 +0.2
738,332 - PGA1_c07180 0.26 +0.3
738,332 - PGA1_c07180 0.26 -0.8
738,332 - PGA1_c07180 0.26 -0.1
738,332 - PGA1_c07180 0.26 -0.4
738,334 + PGA1_c07180 0.26 -0.5
738,336 + PGA1_c07180 0.26 +0.7
738,355 + PGA1_c07180 0.28 +0.0
738,363 + PGA1_c07180 0.29 -0.1
738,437 + PGA1_c07180 0.37 -1.8
738,466 + PGA1_c07180 0.40 -0.3
738,469 - PGA1_c07180 0.40 -1.3
738,491 + PGA1_c07180 0.42 -0.4
738,491 + PGA1_c07180 0.42 -0.0
738,509 + PGA1_c07180 0.44 +0.1
738,517 - PGA1_c07180 0.45 +0.5
738,517 - PGA1_c07180 0.45 -1.2
738,559 + PGA1_c07180 0.49 -1.7
738,567 - PGA1_c07180 0.50 -0.7
738,594 - PGA1_c07180 0.53 -0.4
738,632 + PGA1_c07180 0.57 -0.3
738,633 - PGA1_c07180 0.57 +0.9
738,633 - PGA1_c07180 0.57 -0.1
738,656 + PGA1_c07180 0.59 +0.5
738,690 + PGA1_c07180 0.63 -0.3
738,707 + PGA1_c07180 0.65 +0.8
738,715 - PGA1_c07180 0.65 +0.4
738,750 + PGA1_c07180 0.69 -2.3
738,766 + PGA1_c07180 0.71 +0.5
738,786 + PGA1_c07180 0.73 -0.3
738,794 - PGA1_c07180 0.74 -0.2
738,856 + PGA1_c07180 0.80 -1.0
738,861 + PGA1_c07180 0.81 +0.9
738,861 + PGA1_c07180 0.81 -2.5
738,863 + PGA1_c07180 0.81 -0.4
738,928 + PGA1_c07180 0.87 -1.6

Or see this region's nucleotide sequence