Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c05880 and PGA1_c05890 are separated by 25 nucleotides PGA1_c05890 and PGA1_c05900 are separated by 114 nucleotides PGA1_c05900 and PGA1_c05910 are separated by 3 nucleotides PGA1_c05910 and PGA1_c05920 are separated by 13 nucleotides
PGA1_c05880: PGA1_c05880 - hypothetical protein, at 601,951 to 602,619
_c05880
PGA1_c05890: PGA1_c05890 - thioesterase domain-containing protein, at 602,645 to 603,031
_c05890
PGA1_c05900: PGA1_c05900 - protein TolQ, at 603,146 to 603,841
_c05900
PGA1_c05910: PGA1_c05910 - putative biopolymer transport protein ExbD, at 603,845 to 604,333
_c05910
PGA1_c05920: PGA1_c05920 - hypothetical protein, at 604,347 to 605,486
_c05920
Position (kb) 603
604 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 602.158 kb on - strand, within PGA1_c05880 at 602.177 kb on + strand, within PGA1_c05880 at 602.195 kb on - strand, within PGA1_c05880 at 602.276 kb on - strand, within PGA1_c05880 at 602.338 kb on + strand, within PGA1_c05880 at 602.383 kb on + strand, within PGA1_c05880 at 602.383 kb on + strand, within PGA1_c05880 at 602.405 kb on - strand, within PGA1_c05880 at 602.500 kb on + strand, within PGA1_c05880 at 602.548 kb on - strand, within PGA1_c05880 at 602.613 kb on + strand at 602.627 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.634 kb on + strand at 602.648 kb on + strand at 602.682 kb on + strand at 602.737 kb on + strand, within PGA1_c05890 at 602.753 kb on - strand, within PGA1_c05890 at 602.779 kb on - strand, within PGA1_c05890 at 602.795 kb on + strand, within PGA1_c05890 at 602.799 kb on - strand, within PGA1_c05890 at 602.800 kb on + strand, within PGA1_c05890 at 602.800 kb on + strand, within PGA1_c05890 at 602.827 kb on + strand, within PGA1_c05890 at 602.843 kb on + strand, within PGA1_c05890 at 602.879 kb on - strand, within PGA1_c05890 at 602.887 kb on + strand, within PGA1_c05890 at 602.895 kb on - strand, within PGA1_c05890 at 602.895 kb on - strand, within PGA1_c05890 at 602.895 kb on - strand, within PGA1_c05890 at 602.900 kb on - strand, within PGA1_c05890 at 602.900 kb on - strand, within PGA1_c05890 at 602.900 kb on - strand, within PGA1_c05890 at 603.086 kb on - strand at 604.337 kb on + strand at 604.337 kb on + strand at 604.337 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 602,158 - PGA1_c05880 0.31 -0.7 602,177 + PGA1_c05880 0.34 +0.2 602,195 - PGA1_c05880 0.36 +0.2 602,276 - PGA1_c05880 0.49 +0.0 602,338 + PGA1_c05880 0.58 -1.1 602,383 + PGA1_c05880 0.65 +0.9 602,383 + PGA1_c05880 0.65 +0.4 602,405 - PGA1_c05880 0.68 -1.1 602,500 + PGA1_c05880 0.82 -0.6 602,548 - PGA1_c05880 0.89 +0.3 602,613 + +0.5 602,627 + -0.9 602,634 + +0.4 602,634 + -2.1 602,634 + +2.5 602,634 + -0.7 602,634 + +0.3 602,648 + -1.9 602,682 + -1.1 602,737 + PGA1_c05890 0.24 -3.1 602,753 - PGA1_c05890 0.28 -0.3 602,779 - PGA1_c05890 0.35 -0.2 602,795 + PGA1_c05890 0.39 -0.1 602,799 - PGA1_c05890 0.40 -1.9 602,800 + PGA1_c05890 0.40 +0.2 602,800 + PGA1_c05890 0.40 -0.6 602,827 + PGA1_c05890 0.47 -0.2 602,843 + PGA1_c05890 0.51 +0.1 602,879 - PGA1_c05890 0.60 +0.1 602,887 + PGA1_c05890 0.63 -0.4 602,895 - PGA1_c05890 0.65 -2.0 602,895 - PGA1_c05890 0.65 +2.4 602,895 - PGA1_c05890 0.65 -0.1 602,900 - PGA1_c05890 0.66 -0.1 602,900 - PGA1_c05890 0.66 -0.5 602,900 - PGA1_c05890 0.66 -2.2 603,086 - +0.9 604,337 + +0.9 604,337 + -1.7 604,337 + -2.5
Or see this region's nucleotide sequence