Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04270

Experiment: m.b. Vancomycin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04260 and PGA1_c04270 are separated by 220 nucleotidesPGA1_c04270 and PGA1_c04280 overlap by 1 nucleotidesPGA1_c04280 and PGA1_c04290 are separated by 9 nucleotides PGA1_c04260: PGA1_c04260 - protein PhnI, at 412,512 to 413,621 _c04260 PGA1_c04270: PGA1_c04270 - protein PhnJ, at 413,842 to 414,699 _c04270 PGA1_c04280: PGA1_c04280 - phosphonates transport ATP-binding protein PhnK, at 414,699 to 415,469 _c04280 PGA1_c04290: PGA1_c04290 - phosphonates transport ATP-binding protein PhnL, at 415,479 to 416,162 _c04290 Position (kb) 413 414 415Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 412.855 kb on + strand, within PGA1_c04260at 412.870 kb on - strand, within PGA1_c04260at 412.922 kb on - strand, within PGA1_c04260at 412.924 kb on + strand, within PGA1_c04260at 412.943 kb on + strand, within PGA1_c04260at 412.961 kb on - strand, within PGA1_c04260at 413.024 kb on + strand, within PGA1_c04260at 413.032 kb on - strand, within PGA1_c04260at 413.116 kb on - strand, within PGA1_c04260at 413.118 kb on + strand, within PGA1_c04260at 413.126 kb on - strand, within PGA1_c04260at 413.133 kb on - strand, within PGA1_c04260at 413.144 kb on - strand, within PGA1_c04260at 413.240 kb on - strand, within PGA1_c04260at 413.284 kb on + strand, within PGA1_c04260at 413.284 kb on + strand, within PGA1_c04260at 413.292 kb on - strand, within PGA1_c04260at 413.292 kb on - strand, within PGA1_c04260at 413.292 kb on - strand, within PGA1_c04260at 413.294 kb on + strand, within PGA1_c04260at 413.302 kb on - strand, within PGA1_c04260at 413.303 kb on + strand, within PGA1_c04260at 413.311 kb on - strand, within PGA1_c04260at 413.324 kb on + strand, within PGA1_c04260at 413.384 kb on - strand, within PGA1_c04260at 413.385 kb on - strand, within PGA1_c04260at 413.395 kb on - strand, within PGA1_c04260at 413.407 kb on + strand, within PGA1_c04260at 413.407 kb on + strand, within PGA1_c04260at 413.429 kb on + strand, within PGA1_c04260at 413.437 kb on + strand, within PGA1_c04260at 413.460 kb on + strand, within PGA1_c04260at 413.486 kb on + strand, within PGA1_c04260at 413.507 kb on + strand, within PGA1_c04260at 413.507 kb on + strand, within PGA1_c04260at 413.507 kb on + strand, within PGA1_c04260at 413.654 kb on + strandat 413.654 kb on + strandat 413.654 kb on + strandat 413.662 kb on - strandat 413.662 kb on - strandat 413.662 kb on - strandat 413.662 kb on - strandat 413.710 kb on + strandat 413.725 kb on + strandat 413.730 kb on + strandat 413.733 kb on - strandat 413.777 kb on - strandat 413.777 kb on - strandat 413.848 kb on + strandat 413.920 kb on - strandat 413.965 kb on + strand, within PGA1_c04270at 413.984 kb on - strand, within PGA1_c04270at 413.987 kb on + strand, within PGA1_c04270at 413.997 kb on - strand, within PGA1_c04270at 414.002 kb on - strand, within PGA1_c04270at 414.002 kb on - strand, within PGA1_c04270at 414.059 kb on + strand, within PGA1_c04270at 414.059 kb on + strand, within PGA1_c04270at 414.060 kb on - strand, within PGA1_c04270at 414.096 kb on + strand, within PGA1_c04270at 414.137 kb on + strand, within PGA1_c04270at 414.150 kb on - strand, within PGA1_c04270at 414.186 kb on + strand, within PGA1_c04270at 414.228 kb on - strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.230 kb on + strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.238 kb on - strand, within PGA1_c04270at 414.331 kb on + strand, within PGA1_c04270at 414.347 kb on - strand, within PGA1_c04270at 414.411 kb on + strand, within PGA1_c04270at 414.441 kb on + strand, within PGA1_c04270at 414.452 kb on + strand, within PGA1_c04270at 414.452 kb on + strand, within PGA1_c04270at 414.452 kb on + strand, within PGA1_c04270at 414.460 kb on - strand, within PGA1_c04270at 414.460 kb on - strand, within PGA1_c04270at 414.460 kb on - strand, within PGA1_c04270at 414.473 kb on - strand, within PGA1_c04270at 414.473 kb on - strand, within PGA1_c04270at 414.488 kb on - strand, within PGA1_c04270at 414.531 kb on + strand, within PGA1_c04270at 414.531 kb on + strand, within PGA1_c04270at 414.544 kb on - strand, within PGA1_c04270at 414.544 kb on - strand, within PGA1_c04270at 414.573 kb on - strand, within PGA1_c04270at 414.576 kb on - strand, within PGA1_c04270at 414.734 kb on + strandat 414.734 kb on + strandat 414.734 kb on + strandat 414.734 kb on + strandat 414.742 kb on - strandat 414.757 kb on + strandat 414.762 kb on + strandat 414.762 kb on + strandat 414.762 kb on + strandat 414.765 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.770 kb on - strandat 414.792 kb on + strand, within PGA1_c04280at 414.836 kb on + strand, within PGA1_c04280at 414.841 kb on + strand, within PGA1_c04280at 414.842 kb on - strand, within PGA1_c04280at 414.844 kb on + strand, within PGA1_c04280at 414.844 kb on + strand, within PGA1_c04280at 414.850 kb on - strand, within PGA1_c04280at 414.926 kb on + strand, within PGA1_c04280at 414.960 kb on + strand, within PGA1_c04280at 414.960 kb on + strand, within PGA1_c04280at 414.960 kb on + strand, within PGA1_c04280at 415.037 kb on + strand, within PGA1_c04280at 415.037 kb on + strand, within PGA1_c04280at 415.037 kb on + strand, within PGA1_c04280at 415.045 kb on - strand, within PGA1_c04280at 415.078 kb on - strand, within PGA1_c04280at 415.093 kb on + strand, within PGA1_c04280at 415.093 kb on + strand, within PGA1_c04280at 415.101 kb on - strand, within PGA1_c04280at 415.218 kb on + strand, within PGA1_c04280at 415.242 kb on - strand, within PGA1_c04280at 415.291 kb on + strand, within PGA1_c04280at 415.291 kb on + strand, within PGA1_c04280at 415.299 kb on - strand, within PGA1_c04280at 415.387 kb on + strand, within PGA1_c04280at 415.400 kb on - strandat 415.435 kb on - strandat 415.463 kb on + strandat 415.507 kb on + strandat 415.507 kb on + strandat 415.520 kb on - strandat 415.592 kb on + strand, within PGA1_c04290at 415.600 kb on - strand, within PGA1_c04290at 415.679 kb on - strand, within PGA1_c04290at 415.692 kb on - strand, within PGA1_c04290at 415.699 kb on + strand, within PGA1_c04290

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml
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412,855 + PGA1_c04260 0.31 -2.3
412,870 - PGA1_c04260 0.32 -1.4
412,922 - PGA1_c04260 0.37 +0.0
412,924 + PGA1_c04260 0.37 +0.1
412,943 + PGA1_c04260 0.39 +1.9
412,961 - PGA1_c04260 0.40 -0.1
413,024 + PGA1_c04260 0.46 -1.5
413,032 - PGA1_c04260 0.47 -0.0
413,116 - PGA1_c04260 0.54 -1.1
413,118 + PGA1_c04260 0.55 +0.2
413,126 - PGA1_c04260 0.55 +0.6
413,133 - PGA1_c04260 0.56 -1.4
413,144 - PGA1_c04260 0.57 -0.1
413,240 - PGA1_c04260 0.66 -0.1
413,284 + PGA1_c04260 0.70 -3.2
413,284 + PGA1_c04260 0.70 -0.4
413,292 - PGA1_c04260 0.70 +0.0
413,292 - PGA1_c04260 0.70 -3.0
413,292 - PGA1_c04260 0.70 +0.6
413,294 + PGA1_c04260 0.70 +1.9
413,302 - PGA1_c04260 0.71 -0.6
413,303 + PGA1_c04260 0.71 +0.2
413,311 - PGA1_c04260 0.72 +0.6
413,324 + PGA1_c04260 0.73 -0.3
413,384 - PGA1_c04260 0.79 -0.0
413,385 - PGA1_c04260 0.79 -1.5
413,395 - PGA1_c04260 0.80 -0.2
413,407 + PGA1_c04260 0.81 +0.4
413,407 + PGA1_c04260 0.81 +1.2
413,429 + PGA1_c04260 0.83 +1.4
413,437 + PGA1_c04260 0.83 -1.4
413,460 + PGA1_c04260 0.85 +0.3
413,486 + PGA1_c04260 0.88 +0.3
413,507 + PGA1_c04260 0.90 +0.6
413,507 + PGA1_c04260 0.90 -2.1
413,507 + PGA1_c04260 0.90 -1.1
413,654 + +1.5
413,654 + +0.6
413,654 + +0.4
413,662 - -1.1
413,662 - +1.2
413,662 - -3.3
413,662 - -1.1
413,710 + +0.1
413,725 + +0.1
413,730 + -0.1
413,733 - +0.2
413,777 - +0.0
413,777 - +0.0
413,848 + -0.3
413,920 - -0.4
413,965 + PGA1_c04270 0.14 -0.9
413,984 - PGA1_c04270 0.17 -0.8
413,987 + PGA1_c04270 0.17 +0.0
413,997 - PGA1_c04270 0.18 +1.3
414,002 - PGA1_c04270 0.19 +0.9
414,002 - PGA1_c04270 0.19 -0.8
414,059 + PGA1_c04270 0.25 -0.5
414,059 + PGA1_c04270 0.25 +0.3
414,060 - PGA1_c04270 0.25 -0.4
414,096 + PGA1_c04270 0.30 -0.3
414,137 + PGA1_c04270 0.34 +0.6
414,150 - PGA1_c04270 0.36 -0.1
414,186 + PGA1_c04270 0.40 +0.7
414,228 - PGA1_c04270 0.45 -0.8
414,230 + PGA1_c04270 0.45 -0.4
414,230 + PGA1_c04270 0.45 -1.3
414,230 + PGA1_c04270 0.45 -0.1
414,230 + PGA1_c04270 0.45 -0.4
414,230 + PGA1_c04270 0.45 -1.6
414,230 + PGA1_c04270 0.45 -2.1
414,230 + PGA1_c04270 0.45 -1.1
414,230 + PGA1_c04270 0.45 -0.1
414,230 + PGA1_c04270 0.45 +0.2
414,230 + PGA1_c04270 0.45 -0.5
414,230 + PGA1_c04270 0.45 +0.9
414,230 + PGA1_c04270 0.45 -0.5
414,230 + PGA1_c04270 0.45 +0.9
414,230 + PGA1_c04270 0.45 -0.6
414,230 + PGA1_c04270 0.45 -1.4
414,230 + PGA1_c04270 0.45 +0.4
414,230 + PGA1_c04270 0.45 -0.4
414,230 + PGA1_c04270 0.45 -0.8
414,238 - PGA1_c04270 0.46 +1.5
414,238 - PGA1_c04270 0.46 -2.3
414,238 - PGA1_c04270 0.46 +0.7
414,238 - PGA1_c04270 0.46 -1.8
414,238 - PGA1_c04270 0.46 -0.4
414,238 - PGA1_c04270 0.46 -1.2
414,238 - PGA1_c04270 0.46 +0.4
414,238 - PGA1_c04270 0.46 -2.1
414,238 - PGA1_c04270 0.46 +1.2
414,238 - PGA1_c04270 0.46 +0.1
414,238 - PGA1_c04270 0.46 -2.1
414,238 - PGA1_c04270 0.46 -0.1
414,238 - PGA1_c04270 0.46 +1.0
414,238 - PGA1_c04270 0.46 -0.9
414,331 + PGA1_c04270 0.57 +0.1
414,347 - PGA1_c04270 0.59 -2.2
414,411 + PGA1_c04270 0.66 -0.6
414,441 + PGA1_c04270 0.70 +0.3
414,452 + PGA1_c04270 0.71 +1.9
414,452 + PGA1_c04270 0.71 -1.9
414,452 + PGA1_c04270 0.71 -0.8
414,460 - PGA1_c04270 0.72 -1.5
414,460 - PGA1_c04270 0.72 +0.2
414,460 - PGA1_c04270 0.72 +0.2
414,473 - PGA1_c04270 0.74 +1.8
414,473 - PGA1_c04270 0.74 -0.3
414,488 - PGA1_c04270 0.75 -0.5
414,531 + PGA1_c04270 0.80 -1.4
414,531 + PGA1_c04270 0.80 -0.5
414,544 - PGA1_c04270 0.82 -2.4
414,544 - PGA1_c04270 0.82 +0.1
414,573 - PGA1_c04270 0.85 -0.9
414,576 - PGA1_c04270 0.86 +0.7
414,734 + -2.5
414,734 + +1.1
414,734 + -1.4
414,734 + -0.3
414,742 - -0.2
414,757 + -0.6
414,762 + +1.1
414,762 + +0.9
414,762 + -1.9
414,765 - +0.4
414,770 - -1.9
414,770 - +0.2
414,770 - +0.3
414,770 - -1.6
414,770 - -0.1
414,770 - +0.6
414,770 - +0.5
414,770 - -0.7
414,792 + PGA1_c04280 0.12 -0.1
414,836 + PGA1_c04280 0.18 +0.8
414,841 + PGA1_c04280 0.18 -0.6
414,842 - PGA1_c04280 0.19 +0.3
414,844 + PGA1_c04280 0.19 +0.4
414,844 + PGA1_c04280 0.19 -1.0
414,850 - PGA1_c04280 0.20 +0.4
414,926 + PGA1_c04280 0.29 -0.4
414,960 + PGA1_c04280 0.34 +2.5
414,960 + PGA1_c04280 0.34 -2.5
414,960 + PGA1_c04280 0.34 -0.3
415,037 + PGA1_c04280 0.44 +1.6
415,037 + PGA1_c04280 0.44 -0.5
415,037 + PGA1_c04280 0.44 -0.3
415,045 - PGA1_c04280 0.45 -0.9
415,078 - PGA1_c04280 0.49 -2.4
415,093 + PGA1_c04280 0.51 -0.1
415,093 + PGA1_c04280 0.51 +0.2
415,101 - PGA1_c04280 0.52 +2.5
415,218 + PGA1_c04280 0.67 +0.5
415,242 - PGA1_c04280 0.70 +0.6
415,291 + PGA1_c04280 0.77 +0.5
415,291 + PGA1_c04280 0.77 +1.7
415,299 - PGA1_c04280 0.78 +0.9
415,387 + PGA1_c04280 0.89 -0.2
415,400 - +0.9
415,435 - +0.9
415,463 + -0.3
415,507 + -3.0
415,507 + +1.5
415,520 - -1.9
415,592 + PGA1_c04290 0.17 -0.5
415,600 - PGA1_c04290 0.18 -0.2
415,679 - PGA1_c04290 0.29 +2.5
415,692 - PGA1_c04290 0.31 -1.5
415,699 + PGA1_c04290 0.32 +0.5

Or see this region's nucleotide sequence