Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01590 and PGA1_262p01600 are separated by 6 nucleotides PGA1_262p01600 and PGA1_262p01610 overlap by 4 nucleotides PGA1_262p01610 and PGA1_262p01620 are separated by 27 nucleotides PGA1_262p01620 and PGA1_262p01630 are separated by 68 nucleotides
PGA1_262p01590: PGA1_262p01590 - Protein of unknown function (DUF2796)., at 176,259 to 176,930
_262p01590
PGA1_262p01600: PGA1_262p01600 - putative ABC transporter, ATP binding protein, at 176,937 to 177,632
_262p01600
PGA1_262p01610: PGA1_262p01610 - putative ABC transporter, permease protein, at 177,629 to 178,879
_262p01610
PGA1_262p01620: PGA1_262p01620 - Uncharacterized protein conserved in bacteria, at 178,907 to 179,407
_262p01620
PGA1_262p01630: PGA1_262p01630 - hypothetical protein, at 179,476 to 179,721
_262p01630
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 176.640 kb on - strand, within PGA1_262p01590 at 176.777 kb on - strand, within PGA1_262p01590 at 176.851 kb on + strand, within PGA1_262p01590 at 176.937 kb on - strand at 176.939 kb on - strand at 177.189 kb on + strand, within PGA1_262p01600 at 177.376 kb on + strand, within PGA1_262p01600 at 177.430 kb on - strand, within PGA1_262p01600 at 177.461 kb on - strand, within PGA1_262p01600 at 177.527 kb on - strand, within PGA1_262p01600 at 177.667 kb on + strand at 177.681 kb on + strand at 177.747 kb on + strand at 177.805 kb on + strand, within PGA1_262p01610 at 177.810 kb on + strand, within PGA1_262p01610 at 177.810 kb on + strand, within PGA1_262p01610 at 177.818 kb on - strand, within PGA1_262p01610 at 177.826 kb on + strand, within PGA1_262p01610 at 177.834 kb on - strand, within PGA1_262p01610 at 177.834 kb on - strand, within PGA1_262p01610 at 177.869 kb on + strand, within PGA1_262p01610 at 178.136 kb on - strand, within PGA1_262p01610 at 178.214 kb on + strand, within PGA1_262p01610 at 178.343 kb on + strand, within PGA1_262p01610 at 178.606 kb on + strand, within PGA1_262p01610 at 178.664 kb on - strand, within PGA1_262p01610 at 178.715 kb on + strand, within PGA1_262p01610 at 178.755 kb on + strand at 178.755 kb on + strand at 178.758 kb on - strand at 178.763 kb on - strand at 178.881 kb on + strand at 178.894 kb on - strand at 178.947 kb on - strand at 179.050 kb on - strand, within PGA1_262p01620 at 179.253 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.310 kb on + strand, within PGA1_262p01620 at 179.461 kb on + strand at 179.469 kb on - strand at 179.509 kb on + strand, within PGA1_262p01630 at 179.570 kb on + strand, within PGA1_262p01630 at 179.574 kb on - strand, within PGA1_262p01630 at 179.651 kb on + strand, within PGA1_262p01630 at 179.651 kb on + strand, within PGA1_262p01630 at 179.713 kb on + strand at 179.750 kb on - strand at 179.750 kb on - strand at 179.795 kb on + strand at 179.796 kb on + strand at 179.798 kb on - strand at 179.806 kb on + strand at 179.836 kb on + strand at 179.836 kb on - strand at 179.844 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 176,640 - PGA1_262p01590 0.57 +1.2 176,777 - PGA1_262p01590 0.77 +0.3 176,851 + PGA1_262p01590 0.88 -1.4 176,937 - -0.5 176,939 - +1.3 177,189 + PGA1_262p01600 0.36 -0.5 177,376 + PGA1_262p01600 0.63 -0.0 177,430 - PGA1_262p01600 0.71 +3.5 177,461 - PGA1_262p01600 0.75 +0.1 177,527 - PGA1_262p01600 0.85 +1.6 177,667 + +1.2 177,681 + -1.4 177,747 + +1.0 177,805 + PGA1_262p01610 0.14 -0.6 177,810 + PGA1_262p01610 0.14 -0.9 177,810 + PGA1_262p01610 0.14 -0.6 177,818 - PGA1_262p01610 0.15 -0.2 177,826 + PGA1_262p01610 0.16 -1.0 177,834 - PGA1_262p01610 0.16 -1.7 177,834 - PGA1_262p01610 0.16 -1.5 177,869 + PGA1_262p01610 0.19 +1.4 178,136 - PGA1_262p01610 0.41 +0.5 178,214 + PGA1_262p01610 0.47 +0.2 178,343 + PGA1_262p01610 0.57 -0.2 178,606 + PGA1_262p01610 0.78 -2.2 178,664 - PGA1_262p01610 0.83 -2.6 178,715 + PGA1_262p01610 0.87 -1.1 178,755 + -1.8 178,755 + -0.6 178,758 - -0.6 178,763 - -0.7 178,881 + -0.2 178,894 - +2.1 178,947 - -0.9 179,050 - PGA1_262p01620 0.29 +0.8 179,253 + PGA1_262p01620 0.69 +0.5 179,310 + PGA1_262p01620 0.80 -0.8 179,310 + PGA1_262p01620 0.80 +1.2 179,310 + PGA1_262p01620 0.80 -1.2 179,461 + +0.4 179,469 - -0.2 179,509 + PGA1_262p01630 0.13 +0.2 179,570 + PGA1_262p01630 0.38 -1.4 179,574 - PGA1_262p01630 0.40 +0.6 179,651 + PGA1_262p01630 0.71 +0.3 179,651 + PGA1_262p01630 0.71 -0.7 179,713 + -0.9 179,750 - +0.4 179,750 - -1.4 179,795 + -1.2 179,796 + -0.2 179,798 - -0.0 179,806 + +3.1 179,836 + -0.2 179,836 - +0.5 179,844 - +1.8
Or see this region's nucleotide sequence