Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c04080 and PGA1_c04090 are separated by 23 nucleotides PGA1_c04090 and PGA1_c04100 are separated by 350 nucleotides
PGA1_c04080: PGA1_c04080 - phenylacetic acid degradation protein PaaA, at 392,580 to 393,557
_c04080
PGA1_c04090: PGA1_c04090 - beta-ketoadipyl-CoA thiolase PaaJ, at 393,581 to 394,783
_c04090
PGA1_c04100: PGA1_c04100 - sulfatase, at 395,134 to 396,780
_c04100
Position (kb) 393
394
395 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 392.656 kb on + strand at 392.663 kb on - strand at 392.664 kb on - strand at 392.675 kb on + strand at 392.677 kb on + strand at 392.685 kb on - strand, within PGA1_c04080 at 392.701 kb on + strand, within PGA1_c04080 at 392.715 kb on - strand, within PGA1_c04080 at 392.804 kb on + strand, within PGA1_c04080 at 392.810 kb on + strand, within PGA1_c04080 at 392.852 kb on - strand, within PGA1_c04080 at 392.874 kb on - strand, within PGA1_c04080 at 392.902 kb on + strand, within PGA1_c04080 at 392.924 kb on - strand, within PGA1_c04080 at 393.008 kb on - strand, within PGA1_c04080 at 393.025 kb on + strand, within PGA1_c04080 at 393.096 kb on - strand, within PGA1_c04080 at 393.136 kb on + strand, within PGA1_c04080 at 393.169 kb on + strand, within PGA1_c04080 at 393.262 kb on - strand, within PGA1_c04080 at 393.271 kb on + strand, within PGA1_c04080 at 393.271 kb on + strand, within PGA1_c04080 at 393.271 kb on + strand, within PGA1_c04080 at 393.271 kb on + strand, within PGA1_c04080 at 393.279 kb on - strand, within PGA1_c04080 at 393.281 kb on + strand, within PGA1_c04080 at 393.282 kb on + strand, within PGA1_c04080 at 393.289 kb on - strand, within PGA1_c04080 at 393.298 kb on + strand, within PGA1_c04080 at 393.306 kb on - strand, within PGA1_c04080 at 393.306 kb on - strand, within PGA1_c04080 at 393.366 kb on + strand, within PGA1_c04080 at 393.375 kb on - strand, within PGA1_c04080 at 393.420 kb on + strand, within PGA1_c04080 at 393.420 kb on + strand, within PGA1_c04080 at 393.468 kb on + strand at 393.476 kb on - strand at 393.509 kb on + strand at 393.519 kb on + strand at 393.527 kb on - strand at 393.569 kb on + strand at 393.577 kb on - strand at 393.588 kb on + strand at 393.596 kb on + strand at 393.719 kb on + strand, within PGA1_c04090 at 393.724 kb on + strand, within PGA1_c04090 at 393.759 kb on - strand, within PGA1_c04090 at 393.856 kb on - strand, within PGA1_c04090 at 393.863 kb on + strand, within PGA1_c04090 at 393.863 kb on + strand, within PGA1_c04090 at 393.863 kb on + strand, within PGA1_c04090 at 393.871 kb on - strand, within PGA1_c04090 at 393.871 kb on - strand, within PGA1_c04090 at 393.913 kb on + strand, within PGA1_c04090 at 393.921 kb on - strand, within PGA1_c04090 at 393.956 kb on + strand, within PGA1_c04090 at 394.011 kb on - strand, within PGA1_c04090 at 394.076 kb on - strand, within PGA1_c04090 at 394.133 kb on - strand, within PGA1_c04090 at 394.143 kb on + strand, within PGA1_c04090 at 394.143 kb on + strand, within PGA1_c04090 at 394.151 kb on - strand, within PGA1_c04090 at 394.153 kb on + strand, within PGA1_c04090 at 394.193 kb on + strand, within PGA1_c04090 at 394.230 kb on - strand, within PGA1_c04090 at 394.262 kb on + strand, within PGA1_c04090 at 394.280 kb on + strand, within PGA1_c04090 at 394.280 kb on + strand, within PGA1_c04090 at 394.361 kb on + strand, within PGA1_c04090 at 394.361 kb on + strand, within PGA1_c04090 at 394.361 kb on + strand, within PGA1_c04090 at 394.369 kb on - strand, within PGA1_c04090 at 394.382 kb on + strand, within PGA1_c04090 at 394.396 kb on - strand, within PGA1_c04090 at 394.417 kb on - strand, within PGA1_c04090 at 394.424 kb on + strand, within PGA1_c04090 at 394.465 kb on + strand, within PGA1_c04090 at 394.548 kb on + strand, within PGA1_c04090 at 394.636 kb on + strand, within PGA1_c04090 at 394.650 kb on - strand, within PGA1_c04090 at 394.650 kb on - strand, within PGA1_c04090 at 394.702 kb on + strand at 394.702 kb on + strand at 394.710 kb on + strand at 394.718 kb on - strand at 394.850 kb on - strand at 394.868 kb on + strand at 394.906 kb on + strand at 394.944 kb on + strand at 394.944 kb on + strand at 394.949 kb on + strand at 394.949 kb on + strand at 394.949 kb on + strand at 394.949 kb on + strand at 394.949 kb on + strand at 394.949 kb on + strand at 394.949 kb on + strand at 394.957 kb on - strand at 394.957 kb on - strand at 394.957 kb on - strand at 395.043 kb on + strand at 395.049 kb on + strand at 395.049 kb on + strand at 395.049 kb on + strand at 395.051 kb on - strand at 395.055 kb on - strand at 395.057 kb on - strand at 395.062 kb on + strand at 395.062 kb on + strand at 395.062 kb on + strand at 395.062 kb on + strand at 395.062 kb on + strand at 395.062 kb on - strand at 395.070 kb on - strand at 395.070 kb on - strand at 395.070 kb on - strand at 395.096 kb on + strand at 395.148 kb on + strand at 395.176 kb on + strand at 395.183 kb on + strand at 395.184 kb on - strand at 395.200 kb on + strand at 395.202 kb on + strand at 395.208 kb on - strand at 395.225 kb on + strand at 395.258 kb on + strand at 395.266 kb on - strand at 395.266 kb on - strand at 395.276 kb on + strand at 395.285 kb on - strand at 395.298 kb on + strand at 395.316 kb on - strand, within PGA1_c04100 at 395.318 kb on + strand, within PGA1_c04100 at 395.345 kb on - strand, within PGA1_c04100 at 395.348 kb on + strand, within PGA1_c04100 at 395.363 kb on - strand, within PGA1_c04100 at 395.365 kb on - strand, within PGA1_c04100 at 395.378 kb on - strand, within PGA1_c04100 at 395.378 kb on - strand, within PGA1_c04100 at 395.388 kb on + strand, within PGA1_c04100 at 395.391 kb on - strand, within PGA1_c04100 at 395.395 kb on + strand, within PGA1_c04100 at 395.395 kb on + strand, within PGA1_c04100 at 395.427 kb on - strand, within PGA1_c04100 at 395.434 kb on - strand, within PGA1_c04100 at 395.449 kb on + strand, within PGA1_c04100 at 395.457 kb on - strand, within PGA1_c04100 at 395.467 kb on - strand, within PGA1_c04100 at 395.467 kb on - strand, within PGA1_c04100 at 395.470 kb on + strand, within PGA1_c04100 at 395.538 kb on + strand, within PGA1_c04100 at 395.546 kb on - strand, within PGA1_c04100 at 395.561 kb on - strand, within PGA1_c04100 at 395.561 kb on - strand, within PGA1_c04100 at 395.577 kb on + strand, within PGA1_c04100 at 395.577 kb on + strand, within PGA1_c04100 at 395.585 kb on - strand, within PGA1_c04100 at 395.605 kb on + strand, within PGA1_c04100 at 395.610 kb on + strand, within PGA1_c04100 at 395.615 kb on + strand, within PGA1_c04100 at 395.628 kb on + strand, within PGA1_c04100 at 395.628 kb on + strand, within PGA1_c04100 at 395.628 kb on + strand, within PGA1_c04100 at 395.636 kb on - strand, within PGA1_c04100 at 395.636 kb on - strand, within PGA1_c04100 at 395.691 kb on + strand, within PGA1_c04100 at 395.708 kb on - strand, within PGA1_c04100 at 395.722 kb on + strand, within PGA1_c04100 at 395.740 kb on - strand, within PGA1_c04100
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 392,656 + +0.6 392,663 - +0.6 392,664 - +0.2 392,675 + -0.6 392,677 + +1.6 392,685 - PGA1_c04080 0.11 -1.1 392,701 + PGA1_c04080 0.12 -0.2 392,715 - PGA1_c04080 0.14 +1.2 392,804 + PGA1_c04080 0.23 -0.3 392,810 + PGA1_c04080 0.24 -0.3 392,852 - PGA1_c04080 0.28 +0.0 392,874 - PGA1_c04080 0.30 -1.6 392,902 + PGA1_c04080 0.33 -1.0 392,924 - PGA1_c04080 0.35 -0.3 393,008 - PGA1_c04080 0.44 -1.1 393,025 + PGA1_c04080 0.46 -0.8 393,096 - PGA1_c04080 0.53 -0.1 393,136 + PGA1_c04080 0.57 -1.9 393,169 + PGA1_c04080 0.60 +0.2 393,262 - PGA1_c04080 0.70 -1.1 393,271 + PGA1_c04080 0.71 +0.9 393,271 + PGA1_c04080 0.71 +0.0 393,271 + PGA1_c04080 0.71 +1.8 393,271 + PGA1_c04080 0.71 +0.3 393,279 - PGA1_c04080 0.71 +0.1 393,281 + PGA1_c04080 0.72 -2.2 393,282 + PGA1_c04080 0.72 -0.6 393,289 - PGA1_c04080 0.72 -0.2 393,298 + PGA1_c04080 0.73 -0.6 393,306 - PGA1_c04080 0.74 +0.2 393,306 - PGA1_c04080 0.74 -2.8 393,366 + PGA1_c04080 0.80 +0.1 393,375 - PGA1_c04080 0.81 +0.1 393,420 + PGA1_c04080 0.86 -0.3 393,420 + PGA1_c04080 0.86 -2.5 393,468 + +0.3 393,476 - +0.0 393,509 + -0.7 393,519 + +1.8 393,527 - +0.2 393,569 + -0.1 393,577 - +0.1 393,588 + -0.1 393,596 + -1.4 393,719 + PGA1_c04090 0.11 -3.6 393,724 + PGA1_c04090 0.12 -1.8 393,759 - PGA1_c04090 0.15 -0.6 393,856 - PGA1_c04090 0.23 +3.3 393,863 + PGA1_c04090 0.23 -1.4 393,863 + PGA1_c04090 0.23 -0.1 393,863 + PGA1_c04090 0.23 -2.0 393,871 - PGA1_c04090 0.24 -0.3 393,871 - PGA1_c04090 0.24 +0.3 393,913 + PGA1_c04090 0.28 -3.5 393,921 - PGA1_c04090 0.28 -0.6 393,956 + PGA1_c04090 0.31 -1.1 394,011 - PGA1_c04090 0.36 -0.4 394,076 - PGA1_c04090 0.41 -3.9 394,133 - PGA1_c04090 0.46 -2.1 394,143 + PGA1_c04090 0.47 -1.1 394,143 + PGA1_c04090 0.47 -0.6 394,151 - PGA1_c04090 0.47 -0.9 394,153 + PGA1_c04090 0.48 -2.2 394,193 + PGA1_c04090 0.51 -2.0 394,230 - PGA1_c04090 0.54 -1.9 394,262 + PGA1_c04090 0.57 -0.6 394,280 + PGA1_c04090 0.58 +0.4 394,280 + PGA1_c04090 0.58 -0.8 394,361 + PGA1_c04090 0.65 -1.0 394,361 + PGA1_c04090 0.65 +0.1 394,361 + PGA1_c04090 0.65 +1.0 394,369 - PGA1_c04090 0.66 +0.0 394,382 + PGA1_c04090 0.67 -0.5 394,396 - PGA1_c04090 0.68 -1.4 394,417 - PGA1_c04090 0.69 -0.9 394,424 + PGA1_c04090 0.70 -0.3 394,465 + PGA1_c04090 0.73 +0.8 394,548 + PGA1_c04090 0.80 +0.1 394,636 + PGA1_c04090 0.88 -0.3 394,650 - PGA1_c04090 0.89 +0.2 394,650 - PGA1_c04090 0.89 -0.1 394,702 + +1.1 394,702 + -1.4 394,710 + -1.9 394,718 - -1.9 394,850 - +0.2 394,868 + -0.1 394,906 + -0.6 394,944 + -0.6 394,944 + +0.3 394,949 + -0.5 394,949 + +0.4 394,949 + -0.3 394,949 + +0.5 394,949 + -0.4 394,949 + -0.2 394,949 + +0.3 394,957 - +0.6 394,957 - +3.9 394,957 - -2.4 395,043 + -0.5 395,049 + -1.1 395,049 + -1.0 395,049 + -1.3 395,051 - -0.6 395,055 - -0.6 395,057 - -0.9 395,062 + +1.1 395,062 + +0.5 395,062 + +0.9 395,062 + -2.0 395,062 + -1.1 395,062 - -0.6 395,070 - +0.7 395,070 - +0.1 395,070 - -0.1 395,096 + +2.3 395,148 + +2.7 395,176 + +1.9 395,183 + -0.1 395,184 - +1.1 395,200 + +2.1 395,202 + -0.2 395,208 - +0.6 395,225 + +0.2 395,258 + -0.2 395,266 - -0.8 395,266 - +0.2 395,276 + -1.2 395,285 - +0.6 395,298 + -1.4 395,316 - PGA1_c04100 0.11 +1.5 395,318 + PGA1_c04100 0.11 -0.2 395,345 - PGA1_c04100 0.13 -0.6 395,348 + PGA1_c04100 0.13 -2.4 395,363 - PGA1_c04100 0.14 +1.0 395,365 - PGA1_c04100 0.14 -0.1 395,378 - PGA1_c04100 0.15 -2.3 395,378 - PGA1_c04100 0.15 -0.7 395,388 + PGA1_c04100 0.15 +0.7 395,391 - PGA1_c04100 0.16 -0.9 395,395 + PGA1_c04100 0.16 -1.6 395,395 + PGA1_c04100 0.16 -1.7 395,427 - PGA1_c04100 0.18 -0.8 395,434 - PGA1_c04100 0.18 +0.0 395,449 + PGA1_c04100 0.19 +0.8 395,457 - PGA1_c04100 0.20 -0.8 395,467 - PGA1_c04100 0.20 -0.3 395,467 - PGA1_c04100 0.20 -0.6 395,470 + PGA1_c04100 0.20 +0.6 395,538 + PGA1_c04100 0.25 +0.0 395,546 - PGA1_c04100 0.25 +0.5 395,561 - PGA1_c04100 0.26 -3.5 395,561 - PGA1_c04100 0.26 +0.5 395,577 + PGA1_c04100 0.27 +0.5 395,577 + PGA1_c04100 0.27 -1.2 395,585 - PGA1_c04100 0.27 -0.9 395,605 + PGA1_c04100 0.29 -1.1 395,610 + PGA1_c04100 0.29 -0.1 395,615 + PGA1_c04100 0.29 -0.4 395,628 + PGA1_c04100 0.30 -0.1 395,628 + PGA1_c04100 0.30 +0.7 395,628 + PGA1_c04100 0.30 +0.5 395,636 - PGA1_c04100 0.30 -1.6 395,636 - PGA1_c04100 0.30 -0.6 395,691 + PGA1_c04100 0.34 -0.2 395,708 - PGA1_c04100 0.35 -1.3 395,722 + PGA1_c04100 0.36 +0.5 395,740 - PGA1_c04100 0.37 +1.1
Or see this region's nucleotide sequence