Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04390 and PGA1_c04400 are separated by 415 nucleotides PGA1_c04400 and PGA1_c04410 are separated by 4 nucleotides
PGA1_c04390: PGA1_c04390 - Predicted glycosyl transferase, at 423,995 to 425,206
_c04390
PGA1_c04400: PGA1_c04400 - mechanosensitive ion channel-like protein, at 425,622 to 427,991
_c04400
PGA1_c04410: PGA1_c04410 - Predicted acyl-CoA transferases/carnitine dehydratase, at 427,996 to 429,372
_c04410
Position (kb) 425
426
427
428 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 424.629 kb on - strand, within PGA1_c04390 at 424.629 kb on - strand, within PGA1_c04390 at 424.779 kb on + strand, within PGA1_c04390 at 424.821 kb on - strand, within PGA1_c04390 at 424.891 kb on + strand, within PGA1_c04390 at 424.899 kb on + strand, within PGA1_c04390 at 424.912 kb on - strand, within PGA1_c04390 at 424.963 kb on + strand, within PGA1_c04390 at 425.044 kb on + strand, within PGA1_c04390 at 425.055 kb on + strand, within PGA1_c04390 at 425.063 kb on - strand, within PGA1_c04390 at 425.143 kb on - strand at 425.189 kb on - strand at 425.334 kb on + strand at 425.347 kb on + strand at 425.348 kb on - strand at 425.360 kb on - strand at 425.360 kb on - strand at 425.360 kb on - strand at 425.362 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.377 kb on + strand at 425.385 kb on - strand at 425.385 kb on - strand at 425.395 kb on - strand at 425.439 kb on + strand at 425.447 kb on - strand at 425.447 kb on - strand at 425.448 kb on - strand at 425.469 kb on - strand at 425.513 kb on + strand at 425.513 kb on + strand at 425.521 kb on - strand at 425.534 kb on + strand at 425.542 kb on - strand at 425.608 kb on + strand at 425.698 kb on + strand at 425.698 kb on + strand at 425.699 kb on - strand at 425.706 kb on - strand at 425.706 kb on - strand at 425.716 kb on - strand at 425.765 kb on + strand at 425.797 kb on + strand at 425.829 kb on - strand at 425.840 kb on + strand at 425.853 kb on - strand at 425.891 kb on - strand, within PGA1_c04400 at 425.899 kb on + strand, within PGA1_c04400 at 425.904 kb on + strand, within PGA1_c04400 at 425.904 kb on + strand, within PGA1_c04400 at 425.904 kb on + strand, within PGA1_c04400 at 425.907 kb on - strand, within PGA1_c04400 at 425.912 kb on - strand, within PGA1_c04400 at 425.917 kb on - strand, within PGA1_c04400 at 425.936 kb on + strand, within PGA1_c04400 at 425.936 kb on + strand, within PGA1_c04400 at 425.946 kb on + strand, within PGA1_c04400 at 425.946 kb on + strand, within PGA1_c04400 at 425.946 kb on + strand, within PGA1_c04400 at 425.954 kb on - strand, within PGA1_c04400 at 425.954 kb on - strand, within PGA1_c04400 at 425.954 kb on - strand, within PGA1_c04400 at 425.967 kb on - strand, within PGA1_c04400 at 425.999 kb on - strand, within PGA1_c04400 at 425.999 kb on - strand, within PGA1_c04400 at 426.019 kb on - strand, within PGA1_c04400 at 426.019 kb on - strand, within PGA1_c04400 at 426.024 kb on - strand, within PGA1_c04400 at 426.024 kb on - strand, within PGA1_c04400 at 426.029 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.040 kb on + strand, within PGA1_c04400 at 426.048 kb on - strand, within PGA1_c04400 at 426.048 kb on - strand, within PGA1_c04400 at 426.082 kb on + strand, within PGA1_c04400 at 426.096 kb on + strand, within PGA1_c04400 at 426.096 kb on + strand, within PGA1_c04400 at 426.096 kb on + strand, within PGA1_c04400 at 426.104 kb on - strand, within PGA1_c04400 at 426.120 kb on + strand, within PGA1_c04400 at 426.127 kb on + strand, within PGA1_c04400 at 426.128 kb on + strand, within PGA1_c04400 at 426.128 kb on - strand, within PGA1_c04400 at 426.162 kb on + strand, within PGA1_c04400 at 426.201 kb on + strand, within PGA1_c04400 at 426.212 kb on + strand, within PGA1_c04400 at 426.213 kb on + strand, within PGA1_c04400 at 426.220 kb on - strand, within PGA1_c04400 at 426.220 kb on - strand, within PGA1_c04400 at 426.220 kb on - strand, within PGA1_c04400 at 426.221 kb on - strand, within PGA1_c04400 at 426.235 kb on - strand, within PGA1_c04400 at 426.245 kb on + strand, within PGA1_c04400 at 426.245 kb on + strand, within PGA1_c04400 at 426.245 kb on + strand, within PGA1_c04400 at 426.245 kb on + strand, within PGA1_c04400 at 426.245 kb on + strand, within PGA1_c04400 at 426.253 kb on - strand, within PGA1_c04400 at 426.253 kb on - strand, within PGA1_c04400 at 426.253 kb on - strand, within PGA1_c04400 at 426.253 kb on - strand, within PGA1_c04400 at 426.253 kb on - strand, within PGA1_c04400 at 426.258 kb on - strand, within PGA1_c04400 at 426.308 kb on + strand, within PGA1_c04400 at 426.308 kb on + strand, within PGA1_c04400 at 426.308 kb on + strand, within PGA1_c04400 at 426.318 kb on + strand, within PGA1_c04400 at 426.326 kb on - strand, within PGA1_c04400 at 426.326 kb on - strand, within PGA1_c04400 at 426.327 kb on - strand, within PGA1_c04400 at 426.337 kb on - strand, within PGA1_c04400 at 426.353 kb on - strand, within PGA1_c04400 at 426.375 kb on - strand, within PGA1_c04400 at 426.375 kb on - strand, within PGA1_c04400 at 426.378 kb on + strand, within PGA1_c04400 at 426.381 kb on - strand, within PGA1_c04400 at 426.429 kb on - strand, within PGA1_c04400 at 426.463 kb on + strand, within PGA1_c04400 at 426.473 kb on + strand, within PGA1_c04400 at 426.512 kb on + strand, within PGA1_c04400 at 426.545 kb on + strand, within PGA1_c04400 at 426.545 kb on + strand, within PGA1_c04400 at 426.553 kb on - strand, within PGA1_c04400 at 426.624 kb on + strand, within PGA1_c04400 at 426.642 kb on - strand, within PGA1_c04400 at 426.716 kb on - strand, within PGA1_c04400 at 426.774 kb on + strand, within PGA1_c04400 at 426.774 kb on + strand, within PGA1_c04400 at 426.803 kb on - strand, within PGA1_c04400 at 426.812 kb on - strand, within PGA1_c04400 at 426.859 kb on - strand, within PGA1_c04400 at 426.984 kb on - strand, within PGA1_c04400 at 426.994 kb on - strand, within PGA1_c04400 at 426.996 kb on + strand, within PGA1_c04400 at 427.028 kb on - strand, within PGA1_c04400 at 427.052 kb on + strand, within PGA1_c04400 at 427.062 kb on + strand, within PGA1_c04400 at 427.079 kb on - strand, within PGA1_c04400 at 427.099 kb on - strand, within PGA1_c04400 at 427.132 kb on - strand, within PGA1_c04400 at 427.190 kb on + strand, within PGA1_c04400 at 427.208 kb on - strand, within PGA1_c04400 at 427.208 kb on - strand, within PGA1_c04400 at 427.222 kb on - strand, within PGA1_c04400 at 427.248 kb on + strand, within PGA1_c04400 at 427.278 kb on - strand, within PGA1_c04400 at 427.306 kb on + strand, within PGA1_c04400 at 427.452 kb on + strand, within PGA1_c04400 at 427.459 kb on - strand, within PGA1_c04400 at 427.486 kb on + strand, within PGA1_c04400 at 427.494 kb on - strand, within PGA1_c04400 at 427.520 kb on - strand, within PGA1_c04400 at 427.696 kb on - strand, within PGA1_c04400 at 427.703 kb on + strand, within PGA1_c04400 at 427.827 kb on + strand at 427.840 kb on + strand at 427.857 kb on - strand at 427.877 kb on + strand at 427.877 kb on + strand at 427.941 kb on + strand at 427.950 kb on + strand at 427.958 kb on - strand at 427.992 kb on + strand at 427.992 kb on + strand at 428.000 kb on - strand at 428.008 kb on + strand at 428.168 kb on + strand, within PGA1_c04410 at 428.208 kb on + strand, within PGA1_c04410 at 428.219 kb on + strand, within PGA1_c04410 at 428.224 kb on + strand, within PGA1_c04410 at 428.237 kb on - strand, within PGA1_c04410 at 428.262 kb on + strand, within PGA1_c04410 at 428.267 kb on + strand, within PGA1_c04410 at 428.279 kb on + strand, within PGA1_c04410 at 428.279 kb on + strand, within PGA1_c04410 at 428.287 kb on - strand, within PGA1_c04410 at 428.289 kb on - strand, within PGA1_c04410 at 428.366 kb on + strand, within PGA1_c04410 at 428.374 kb on - strand, within PGA1_c04410 at 428.387 kb on + strand, within PGA1_c04410 at 428.395 kb on - strand, within PGA1_c04410 at 428.427 kb on + strand, within PGA1_c04410 at 428.430 kb on - strand, within PGA1_c04410 at 428.445 kb on - strand, within PGA1_c04410 at 428.472 kb on + strand, within PGA1_c04410 at 428.516 kb on - strand, within PGA1_c04410 at 428.523 kb on + strand, within PGA1_c04410 at 428.570 kb on - strand, within PGA1_c04410 at 428.611 kb on - strand, within PGA1_c04410 at 428.611 kb on - strand, within PGA1_c04410 at 428.613 kb on + strand, within PGA1_c04410 at 428.613 kb on + strand, within PGA1_c04410 at 428.620 kb on + strand, within PGA1_c04410 at 428.620 kb on + strand, within PGA1_c04410 at 428.622 kb on + strand, within PGA1_c04410 at 428.628 kb on - strand, within PGA1_c04410 at 428.628 kb on - strand, within PGA1_c04410 at 428.630 kb on - strand, within PGA1_c04410 at 428.637 kb on + strand, within PGA1_c04410 at 428.637 kb on + strand, within PGA1_c04410 at 428.637 kb on + strand, within PGA1_c04410 at 428.638 kb on - strand, within PGA1_c04410 at 428.645 kb on - strand, within PGA1_c04410 at 428.682 kb on + strand, within PGA1_c04410 at 428.750 kb on - strand, within PGA1_c04410 at 428.776 kb on + strand, within PGA1_c04410 at 428.798 kb on - strand, within PGA1_c04410 at 428.855 kb on + strand, within PGA1_c04410 at 428.891 kb on + strand, within PGA1_c04410 at 428.891 kb on + strand, within PGA1_c04410 at 428.899 kb on - strand, within PGA1_c04410 at 428.899 kb on - strand, within PGA1_c04410 at 428.929 kb on + strand, within PGA1_c04410 at 428.932 kb on + strand, within PGA1_c04410
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 424,629 - PGA1_c04390 0.52 -2.3 424,629 - PGA1_c04390 0.52 -0.4 424,779 + PGA1_c04390 0.65 -1.6 424,821 - PGA1_c04390 0.68 -1.9 424,891 + PGA1_c04390 0.74 -1.4 424,899 + PGA1_c04390 0.75 -1.5 424,912 - PGA1_c04390 0.76 -2.8 424,963 + PGA1_c04390 0.80 +1.8 425,044 + PGA1_c04390 0.87 -0.6 425,055 + PGA1_c04390 0.87 -1.0 425,063 - PGA1_c04390 0.88 -1.2 425,143 - -1.0 425,189 - -1.0 425,334 + +1.0 425,347 + -3.6 425,348 - -0.5 425,360 - -2.6 425,360 - -1.4 425,360 - -3.0 425,362 + +0.4 425,377 + -2.0 425,377 + -1.9 425,377 + -1.7 425,377 + -2.4 425,377 + -2.6 425,385 - -2.0 425,385 - -1.4 425,395 - -0.9 425,439 + -2.8 425,447 - -2.0 425,447 - -0.6 425,448 - -1.6 425,469 - +2.0 425,513 + -0.5 425,513 + +0.4 425,521 - -0.6 425,534 + +0.6 425,542 - +0.5 425,608 + +0.0 425,698 + -1.1 425,698 + +0.4 425,699 - -0.0 425,706 - +1.1 425,706 - +0.6 425,716 - +0.4 425,765 + -1.2 425,797 + +2.5 425,829 - +0.6 425,840 + +2.3 425,853 - +1.2 425,891 - PGA1_c04400 0.11 -1.3 425,899 + PGA1_c04400 0.12 -0.7 425,904 + PGA1_c04400 0.12 +0.3 425,904 + PGA1_c04400 0.12 -0.3 425,904 + PGA1_c04400 0.12 -2.9 425,907 - PGA1_c04400 0.12 -1.4 425,912 - PGA1_c04400 0.12 -0.7 425,917 - PGA1_c04400 0.12 -0.2 425,936 + PGA1_c04400 0.13 -1.4 425,936 + PGA1_c04400 0.13 -0.8 425,946 + PGA1_c04400 0.14 +1.5 425,946 + PGA1_c04400 0.14 +0.7 425,946 + PGA1_c04400 0.14 +1.0 425,954 - PGA1_c04400 0.14 -1.6 425,954 - PGA1_c04400 0.14 +1.0 425,954 - PGA1_c04400 0.14 +0.6 425,967 - PGA1_c04400 0.15 -0.2 425,999 - PGA1_c04400 0.16 -0.3 425,999 - PGA1_c04400 0.16 -0.0 426,019 - PGA1_c04400 0.17 +0.4 426,019 - PGA1_c04400 0.17 -0.3 426,024 - PGA1_c04400 0.17 -0.7 426,024 - PGA1_c04400 0.17 -1.0 426,029 + PGA1_c04400 0.17 +0.6 426,040 + PGA1_c04400 0.18 -0.2 426,040 + PGA1_c04400 0.18 +1.2 426,040 + PGA1_c04400 0.18 +0.0 426,040 + PGA1_c04400 0.18 -0.0 426,040 + PGA1_c04400 0.18 -1.1 426,040 + PGA1_c04400 0.18 -0.0 426,048 - PGA1_c04400 0.18 -1.4 426,048 - PGA1_c04400 0.18 -2.0 426,082 + PGA1_c04400 0.19 -1.2 426,096 + PGA1_c04400 0.20 +0.2 426,096 + PGA1_c04400 0.20 +0.2 426,096 + PGA1_c04400 0.20 -0.3 426,104 - PGA1_c04400 0.20 -1.6 426,120 + PGA1_c04400 0.21 -0.1 426,127 + PGA1_c04400 0.21 -1.0 426,128 + PGA1_c04400 0.21 -0.9 426,128 - PGA1_c04400 0.21 +0.1 426,162 + PGA1_c04400 0.23 -0.0 426,201 + PGA1_c04400 0.24 +0.5 426,212 + PGA1_c04400 0.25 +2.8 426,213 + PGA1_c04400 0.25 +0.4 426,220 - PGA1_c04400 0.25 +1.2 426,220 - PGA1_c04400 0.25 -1.4 426,220 - PGA1_c04400 0.25 -1.6 426,221 - PGA1_c04400 0.25 -0.2 426,235 - PGA1_c04400 0.26 +2.0 426,245 + PGA1_c04400 0.26 +0.1 426,245 + PGA1_c04400 0.26 +0.3 426,245 + PGA1_c04400 0.26 -0.5 426,245 + PGA1_c04400 0.26 +0.7 426,245 + PGA1_c04400 0.26 -1.1 426,253 - PGA1_c04400 0.27 -0.5 426,253 - PGA1_c04400 0.27 -0.5 426,253 - PGA1_c04400 0.27 -1.6 426,253 - PGA1_c04400 0.27 -3.1 426,253 - PGA1_c04400 0.27 +2.8 426,258 - PGA1_c04400 0.27 +1.5 426,308 + PGA1_c04400 0.29 -1.2 426,308 + PGA1_c04400 0.29 -0.6 426,308 + PGA1_c04400 0.29 +1.0 426,318 + PGA1_c04400 0.29 -0.2 426,326 - PGA1_c04400 0.30 +1.1 426,326 - PGA1_c04400 0.30 -0.0 426,327 - PGA1_c04400 0.30 -1.0 426,337 - PGA1_c04400 0.30 +0.8 426,353 - PGA1_c04400 0.31 -0.1 426,375 - PGA1_c04400 0.32 +0.2 426,375 - PGA1_c04400 0.32 +0.8 426,378 + PGA1_c04400 0.32 -1.3 426,381 - PGA1_c04400 0.32 -0.3 426,429 - PGA1_c04400 0.34 -0.5 426,463 + PGA1_c04400 0.35 +1.0 426,473 + PGA1_c04400 0.36 -0.1 426,512 + PGA1_c04400 0.38 +0.4 426,545 + PGA1_c04400 0.39 -0.0 426,545 + PGA1_c04400 0.39 +1.0 426,553 - PGA1_c04400 0.39 +0.3 426,624 + PGA1_c04400 0.42 -0.2 426,642 - PGA1_c04400 0.43 -0.0 426,716 - PGA1_c04400 0.46 +0.8 426,774 + PGA1_c04400 0.49 -1.0 426,774 + PGA1_c04400 0.49 +2.0 426,803 - PGA1_c04400 0.50 +0.0 426,812 - PGA1_c04400 0.50 +1.0 426,859 - PGA1_c04400 0.52 +1.0 426,984 - PGA1_c04400 0.57 -0.5 426,994 - PGA1_c04400 0.58 +1.9 426,996 + PGA1_c04400 0.58 -0.1 427,028 - PGA1_c04400 0.59 +1.4 427,052 + PGA1_c04400 0.60 +0.5 427,062 + PGA1_c04400 0.61 -1.9 427,079 - PGA1_c04400 0.61 -0.5 427,099 - PGA1_c04400 0.62 -0.8 427,132 - PGA1_c04400 0.64 -1.0 427,190 + PGA1_c04400 0.66 +1.5 427,208 - PGA1_c04400 0.67 -0.3 427,208 - PGA1_c04400 0.67 -0.5 427,222 - PGA1_c04400 0.68 -0.0 427,248 + PGA1_c04400 0.69 +0.5 427,278 - PGA1_c04400 0.70 +0.0 427,306 + PGA1_c04400 0.71 +1.2 427,452 + PGA1_c04400 0.77 +2.0 427,459 - PGA1_c04400 0.78 -0.5 427,486 + PGA1_c04400 0.79 -1.8 427,494 - PGA1_c04400 0.79 -0.6 427,520 - PGA1_c04400 0.80 +0.4 427,696 - PGA1_c04400 0.88 -1.5 427,703 + PGA1_c04400 0.88 +0.7 427,827 + +1.2 427,840 + -2.9 427,857 - -0.0 427,877 + -0.8 427,877 + +0.3 427,941 + -0.4 427,950 + -2.7 427,958 - -0.0 427,992 + -0.0 427,992 + -1.6 428,000 - +0.0 428,008 + +0.0 428,168 + PGA1_c04410 0.12 +1.5 428,208 + PGA1_c04410 0.15 -1.0 428,219 + PGA1_c04410 0.16 -0.5 428,224 + PGA1_c04410 0.17 +0.4 428,237 - PGA1_c04410 0.18 +0.4 428,262 + PGA1_c04410 0.19 -1.2 428,267 + PGA1_c04410 0.20 -0.6 428,279 + PGA1_c04410 0.21 -0.0 428,279 + PGA1_c04410 0.21 +2.4 428,287 - PGA1_c04410 0.21 -0.5 428,289 - PGA1_c04410 0.21 +0.2 428,366 + PGA1_c04410 0.27 +0.7 428,374 - PGA1_c04410 0.27 +2.3 428,387 + PGA1_c04410 0.28 +0.3 428,395 - PGA1_c04410 0.29 +3.8 428,427 + PGA1_c04410 0.31 -0.7 428,430 - PGA1_c04410 0.32 +1.5 428,445 - PGA1_c04410 0.33 +1.4 428,472 + PGA1_c04410 0.35 -1.4 428,516 - PGA1_c04410 0.38 +1.2 428,523 + PGA1_c04410 0.38 -0.8 428,570 - PGA1_c04410 0.42 -0.9 428,611 - PGA1_c04410 0.45 -1.4 428,611 - PGA1_c04410 0.45 +1.0 428,613 + PGA1_c04410 0.45 -0.1 428,613 + PGA1_c04410 0.45 +0.2 428,620 + PGA1_c04410 0.45 +0.2 428,620 + PGA1_c04410 0.45 +1.1 428,622 + PGA1_c04410 0.45 +0.8 428,628 - PGA1_c04410 0.46 +0.6 428,628 - PGA1_c04410 0.46 -0.4 428,630 - PGA1_c04410 0.46 -0.3 428,637 + PGA1_c04410 0.47 +1.2 428,637 + PGA1_c04410 0.47 +0.4 428,637 + PGA1_c04410 0.47 -0.6 428,638 - PGA1_c04410 0.47 +0.4 428,645 - PGA1_c04410 0.47 -0.5 428,682 + PGA1_c04410 0.50 +0.9 428,750 - PGA1_c04410 0.55 +0.8 428,776 + PGA1_c04410 0.57 +1.3 428,798 - PGA1_c04410 0.58 +0.3 428,855 + PGA1_c04410 0.62 -1.0 428,891 + PGA1_c04410 0.65 -1.0 428,891 + PGA1_c04410 0.65 +0.5 428,899 - PGA1_c04410 0.66 +1.1 428,899 - PGA1_c04410 0.66 +1.0 428,929 + PGA1_c04410 0.68 -0.6 428,932 + PGA1_c04410 0.68 +1.5
Or see this region's nucleotide sequence