Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04220

Experiment: m.b. Vancomycin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04210 and PGA1_c04220 are separated by 48 nucleotidesPGA1_c04220 and PGA1_c04230 are separated by 43 nucleotidesPGA1_c04230 and PGA1_c04240 are separated by 108 nucleotides PGA1_c04210: PGA1_c04210 - phosphate uptake ABC transporter permease protein PhoT, at 408,516 to 409,886 _c04210 PGA1_c04220: PGA1_c04220 - putative phosphonate metabolism, at 409,935 to 410,549 _c04220 PGA1_c04230: PGA1_c04230 - putative phosphonates metabolism transcriptional regulator phnF, at 410,593 to 411,327 _c04230 PGA1_c04240: PGA1_c04240 - protein PhnG, at 411,436 to 411,912 _c04240 Position (kb) 409 410 411Strain fitness (log2 ratio) -2 -1 0 1 2 3at 408.945 kb on + strand, within PGA1_c04210at 409.062 kb on + strand, within PGA1_c04210at 409.127 kb on - strand, within PGA1_c04210at 409.127 kb on - strand, within PGA1_c04210at 409.132 kb on - strand, within PGA1_c04210at 409.137 kb on - strand, within PGA1_c04210at 409.153 kb on - strand, within PGA1_c04210at 409.215 kb on + strand, within PGA1_c04210at 409.228 kb on - strand, within PGA1_c04210at 409.231 kb on + strand, within PGA1_c04210at 409.244 kb on - strand, within PGA1_c04210at 409.296 kb on + strand, within PGA1_c04210at 409.316 kb on + strand, within PGA1_c04210at 409.354 kb on + strand, within PGA1_c04210at 409.377 kb on - strand, within PGA1_c04210at 409.396 kb on - strand, within PGA1_c04210at 409.417 kb on - strand, within PGA1_c04210at 409.417 kb on - strand, within PGA1_c04210at 409.417 kb on - strand, within PGA1_c04210at 409.422 kb on - strand, within PGA1_c04210at 409.441 kb on + strand, within PGA1_c04210at 409.494 kb on - strand, within PGA1_c04210at 409.570 kb on + strand, within PGA1_c04210at 409.573 kb on - strand, within PGA1_c04210at 409.578 kb on - strand, within PGA1_c04210at 409.588 kb on + strand, within PGA1_c04210at 409.594 kb on + strand, within PGA1_c04210at 409.596 kb on - strand, within PGA1_c04210at 409.596 kb on - strand, within PGA1_c04210at 409.596 kb on - strand, within PGA1_c04210at 409.612 kb on + strand, within PGA1_c04210at 409.681 kb on - strand, within PGA1_c04210at 409.718 kb on + strand, within PGA1_c04210at 409.839 kb on - strandat 409.877 kb on - strandat 409.880 kb on + strandat 409.888 kb on - strandat 409.910 kb on + strandat 409.918 kb on - strandat 409.918 kb on - strandat 409.923 kb on - strandat 409.943 kb on + strandat 409.970 kb on + strandat 410.027 kb on - strand, within PGA1_c04220at 410.027 kb on - strand, within PGA1_c04220at 410.029 kb on + strand, within PGA1_c04220at 410.037 kb on - strand, within PGA1_c04220at 410.108 kb on + strand, within PGA1_c04220at 410.128 kb on - strand, within PGA1_c04220at 410.133 kb on - strand, within PGA1_c04220at 410.159 kb on + strand, within PGA1_c04220at 410.212 kb on + strand, within PGA1_c04220at 410.246 kb on + strand, within PGA1_c04220at 410.254 kb on - strand, within PGA1_c04220at 410.254 kb on - strand, within PGA1_c04220at 410.305 kb on + strand, within PGA1_c04220at 410.305 kb on + strand, within PGA1_c04220at 410.305 kb on + strand, within PGA1_c04220at 410.308 kb on - strand, within PGA1_c04220at 410.317 kb on + strand, within PGA1_c04220at 410.323 kb on + strand, within PGA1_c04220at 410.329 kb on + strand, within PGA1_c04220at 410.385 kb on + strand, within PGA1_c04220at 410.419 kb on + strand, within PGA1_c04220at 410.483 kb on + strand, within PGA1_c04220at 410.491 kb on - strandat 410.496 kb on + strandat 410.518 kb on + strandat 410.549 kb on + strandat 410.557 kb on - strandat 410.559 kb on + strandat 410.572 kb on - strandat 410.631 kb on + strandat 410.639 kb on - strandat 410.639 kb on - strandat 410.639 kb on - strandat 410.657 kb on + strandat 410.706 kb on + strand, within PGA1_c04230at 410.707 kb on - strand, within PGA1_c04230at 410.709 kb on - strand, within PGA1_c04230at 410.768 kb on + strand, within PGA1_c04230at 410.768 kb on - strand, within PGA1_c04230at 410.832 kb on - strand, within PGA1_c04230at 411.003 kb on + strand, within PGA1_c04230at 411.016 kb on + strand, within PGA1_c04230at 411.129 kb on + strand, within PGA1_c04230at 411.129 kb on + strand, within PGA1_c04230at 411.164 kb on - strand, within PGA1_c04230at 411.165 kb on - strand, within PGA1_c04230at 411.184 kb on - strand, within PGA1_c04230at 411.194 kb on + strand, within PGA1_c04230at 411.209 kb on - strand, within PGA1_c04230at 411.268 kb on - strandat 411.361 kb on + strandat 411.361 kb on + strandat 411.361 kb on + strandat 411.369 kb on - strandat 411.369 kb on - strandat 411.369 kb on - strandat 411.424 kb on + strandat 411.424 kb on + strandat 411.432 kb on - strandat 411.433 kb on - strandat 411.452 kb on + strandat 411.486 kb on + strand, within PGA1_c04240at 411.500 kb on - strand, within PGA1_c04240at 411.501 kb on - strand, within PGA1_c04240

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml
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408,945 + PGA1_c04210 0.31 +0.5
409,062 + PGA1_c04210 0.40 -0.2
409,127 - PGA1_c04210 0.45 +2.3
409,127 - PGA1_c04210 0.45 +1.8
409,132 - PGA1_c04210 0.45 -0.7
409,137 - PGA1_c04210 0.45 +0.3
409,153 - PGA1_c04210 0.46 -0.7
409,215 + PGA1_c04210 0.51 +0.2
409,228 - PGA1_c04210 0.52 -0.5
409,231 + PGA1_c04210 0.52 -0.8
409,244 - PGA1_c04210 0.53 +1.5
409,296 + PGA1_c04210 0.57 -0.5
409,316 + PGA1_c04210 0.58 +1.4
409,354 + PGA1_c04210 0.61 -1.5
409,377 - PGA1_c04210 0.63 +2.1
409,396 - PGA1_c04210 0.64 -0.4
409,417 - PGA1_c04210 0.66 +0.0
409,417 - PGA1_c04210 0.66 -1.0
409,417 - PGA1_c04210 0.66 -0.5
409,422 - PGA1_c04210 0.66 -0.5
409,441 + PGA1_c04210 0.67 +0.9
409,494 - PGA1_c04210 0.71 -0.7
409,570 + PGA1_c04210 0.77 -0.2
409,573 - PGA1_c04210 0.77 +0.2
409,578 - PGA1_c04210 0.77 +0.4
409,588 + PGA1_c04210 0.78 -1.6
409,594 + PGA1_c04210 0.79 +1.4
409,596 - PGA1_c04210 0.79 +0.7
409,596 - PGA1_c04210 0.79 -2.6
409,596 - PGA1_c04210 0.79 -0.1
409,612 + PGA1_c04210 0.80 -2.5
409,681 - PGA1_c04210 0.85 -0.1
409,718 + PGA1_c04210 0.88 -1.4
409,839 - +0.5
409,877 - -1.9
409,880 + -1.1
409,888 - -0.3
409,910 + -1.2
409,918 - +0.6
409,918 - -1.1
409,923 - -0.1
409,943 + +2.4
409,970 + -1.3
410,027 - PGA1_c04220 0.15 -0.3
410,027 - PGA1_c04220 0.15 -0.5
410,029 + PGA1_c04220 0.15 -1.2
410,037 - PGA1_c04220 0.17 -0.6
410,108 + PGA1_c04220 0.28 -2.6
410,128 - PGA1_c04220 0.31 -2.3
410,133 - PGA1_c04220 0.32 +0.4
410,159 + PGA1_c04220 0.36 -0.1
410,212 + PGA1_c04220 0.45 -0.4
410,246 + PGA1_c04220 0.51 +0.1
410,254 - PGA1_c04220 0.52 +0.5
410,254 - PGA1_c04220 0.52 -0.6
410,305 + PGA1_c04220 0.60 +1.2
410,305 + PGA1_c04220 0.60 +1.2
410,305 + PGA1_c04220 0.60 -0.2
410,308 - PGA1_c04220 0.61 -0.5
410,317 + PGA1_c04220 0.62 +1.1
410,323 + PGA1_c04220 0.63 -0.6
410,329 + PGA1_c04220 0.64 -1.5
410,385 + PGA1_c04220 0.73 -1.3
410,419 + PGA1_c04220 0.79 -0.2
410,483 + PGA1_c04220 0.89 -0.1
410,491 - +2.9
410,496 + -1.8
410,518 + +1.2
410,549 + -0.7
410,557 - -2.2
410,559 + +0.1
410,572 - -0.5
410,631 + -0.4
410,639 - +0.3
410,639 - -1.4
410,639 - -0.3
410,657 + -0.2
410,706 + PGA1_c04230 0.15 +0.5
410,707 - PGA1_c04230 0.16 -0.6
410,709 - PGA1_c04230 0.16 -0.8
410,768 + PGA1_c04230 0.24 +0.6
410,768 - PGA1_c04230 0.24 -0.4
410,832 - PGA1_c04230 0.33 -0.3
411,003 + PGA1_c04230 0.56 +2.5
411,016 + PGA1_c04230 0.58 +0.2
411,129 + PGA1_c04230 0.73 -0.1
411,129 + PGA1_c04230 0.73 -0.3
411,164 - PGA1_c04230 0.78 -1.4
411,165 - PGA1_c04230 0.78 -1.1
411,184 - PGA1_c04230 0.80 -1.0
411,194 + PGA1_c04230 0.82 +0.7
411,209 - PGA1_c04230 0.84 +0.6
411,268 - -2.1
411,361 + -1.1
411,361 + -0.1
411,361 + +0.4
411,369 - -0.4
411,369 - -0.2
411,369 - -0.1
411,424 + -1.3
411,424 + +1.5
411,432 - +0.7
411,433 - -0.9
411,452 + -2.2
411,486 + PGA1_c04240 0.10 -0.8
411,500 - PGA1_c04240 0.13 -1.9
411,501 - PGA1_c04240 0.14 -0.4

Or see this region's nucleotide sequence