Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c35470 and PGA1_c35480 are separated by 1 nucleotides PGA1_c35480 and PGA1_c35490 overlap by 4 nucleotides PGA1_c35490 and PGA1_c35500 are separated by 41 nucleotides PGA1_c35500 and PGA1_c35510 are separated by 29 nucleotides
PGA1_c35470: PGA1_c35470 - protein YciI, at 3,718,435 to 3,718,707
_c35470
PGA1_c35480: PGA1_c35480 - glycerol-3-phosphate dehydrogenase GpsA, at 3,718,709 to 3,719,671
_c35480
PGA1_c35490: PGA1_c35490 - putative O-sialoglycoprotein endopeptidase, at 3,719,668 to 3,720,765
_c35490
PGA1_c35500: PGA1_c35500 - uoporphyrinogen-III synthase HemD-like protein, at 3,720,807 to 3,721,574
_c35500
PGA1_c35510: PGA1_c35510 - hypothetical protein, at 3,721,604 to 3,722,986
_c35510
Position (kb)
3719
3720
3721 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 3718.676 kb on + strand, within PGA1_c35470 at 3718.676 kb on + strand, within PGA1_c35470 at 3718.676 kb on + strand, within PGA1_c35470 at 3718.749 kb on - strand at 3718.774 kb on - strand at 3718.780 kb on + strand at 3718.859 kb on + strand, within PGA1_c35480 at 3718.933 kb on + strand, within PGA1_c35480 at 3719.035 kb on + strand, within PGA1_c35480 at 3719.069 kb on + strand, within PGA1_c35480 at 3719.082 kb on - strand, within PGA1_c35480 at 3719.125 kb on - strand, within PGA1_c35480 at 3719.150 kb on - strand, within PGA1_c35480 at 3719.153 kb on - strand, within PGA1_c35480 at 3719.157 kb on + strand, within PGA1_c35480 at 3719.211 kb on + strand, within PGA1_c35480 at 3719.218 kb on + strand, within PGA1_c35480 at 3719.219 kb on - strand, within PGA1_c35480 at 3719.223 kb on + strand, within PGA1_c35480 at 3719.231 kb on - strand, within PGA1_c35480 at 3719.288 kb on + strand, within PGA1_c35480 at 3719.296 kb on - strand, within PGA1_c35480 at 3719.318 kb on + strand, within PGA1_c35480 at 3719.375 kb on + strand, within PGA1_c35480 at 3719.375 kb on + strand, within PGA1_c35480 at 3719.375 kb on + strand, within PGA1_c35480 at 3719.375 kb on + strand, within PGA1_c35480 at 3719.383 kb on - strand, within PGA1_c35480 at 3719.383 kb on - strand, within PGA1_c35480 at 3719.383 kb on - strand, within PGA1_c35480 at 3719.383 kb on - strand, within PGA1_c35480 at 3719.383 kb on - strand, within PGA1_c35480 at 3719.396 kb on + strand, within PGA1_c35480 at 3719.431 kb on - strand, within PGA1_c35480 at 3719.465 kb on + strand, within PGA1_c35480 at 3719.482 kb on + strand, within PGA1_c35480 at 3719.497 kb on + strand, within PGA1_c35480 at 3719.642 kb on - strand at 3719.667 kb on - strand at 3719.667 kb on - strand at 3720.767 kb on - strand at 3720.803 kb on + strand at 3720.804 kb on + strand at 3720.804 kb on + strand at 3720.809 kb on - strand at 3720.823 kb on + strand at 3720.825 kb on + strand at 3720.831 kb on - strand at 3720.840 kb on - strand at 3721.535 kb on - strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.547 kb on + strand at 3721.555 kb on - strand at 3721.555 kb on - strand at 3721.593 kb on - strand at 3721.618 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 3,718,676 + PGA1_c35470 0.88 +1.3 3,718,676 + PGA1_c35470 0.88 +2.6 3,718,676 + PGA1_c35470 0.88 -0.8 3,718,749 - +0.8 3,718,774 - -0.8 3,718,780 + -0.1 3,718,859 + PGA1_c35480 0.16 -3.4 3,718,933 + PGA1_c35480 0.23 -1.5 3,719,035 + PGA1_c35480 0.34 +1.4 3,719,069 + PGA1_c35480 0.37 +0.1 3,719,082 - PGA1_c35480 0.39 -0.5 3,719,125 - PGA1_c35480 0.43 +0.4 3,719,150 - PGA1_c35480 0.46 -0.3 3,719,153 - PGA1_c35480 0.46 -1.4 3,719,157 + PGA1_c35480 0.47 +0.5 3,719,211 + PGA1_c35480 0.52 +0.9 3,719,218 + PGA1_c35480 0.53 +0.5 3,719,219 - PGA1_c35480 0.53 -2.4 3,719,223 + PGA1_c35480 0.53 +0.8 3,719,231 - PGA1_c35480 0.54 -1.5 3,719,288 + PGA1_c35480 0.60 -1.6 3,719,296 - PGA1_c35480 0.61 -0.5 3,719,318 + PGA1_c35480 0.63 -1.3 3,719,375 + PGA1_c35480 0.69 +0.6 3,719,375 + PGA1_c35480 0.69 +0.5 3,719,375 + PGA1_c35480 0.69 +1.8 3,719,375 + PGA1_c35480 0.69 +0.6 3,719,383 - PGA1_c35480 0.70 +0.7 3,719,383 - PGA1_c35480 0.70 -0.2 3,719,383 - PGA1_c35480 0.70 -0.5 3,719,383 - PGA1_c35480 0.70 -0.3 3,719,383 - PGA1_c35480 0.70 -3.9 3,719,396 + PGA1_c35480 0.71 +1.1 3,719,431 - PGA1_c35480 0.75 -0.5 3,719,465 + PGA1_c35480 0.79 -1.0 3,719,482 + PGA1_c35480 0.80 +0.9 3,719,497 + PGA1_c35480 0.82 +0.5 3,719,642 - +0.4 3,719,667 - -0.2 3,719,667 - -0.9 3,720,767 - +0.6 3,720,803 + +0.7 3,720,804 + -2.1 3,720,804 + +0.8 3,720,809 - +0.8 3,720,823 + +1.3 3,720,825 + -0.2 3,720,831 - +0.5 3,720,840 - +1.2 3,721,535 - -0.7 3,721,547 + +2.0 3,721,547 + +0.1 3,721,547 + +2.1 3,721,547 + -0.0 3,721,547 + -0.9 3,721,547 + +1.1 3,721,547 + +0.1 3,721,547 + +0.1 3,721,547 + +0.1 3,721,547 + -0.9 3,721,547 + +1.1 3,721,547 + -0.9 3,721,547 + +0.1 3,721,547 + -0.0 3,721,547 + +0.3 3,721,547 + -0.3 3,721,547 + -1.9 3,721,547 + -0.1 3,721,555 - +1.6 3,721,555 - +0.8 3,721,593 - -3.0 3,721,618 - -1.3
Or see this region's nucleotide sequence