Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c03090

Experiment: m.b. Vancomycin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c03070 and PGA1_c03080 are separated by 76 nucleotidesPGA1_c03080 and PGA1_c03090 are separated by 137 nucleotidesPGA1_c03090 and PGA1_c03100 are separated by 5 nucleotides PGA1_c03070: PGA1_c03070 - putative uracil DNA glycosylase, at 293,906 to 294,667 _c03070 PGA1_c03080: PGA1_c03080 - molybdenum cofactor biosynthesis protein B, at 294,744 to 295,286 _c03080 PGA1_c03090: PGA1_c03090 - putative secretion protein, at 295,424 to 296,914 _c03090 PGA1_c03100: PGA1_c03100 - putative aminoglycoside efflux pump, at 296,920 to 300,315 _c03100 Position (kb) 295 296 297Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 294.640 kb on + strandat 294.648 kb on - strandat 294.648 kb on - strandat 294.729 kb on - strandat 294.734 kb on + strandat 294.742 kb on - strandat 294.742 kb on - strandat 294.753 kb on + strandat 294.800 kb on - strand, within PGA1_c03080at 294.811 kb on + strand, within PGA1_c03080at 294.982 kb on + strand, within PGA1_c03080at 294.982 kb on + strand, within PGA1_c03080at 294.987 kb on + strand, within PGA1_c03080at 295.017 kb on + strand, within PGA1_c03080at 295.062 kb on + strand, within PGA1_c03080at 295.062 kb on + strand, within PGA1_c03080at 295.062 kb on + strand, within PGA1_c03080at 295.128 kb on + strand, within PGA1_c03080at 295.165 kb on + strand, within PGA1_c03080at 295.165 kb on + strand, within PGA1_c03080at 295.165 kb on + strand, within PGA1_c03080at 295.269 kb on + strandat 295.269 kb on + strandat 295.291 kb on + strandat 295.291 kb on + strandat 295.291 kb on + strandat 295.307 kb on + strandat 295.307 kb on + strandat 295.315 kb on - strandat 295.316 kb on - strandat 295.317 kb on - strandat 295.318 kb on + strandat 295.332 kb on - strandat 295.337 kb on - strandat 295.357 kb on - strandat 295.517 kb on + strandat 295.517 kb on + strandat 295.653 kb on + strand, within PGA1_c03090at 295.653 kb on + strand, within PGA1_c03090at 295.712 kb on - strand, within PGA1_c03090at 295.775 kb on + strand, within PGA1_c03090at 295.847 kb on - strand, within PGA1_c03090at 295.849 kb on + strand, within PGA1_c03090at 295.943 kb on - strand, within PGA1_c03090at 295.987 kb on - strand, within PGA1_c03090at 296.010 kb on + strand, within PGA1_c03090at 296.020 kb on + strand, within PGA1_c03090at 296.083 kb on + strand, within PGA1_c03090at 296.083 kb on + strand, within PGA1_c03090at 296.113 kb on + strand, within PGA1_c03090at 296.121 kb on + strand, within PGA1_c03090at 296.181 kb on - strand, within PGA1_c03090at 296.230 kb on - strand, within PGA1_c03090at 296.271 kb on + strand, within PGA1_c03090at 296.279 kb on - strand, within PGA1_c03090at 296.372 kb on + strand, within PGA1_c03090at 296.473 kb on - strand, within PGA1_c03090at 296.516 kb on - strand, within PGA1_c03090at 296.610 kb on - strand, within PGA1_c03090at 296.612 kb on + strand, within PGA1_c03090at 296.613 kb on + strand, within PGA1_c03090at 296.620 kb on - strand, within PGA1_c03090at 296.620 kb on - strand, within PGA1_c03090at 296.638 kb on - strand, within PGA1_c03090at 296.646 kb on + strand, within PGA1_c03090at 296.646 kb on + strand, within PGA1_c03090at 296.654 kb on - strand, within PGA1_c03090at 296.691 kb on + strand, within PGA1_c03090at 296.691 kb on + strand, within PGA1_c03090at 296.691 kb on + strand, within PGA1_c03090at 296.691 kb on + strand, within PGA1_c03090at 296.923 kb on - strandat 296.923 kb on - strandat 297.118 kb on + strandat 297.118 kb on - strandat 297.118 kb on - strandat 297.188 kb on + strandat 297.196 kb on - strandat 297.232 kb on + strandat 297.327 kb on + strand, within PGA1_c03100at 297.392 kb on + strand, within PGA1_c03100at 297.392 kb on + strand, within PGA1_c03100at 297.428 kb on + strand, within PGA1_c03100at 297.585 kb on + strand, within PGA1_c03100at 297.632 kb on + strand, within PGA1_c03100at 297.682 kb on + strand, within PGA1_c03100at 297.685 kb on - strand, within PGA1_c03100at 297.685 kb on - strand, within PGA1_c03100at 297.691 kb on + strand, within PGA1_c03100at 297.790 kb on + strand, within PGA1_c03100at 297.798 kb on - strand, within PGA1_c03100at 297.830 kb on - strand, within PGA1_c03100at 297.834 kb on + strand, within PGA1_c03100at 297.877 kb on + strand, within PGA1_c03100at 297.890 kb on - strand, within PGA1_c03100

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml
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294,640 + -0.7
294,648 - -1.1
294,648 - -3.1
294,729 - -0.5
294,734 + +0.5
294,742 - +0.3
294,742 - +0.0
294,753 + +0.4
294,800 - PGA1_c03080 0.10 -0.3
294,811 + PGA1_c03080 0.12 +0.9
294,982 + PGA1_c03080 0.44 -0.1
294,982 + PGA1_c03080 0.44 +0.9
294,987 + PGA1_c03080 0.45 +0.7
295,017 + PGA1_c03080 0.50 -0.7
295,062 + PGA1_c03080 0.59 -0.1
295,062 + PGA1_c03080 0.59 -2.3
295,062 + PGA1_c03080 0.59 -2.7
295,128 + PGA1_c03080 0.71 +0.4
295,165 + PGA1_c03080 0.78 -2.1
295,165 + PGA1_c03080 0.78 +0.9
295,165 + PGA1_c03080 0.78 -0.6
295,269 + +0.6
295,269 + -1.4
295,291 + -0.8
295,291 + +0.9
295,291 + -0.1
295,307 + -1.8
295,307 + -0.7
295,315 - -0.8
295,316 - -1.4
295,317 - -1.2
295,318 + +1.3
295,332 - -0.2
295,337 - -0.1
295,357 - +1.5
295,517 + -0.5
295,517 + -0.1
295,653 + PGA1_c03090 0.15 +0.5
295,653 + PGA1_c03090 0.15 -2.1
295,712 - PGA1_c03090 0.19 +0.2
295,775 + PGA1_c03090 0.24 -1.6
295,847 - PGA1_c03090 0.28 -1.6
295,849 + PGA1_c03090 0.29 -0.1
295,943 - PGA1_c03090 0.35 -0.1
295,987 - PGA1_c03090 0.38 +0.3
296,010 + PGA1_c03090 0.39 -2.4
296,020 + PGA1_c03090 0.40 +0.5
296,083 + PGA1_c03090 0.44 +0.3
296,083 + PGA1_c03090 0.44 +1.2
296,113 + PGA1_c03090 0.46 -0.1
296,121 + PGA1_c03090 0.47 +0.9
296,181 - PGA1_c03090 0.51 -2.1
296,230 - PGA1_c03090 0.54 -1.4
296,271 + PGA1_c03090 0.57 -0.4
296,279 - PGA1_c03090 0.57 +0.2
296,372 + PGA1_c03090 0.64 -1.9
296,473 - PGA1_c03090 0.70 +0.9
296,516 - PGA1_c03090 0.73 -0.1
296,610 - PGA1_c03090 0.80 -1.1
296,612 + PGA1_c03090 0.80 +0.3
296,613 + PGA1_c03090 0.80 -0.1
296,620 - PGA1_c03090 0.80 -0.7
296,620 - PGA1_c03090 0.80 +0.5
296,638 - PGA1_c03090 0.81 -0.9
296,646 + PGA1_c03090 0.82 -1.1
296,646 + PGA1_c03090 0.82 -1.0
296,654 - PGA1_c03090 0.82 -1.9
296,691 + PGA1_c03090 0.85 +0.9
296,691 + PGA1_c03090 0.85 -0.6
296,691 + PGA1_c03090 0.85 -0.1
296,691 + PGA1_c03090 0.85 -0.1
296,923 - -1.4
296,923 - +1.0
297,118 + -0.4
297,118 - -1.4
297,118 - +0.9
297,188 + -0.1
297,196 - +1.9
297,232 + -0.1
297,327 + PGA1_c03100 0.12 +0.1
297,392 + PGA1_c03100 0.14 -1.4
297,392 + PGA1_c03100 0.14 +1.5
297,428 + PGA1_c03100 0.15 -0.7
297,585 + PGA1_c03100 0.20 +1.2
297,632 + PGA1_c03100 0.21 -2.7
297,682 + PGA1_c03100 0.22 +0.9
297,685 - PGA1_c03100 0.23 +0.3
297,685 - PGA1_c03100 0.23 -0.7
297,691 + PGA1_c03100 0.23 -0.1
297,790 + PGA1_c03100 0.26 -2.3
297,798 - PGA1_c03100 0.26 +0.0
297,830 - PGA1_c03100 0.27 -0.1
297,834 + PGA1_c03100 0.27 -0.7
297,877 + PGA1_c03100 0.28 +0.9
297,890 - PGA1_c03100 0.29 +0.3

Or see this region's nucleotide sequence