Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c36490 and PGA1_c36500 are separated by 64 nucleotides PGA1_c36500 and PGA1_c36510 are separated by 287 nucleotides
PGA1_c36490: PGA1_c36490 - formamidopyrimidine-DNA glycosylase MutM, at 3,819,094 to 3,819,945
_c36490
PGA1_c36500: PGA1_c36500 - enoyl-CoA hydratase/isomerase, at 3,820,010 to 3,820,786
_c36500
PGA1_c36510: PGA1_c36510 - 30S ribosomal protein S20, at 3,821,074 to 3,821,337
_c36510
Position (kb)
3820
3821 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3819.026 kb on - strand at 3819.041 kb on + strand at 3819.108 kb on - strand at 3819.200 kb on - strand, within PGA1_c36490 at 3819.200 kb on - strand, within PGA1_c36490 at 3819.280 kb on + strand, within PGA1_c36490 at 3819.288 kb on - strand, within PGA1_c36490 at 3819.349 kb on + strand, within PGA1_c36490 at 3819.357 kb on - strand, within PGA1_c36490 at 3819.372 kb on + strand, within PGA1_c36490 at 3819.424 kb on - strand, within PGA1_c36490 at 3819.471 kb on + strand, within PGA1_c36490 at 3819.493 kb on - strand, within PGA1_c36490 at 3819.493 kb on - strand, within PGA1_c36490 at 3819.503 kb on - strand, within PGA1_c36490 at 3819.526 kb on - strand, within PGA1_c36490 at 3819.681 kb on + strand, within PGA1_c36490 at 3819.689 kb on - strand, within PGA1_c36490 at 3819.689 kb on - strand, within PGA1_c36490 at 3819.689 kb on - strand, within PGA1_c36490 at 3819.689 kb on - strand, within PGA1_c36490 at 3819.691 kb on + strand, within PGA1_c36490 at 3819.694 kb on - strand, within PGA1_c36490 at 3819.694 kb on - strand, within PGA1_c36490 at 3819.695 kb on - strand, within PGA1_c36490 at 3819.711 kb on + strand, within PGA1_c36490 at 3819.732 kb on - strand, within PGA1_c36490 at 3819.740 kb on - strand, within PGA1_c36490 at 3819.770 kb on + strand, within PGA1_c36490 at 3819.770 kb on + strand, within PGA1_c36490 at 3819.827 kb on + strand, within PGA1_c36490 at 3819.835 kb on - strand, within PGA1_c36490 at 3819.835 kb on - strand, within PGA1_c36490 at 3819.835 kb on - strand, within PGA1_c36490 at 3819.857 kb on - strand, within PGA1_c36490 at 3819.858 kb on - strand, within PGA1_c36490 at 3819.914 kb on + strand at 3819.914 kb on + strand at 3819.922 kb on - strand at 3820.015 kb on - strand at 3820.787 kb on + strand at 3820.799 kb on - strand at 3820.815 kb on - strand at 3820.815 kb on - strand at 3820.826 kb on + strand at 3820.873 kb on + strand at 3820.886 kb on - strand at 3820.899 kb on - strand at 3820.925 kb on + strand at 3821.390 kb on + strand at 3821.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 3,819,026 - -1.3 3,819,041 + -0.6 3,819,108 - -0.6 3,819,200 - PGA1_c36490 0.12 -1.5 3,819,200 - PGA1_c36490 0.12 -0.9 3,819,280 + PGA1_c36490 0.22 -0.2 3,819,288 - PGA1_c36490 0.23 -1.3 3,819,349 + PGA1_c36490 0.30 +3.8 3,819,357 - PGA1_c36490 0.31 +1.8 3,819,372 + PGA1_c36490 0.33 -0.1 3,819,424 - PGA1_c36490 0.39 -0.1 3,819,471 + PGA1_c36490 0.44 +1.1 3,819,493 - PGA1_c36490 0.47 -0.9 3,819,493 - PGA1_c36490 0.47 -1.5 3,819,503 - PGA1_c36490 0.48 +0.1 3,819,526 - PGA1_c36490 0.51 -3.5 3,819,681 + PGA1_c36490 0.69 -1.2 3,819,689 - PGA1_c36490 0.70 +0.6 3,819,689 - PGA1_c36490 0.70 +1.3 3,819,689 - PGA1_c36490 0.70 -0.1 3,819,689 - PGA1_c36490 0.70 +1.6 3,819,691 + PGA1_c36490 0.70 -0.3 3,819,694 - PGA1_c36490 0.70 -1.4 3,819,694 - PGA1_c36490 0.70 -1.0 3,819,695 - PGA1_c36490 0.71 +1.8 3,819,711 + PGA1_c36490 0.72 +0.1 3,819,732 - PGA1_c36490 0.75 -2.3 3,819,740 - PGA1_c36490 0.76 +0.2 3,819,770 + PGA1_c36490 0.79 -1.5 3,819,770 + PGA1_c36490 0.79 -1.5 3,819,827 + PGA1_c36490 0.86 -0.9 3,819,835 - PGA1_c36490 0.87 +0.8 3,819,835 - PGA1_c36490 0.87 -0.2 3,819,835 - PGA1_c36490 0.87 -0.9 3,819,857 - PGA1_c36490 0.90 +0.6 3,819,858 - PGA1_c36490 0.90 +0.5 3,819,914 + -0.6 3,819,914 + +0.9 3,819,922 - -2.3 3,820,015 - +0.5 3,820,787 + -2.1 3,820,799 - -1.8 3,820,815 - +1.3 3,820,815 - -2.1 3,820,826 + +1.2 3,820,873 + +1.2 3,820,886 - -1.5 3,820,899 - +1.5 3,820,925 + -0.6 3,821,390 + -0.2 3,821,478 - -0.8
Or see this region's nucleotide sequence