Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c06540 and PGA1_c06550 are separated by 22 nucleotides PGA1_c06550 and PGA1_c06560 are separated by 82 nucleotides
PGA1_c06540: PGA1_c06540 - dihydropteroate synthase FolP, at 672,070 to 673,011
_c06540
PGA1_c06550: PGA1_c06550 - phosphoglucosamine mutase GlmM, at 673,034 to 674,380
_c06550
PGA1_c06560: PGA1_c06560 - Permeases of the drug/metabolite transporter (DMT) superfamily, at 674,463 to 675,371
_c06560
Position (kb) 673
674
675 Strain fitness (log2 ratio) -2
-1
0
1 at 674.415 kb on - strand at 674.430 kb on - strand at 674.476 kb on + strand at 674.645 kb on - strand, within PGA1_c06560 at 674.647 kb on + strand, within PGA1_c06560 at 674.647 kb on + strand, within PGA1_c06560 at 674.663 kb on - strand, within PGA1_c06560 at 674.689 kb on + strand, within PGA1_c06560 at 674.697 kb on - strand, within PGA1_c06560 at 674.708 kb on - strand, within PGA1_c06560 at 674.721 kb on - strand, within PGA1_c06560 at 674.731 kb on - strand, within PGA1_c06560 at 674.860 kb on - strand, within PGA1_c06560 at 674.882 kb on + strand, within PGA1_c06560 at 674.915 kb on - strand, within PGA1_c06560 at 674.915 kb on - strand, within PGA1_c06560 at 674.941 kb on + strand, within PGA1_c06560 at 675.021 kb on + strand, within PGA1_c06560 at 675.027 kb on - strand, within PGA1_c06560 at 675.028 kb on - strand, within PGA1_c06560 at 675.117 kb on - strand, within PGA1_c06560 at 675.134 kb on - strand, within PGA1_c06560 at 675.134 kb on - strand, within PGA1_c06560 at 675.182 kb on - strand, within PGA1_c06560 at 675.191 kb on + strand, within PGA1_c06560 at 675.212 kb on + strand, within PGA1_c06560 at 675.212 kb on + strand, within PGA1_c06560 at 675.220 kb on - strand, within PGA1_c06560 at 675.222 kb on + strand, within PGA1_c06560 at 675.230 kb on - strand, within PGA1_c06560 at 675.230 kb on - strand, within PGA1_c06560 at 675.267 kb on - strand, within PGA1_c06560 at 675.269 kb on + strand, within PGA1_c06560 at 675.269 kb on + strand, within PGA1_c06560 at 675.277 kb on - strand, within PGA1_c06560 at 675.279 kb on + strand, within PGA1_c06560 at 675.349 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 674,415 - -1.4 674,430 - +0.2 674,476 + -1.2 674,645 - PGA1_c06560 0.20 +0.6 674,647 + PGA1_c06560 0.20 -0.3 674,647 + PGA1_c06560 0.20 +0.6 674,663 - PGA1_c06560 0.22 +0.2 674,689 + PGA1_c06560 0.25 +1.7 674,697 - PGA1_c06560 0.26 -0.1 674,708 - PGA1_c06560 0.27 +1.6 674,721 - PGA1_c06560 0.28 +0.4 674,731 - PGA1_c06560 0.29 -2.3 674,860 - PGA1_c06560 0.44 -1.6 674,882 + PGA1_c06560 0.46 -2.0 674,915 - PGA1_c06560 0.50 -0.8 674,915 - PGA1_c06560 0.50 +0.5 674,941 + PGA1_c06560 0.53 +1.4 675,021 + PGA1_c06560 0.61 +0.9 675,027 - PGA1_c06560 0.62 +0.1 675,028 - PGA1_c06560 0.62 -0.2 675,117 - PGA1_c06560 0.72 -0.3 675,134 - PGA1_c06560 0.74 +0.5 675,134 - PGA1_c06560 0.74 -0.3 675,182 - PGA1_c06560 0.79 +0.4 675,191 + PGA1_c06560 0.80 +0.0 675,212 + PGA1_c06560 0.82 +1.3 675,212 + PGA1_c06560 0.82 -2.3 675,220 - PGA1_c06560 0.83 +1.5 675,222 + PGA1_c06560 0.83 +0.1 675,230 - PGA1_c06560 0.84 -0.7 675,230 - PGA1_c06560 0.84 +0.2 675,267 - PGA1_c06560 0.88 +0.5 675,269 + PGA1_c06560 0.89 +1.0 675,269 + PGA1_c06560 0.89 -2.3 675,277 - PGA1_c06560 0.90 +1.7 675,279 + PGA1_c06560 0.90 -0.2 675,349 - -0.0
Or see this region's nucleotide sequence