Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35800

Experiment: m.b. Vancomycin 0.032 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Vancomycin 0.032 mg/ml
3,750,581	-		PGA1_c35780	0.65	-0.9
3,750,594	+		PGA1_c35780	0.67	+0.6
3,750,602	-		PGA1_c35780	0.68	+1.1
3,750,604	+		PGA1_c35780	0.68	+1.0
3,750,649	-		PGA1_c35780	0.74	-2.5
3,750,653	+		PGA1_c35780	0.74	-0.0
3,750,656	+		PGA1_c35780	0.75	+1.6
3,750,661	+		PGA1_c35780	0.75	-1.0
3,750,661	+		PGA1_c35780	0.75	-1.1
3,750,661	+		PGA1_c35780	0.75	+0.1
3,750,663	+		PGA1_c35780	0.76	-1.5
3,750,671	+		PGA1_c35780	0.77	+0.5
3,750,674	-		PGA1_c35780	0.77	+0.6
3,750,679	-		PGA1_c35780	0.78	-1.9
3,750,680	+		PGA1_c35780	0.78	+0.8
3,750,689	+		PGA1_c35780	0.79	-0.8
3,750,697	+		PGA1_c35780	0.80	+0.5
3,750,697	+		PGA1_c35780	0.80	-0.5
3,750,697	+		PGA1_c35780	0.80	-1.5
3,750,697	-		PGA1_c35780	0.80	-0.8
3,750,705	-		PGA1_c35780	0.81	-2.1
3,750,705	-		PGA1_c35780	0.81	-2.4
3,750,706	+		PGA1_c35780	0.81	+0.8
3,750,723	+		PGA1_c35780	0.83	-0.9
3,750,759	-		PGA1_c35780	0.88	-0.1
3,750,762	-		PGA1_c35780	0.88	+0.3
3,750,766	+		PGA1_c35780	0.89	-3.5
3,750,766	+		PGA1_c35780	0.89	+0.8
3,750,766	+		PGA1_c35780	0.89	+1.0
3,750,766	+		PGA1_c35780	0.89	-1.1
3,750,768	-		PGA1_c35780	0.89	-1.1
3,750,853	-				-1.1
3,750,856	+				-1.7
3,750,864	-				-2.7
3,750,864	-				-0.8
3,750,864	-				-1.8
3,750,906	+				-0.4
3,750,925	+				-1.3
3,750,933	-				-0.5
3,750,983	+		PGA1_c35790	0.16	-2.3
3,750,990	+		PGA1_c35790	0.17	-0.9
3,750,990	+		PGA1_c35790	0.17	-1.6
3,750,990	+		PGA1_c35790	0.17	-0.7
3,750,991	-		PGA1_c35790	0.18	-1.5
3,751,000	+		PGA1_c35790	0.19	-3.8
3,751,009	+		PGA1_c35790	0.20	-1.9
3,751,009	+		PGA1_c35790	0.20	-0.9
3,751,017	-		PGA1_c35790	0.21	-1.4
3,751,017	-		PGA1_c35790	0.21	+0.1
3,751,017	-		PGA1_c35790	0.21	-1.9
3,751,017	-		PGA1_c35790	0.21	-0.6
3,751,032	-		PGA1_c35790	0.23	-1.4
3,751,060	+		PGA1_c35790	0.27	+0.3
3,751,060	+		PGA1_c35790	0.27	-0.6
3,751,060	+		PGA1_c35790	0.27	-3.9
3,751,060	+		PGA1_c35790	0.27	-0.9
3,751,062	+		PGA1_c35790	0.27	-1.3
3,751,068	-		PGA1_c35790	0.28	-2.9
3,751,068	-		PGA1_c35790	0.28	-0.4
3,751,070	-		PGA1_c35790	0.29	-0.8
3,751,145	-		PGA1_c35790	0.39	-2.6
3,751,195	+		PGA1_c35790	0.46	+0.5
3,751,195	-		PGA1_c35790	0.46	-1.7
3,751,203	-		PGA1_c35790	0.47	-0.7
3,751,253	+		PGA1_c35790	0.54	-2.1
3,751,253	+		PGA1_c35790	0.54	-3.1
3,751,293	-		PGA1_c35790	0.60	-3.0
3,751,307	-		PGA1_c35790	0.62	+1.8
3,751,344	+		PGA1_c35790	0.67	+0.9
3,751,344	+		PGA1_c35790	0.67	-0.5
3,751,345	+		PGA1_c35790	0.67	-2.3
3,751,345	+		PGA1_c35790	0.67	-1.8
3,751,345	+		PGA1_c35790	0.67	+0.7
3,751,353	-		PGA1_c35790	0.68	+1.7
3,751,353	-		PGA1_c35790	0.68	-1.8
3,751,353	-		PGA1_c35790	0.68	-0.8
3,751,353	-		PGA1_c35790	0.68	-0.5
3,751,353	-		PGA1_c35790	0.68	-1.5
3,751,374	-		PGA1_c35790	0.71	+0.6
3,751,374	-		PGA1_c35790	0.71	+0.9
3,751,374	-		PGA1_c35790	0.71	-0.8
3,751,431	-		PGA1_c35790	0.79	-2.3
3,751,446	+		PGA1_c35790	0.81	+0.5
3,751,446	+		PGA1_c35790	0.81	-1.8
3,751,470	-		PGA1_c35790	0.84	-0.9
3,751,479	+		PGA1_c35790	0.86	-2.4
3,751,482	+		PGA1_c35790	0.86	+0.1
3,751,542	-				+0.6
3,751,542	-				+3.5
3,751,542	-				-1.4
3,751,542	-				+1.1
3,751,542	-				-1.5
3,751,542	-				-0.7
3,751,560	-				-1.9
3,751,565	-				-1.6
3,751,569	-				+0.6
3,751,578	+				+0.1
3,751,581	+				-0.9
3,751,591	+				+0.1
3,751,607	+				+0.5
3,751,630	+		PGA1_c35800	0.18	-0.9
3,751,638	-		PGA1_c35800	0.21	-0.0
3,751,651	+		PGA1_c35800	0.26	-3.1
3,751,696	+		PGA1_c35800	0.42	-1.9
3,751,696	-		PGA1_c35800	0.42	-0.5
3,751,709	-		PGA1_c35800	0.47	-4.0
3,751,732	+		PGA1_c35800	0.55	+0.8
3,751,732	+		PGA1_c35800	0.55	-1.3
3,751,732	+		PGA1_c35800	0.55	-3.5
3,751,742	+		PGA1_c35800	0.59	-1.5
3,751,888	+		PGA1_c35810	0.10	-0.4
3,751,897	-		PGA1_c35810	0.13	-0.2
3,751,944	+		PGA1_c35810	0.29	-0.8
3,751,960	-		PGA1_c35810	0.34	+1.0
3,752,005	-		PGA1_c35810	0.49	-3.6
3,752,061	+		PGA1_c35810	0.68	-0.8
3,752,061	+		PGA1_c35810	0.68	-0.6
3,752,061	+		PGA1_c35810	0.68	-0.2
3,752,095	-		PGA1_c35810	0.80	+2.0
3,752,095	-		PGA1_c35810	0.80	-1.3
3,752,121	+		PGA1_c35810	0.89	-2.6
3,752,131	+				+0.6
3,752,134	+				+0.7
3,752,254	+		PGA1_c35820	0.14	-0.9
3,752,254	-		PGA1_c35820	0.14	-0.5
3,752,277	+		PGA1_c35820	0.20	-1.1
3,752,285	-		PGA1_c35820	0.22	-1.4
3,752,360	+		PGA1_c35820	0.41	-2.1
3,752,395	-		PGA1_c35820	0.50	-2.3
3,752,395	-		PGA1_c35820	0.50	-1.8
3,752,395	-		PGA1_c35820	0.50	+0.9
3,752,397	+		PGA1_c35820	0.50	-2.8
3,752,413	-		PGA1_c35820	0.54	+0.1
3,752,416	+		PGA1_c35820	0.55	-0.3
3,752,418	-		PGA1_c35820	0.56	-1.7
3,752,455	+		PGA1_c35820	0.65	-2.6
3,752,456	+		PGA1_c35820	0.65	-2.9
3,752,470	+		PGA1_c35820	0.69	+0.5
3,752,472	-		PGA1_c35820	0.69	-1.9
3,752,483	+		PGA1_c35820	0.72	-0.9
3,752,483	+		PGA1_c35820	0.72	-4.1
3,752,483	+		PGA1_c35820	0.72	-0.1
3,752,483	+		PGA1_c35820	0.72	+1.5
3,752,483	+		PGA1_c35820	0.72	+0.1
3,752,486	-		PGA1_c35820	0.73	-1.0
3,752,491	-		PGA1_c35820	0.74	-3.5
3,752,491	-		PGA1_c35820	0.74	+0.1
3,752,543	-		PGA1_c35820	0.88	-1.3
3,752,543	-		PGA1_c35820	0.88	+0.2
3,752,602	+				+1.7
3,752,602	+				-0.9
3,752,602	+				-0.3
3,752,610	-				-0.8
3,752,610	-				-0.9
3,752,610	-				-1.8
3,752,617	+				+0.1
3,752,620	-				-0.3
3,752,620	-				+1.6
3,752,625	+				-2.6
3,752,633	-				-0.1
3,752,684	+		PGA1_c35830	0.21	-0.2
3,752,684	+		PGA1_c35830	0.21	-0.6
3,752,692	-		PGA1_c35830	0.23	+1.6
3,752,692	-		PGA1_c35830	0.23	-1.5
3,752,722	+		PGA1_c35830	0.30	-0.4
3,752,764	+		PGA1_c35830	0.41	+0.1
3,752,769	+		PGA1_c35830	0.42	-0.6
3,752,769	+		PGA1_c35830	0.42	+0.1
3,752,769	+		PGA1_c35830	0.42	-1.8
3,752,769	+		PGA1_c35830	0.42	-2.1
3,752,772	-		PGA1_c35830	0.43	-1.8
3,752,772	-		PGA1_c35830	0.43	-1.9
3,752,772	-		PGA1_c35830	0.43	-0.7
3,752,777	-		PGA1_c35830	0.44	-3.5
3,752,777	-		PGA1_c35830	0.44	-0.0
3,752,843	+		PGA1_c35830	0.61	-2.1