Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02590 and PGA1_c02600 are separated by 4 nucleotides PGA1_c02600 and PGA1_c02610 overlap by 4 nucleotides PGA1_c02610 and PGA1_c02620 overlap by 1 nucleotides
PGA1_c02590: PGA1_c02590 - putative high-affinity branched-chain amino acid transport system permease protein LivH, at 243,154 to 244,029
_c02590
PGA1_c02600: PGA1_c02600 - putative high-affinity branched-chain amino acid transport system permease protein LivM, at 244,034 to 245,119
_c02600
PGA1_c02610: PGA1_c02610 - putative high-affinity branched-chain amino acid transport ATP-binding protein LivG, at 245,116 to 245,883
_c02610
PGA1_c02620: PGA1_c02620 - high-affinity branched-chain amino acid transport ATP-binding protein LivF, at 245,883 to 246,656
_c02620
Position (kb) 244
245
246 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 243.040 kb on + strand at 243.055 kb on + strand at 243.062 kb on - strand at 243.064 kb on + strand at 243.067 kb on - strand at 243.067 kb on - strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.087 kb on + strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.095 kb on - strand at 243.097 kb on + strand at 243.105 kb on - strand at 243.150 kb on - strand at 243.161 kb on + strand at 243.169 kb on - strand at 243.182 kb on - strand at 243.221 kb on + strand at 243.221 kb on + strand at 243.226 kb on + strand at 243.226 kb on + strand at 243.229 kb on - strand at 243.282 kb on + strand, within PGA1_c02590 at 243.298 kb on - strand, within PGA1_c02590 at 243.299 kb on + strand, within PGA1_c02590 at 243.307 kb on - strand, within PGA1_c02590 at 243.377 kb on + strand, within PGA1_c02590 at 243.397 kb on + strand, within PGA1_c02590 at 243.453 kb on - strand, within PGA1_c02590 at 243.453 kb on - strand, within PGA1_c02590 at 243.508 kb on - strand, within PGA1_c02590 at 243.604 kb on + strand, within PGA1_c02590 at 243.686 kb on - strand, within PGA1_c02590 at 243.715 kb on + strand, within PGA1_c02590 at 243.724 kb on + strand, within PGA1_c02590 at 243.724 kb on + strand, within PGA1_c02590 at 243.813 kb on + strand, within PGA1_c02590 at 243.819 kb on + strand, within PGA1_c02590 at 243.826 kb on + strand, within PGA1_c02590 at 243.849 kb on - strand, within PGA1_c02590 at 243.864 kb on + strand, within PGA1_c02590 at 243.901 kb on + strand, within PGA1_c02590 at 243.953 kb on + strand at 243.973 kb on + strand at 243.989 kb on + strand at 243.989 kb on + strand at 244.005 kb on - strand at 244.023 kb on + strand at 244.023 kb on + strand at 244.023 kb on + strand at 244.023 kb on + strand at 244.031 kb on - strand at 244.089 kb on + strand at 244.102 kb on + strand at 244.110 kb on - strand at 244.164 kb on - strand, within PGA1_c02600 at 244.164 kb on - strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.181 kb on + strand, within PGA1_c02600 at 244.189 kb on - strand, within PGA1_c02600 at 244.211 kb on - strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.240 kb on + strand, within PGA1_c02600 at 244.248 kb on - strand, within PGA1_c02600 at 244.251 kb on + strand, within PGA1_c02600 at 244.282 kb on + strand, within PGA1_c02600 at 244.295 kb on - strand, within PGA1_c02600 at 244.305 kb on - strand, within PGA1_c02600 at 244.306 kb on + strand, within PGA1_c02600 at 244.306 kb on + strand, within PGA1_c02600 at 244.322 kb on - strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.398 kb on + strand, within PGA1_c02600 at 244.401 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.406 kb on - strand, within PGA1_c02600 at 244.419 kb on + strand, within PGA1_c02600 at 244.465 kb on + strand, within PGA1_c02600 at 244.465 kb on + strand, within PGA1_c02600 at 244.473 kb on - strand, within PGA1_c02600 at 244.473 kb on - strand, within PGA1_c02600 at 244.513 kb on - strand, within PGA1_c02600 at 244.544 kb on - strand, within PGA1_c02600 at 244.567 kb on + strand, within PGA1_c02600 at 244.577 kb on + strand, within PGA1_c02600 at 244.577 kb on + strand, within PGA1_c02600 at 244.577 kb on + strand, within PGA1_c02600 at 244.619 kb on + strand, within PGA1_c02600 at 244.657 kb on + strand, within PGA1_c02600 at 244.688 kb on + strand, within PGA1_c02600 at 244.725 kb on - strand, within PGA1_c02600 at 244.733 kb on + strand, within PGA1_c02600 at 244.737 kb on + strand, within PGA1_c02600 at 244.737 kb on + strand, within PGA1_c02600 at 244.737 kb on + strand, within PGA1_c02600 at 244.784 kb on + strand, within PGA1_c02600 at 244.803 kb on + strand, within PGA1_c02600 at 244.816 kb on + strand, within PGA1_c02600 at 244.913 kb on + strand, within PGA1_c02600 at 244.919 kb on + strand, within PGA1_c02600 at 244.919 kb on + strand, within PGA1_c02600 at 244.919 kb on + strand, within PGA1_c02600 at 244.924 kb on + strand, within PGA1_c02600 at 244.924 kb on + strand, within PGA1_c02600 at 244.927 kb on - strand, within PGA1_c02600 at 244.982 kb on - strand, within PGA1_c02600 at 244.982 kb on - strand, within PGA1_c02600 at 245.040 kb on + strand at 245.048 kb on - strand at 245.048 kb on - strand at 245.048 kb on - strand at 245.048 kb on - strand at 245.050 kb on + strand at 245.058 kb on - strand at 245.058 kb on - strand at 245.110 kb on + strand at 245.110 kb on + strand at 245.113 kb on + strand at 245.115 kb on + strand at 245.118 kb on - strand at 245.118 kb on - strand at 245.118 kb on - strand at 245.118 kb on - strand at 245.118 kb on - strand at 245.124 kb on + strand at 245.127 kb on - strand at 245.132 kb on - strand at 245.205 kb on + strand, within PGA1_c02610 at 245.208 kb on - strand, within PGA1_c02610 at 245.213 kb on - strand, within PGA1_c02610 at 245.227 kb on + strand, within PGA1_c02610 at 245.230 kb on - strand, within PGA1_c02610 at 245.289 kb on - strand, within PGA1_c02610 at 245.322 kb on + strand, within PGA1_c02610 at 245.322 kb on + strand, within PGA1_c02610 at 245.322 kb on + strand, within PGA1_c02610 at 245.322 kb on + strand, within PGA1_c02610 at 245.330 kb on - strand, within PGA1_c02610 at 245.330 kb on - strand, within PGA1_c02610 at 245.330 kb on - strand, within PGA1_c02610 at 245.373 kb on - strand, within PGA1_c02610 at 245.398 kb on + strand, within PGA1_c02610 at 245.429 kb on + strand, within PGA1_c02610 at 245.448 kb on + strand, within PGA1_c02610 at 245.535 kb on + strand, within PGA1_c02610 at 245.549 kb on - strand, within PGA1_c02610 at 245.560 kb on - strand, within PGA1_c02610 at 245.571 kb on + strand, within PGA1_c02610 at 245.571 kb on + strand, within PGA1_c02610 at 245.571 kb on + strand, within PGA1_c02610 at 245.579 kb on - strand, within PGA1_c02610 at 245.579 kb on - strand, within PGA1_c02610 at 245.581 kb on - strand, within PGA1_c02610 at 245.613 kb on + strand, within PGA1_c02610 at 245.646 kb on + strand, within PGA1_c02610 at 245.737 kb on + strand, within PGA1_c02610 at 245.760 kb on - strand, within PGA1_c02610 at 245.790 kb on + strand, within PGA1_c02610 at 245.835 kb on + strand at 245.835 kb on + strand at 245.835 kb on + strand at 245.843 kb on - strand at 245.882 kb on + strand at 245.886 kb on + strand at 245.902 kb on - strand at 245.937 kb on - strand at 245.937 kb on - strand at 245.964 kb on + strand, within PGA1_c02620 at 245.964 kb on + strand, within PGA1_c02620 at 245.964 kb on + strand, within PGA1_c02620 at 245.972 kb on - strand, within PGA1_c02620 at 245.978 kb on + strand, within PGA1_c02620 at 246.013 kb on + strand, within PGA1_c02620 at 246.033 kb on + strand, within PGA1_c02620 at 246.086 kb on + strand, within PGA1_c02620 at 246.107 kb on - strand, within PGA1_c02620
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 243,040 + +1.9 243,055 + +1.6 243,062 - -0.4 243,064 + -0.3 243,067 - +0.3 243,067 - -0.0 243,087 + -0.3 243,087 + -0.2 243,087 + -0.8 243,087 + +0.8 243,087 + +0.5 243,087 + +0.0 243,087 + +0.8 243,087 + -1.4 243,087 + +0.9 243,087 + +0.0 243,087 + -1.1 243,087 + +1.1 243,087 + -2.1 243,087 + -0.9 243,087 + -0.7 243,087 + +0.0 243,087 + -0.6 243,087 + +0.4 243,087 + -0.7 243,087 + -0.9 243,087 + +0.0 243,087 + +0.5 243,087 + -0.2 243,087 + +0.7 243,087 + -3.0 243,087 + +0.6 243,087 + +0.5 243,087 + +0.4 243,087 + +0.4 243,087 + -0.0 243,087 + +2.2 243,087 + -1.9 243,087 + +2.5 243,087 + +0.4 243,095 - +0.5 243,095 - -0.4 243,095 - +0.4 243,095 - +1.3 243,095 - -1.2 243,095 - +0.5 243,095 - -0.3 243,095 - -0.8 243,095 - +0.6 243,095 - -0.3 243,095 - -1.8 243,095 - +0.2 243,095 - -1.0 243,095 - +0.5 243,095 - +0.1 243,097 + -1.7 243,105 - -1.7 243,150 - +0.5 243,161 + -0.7 243,169 - +1.7 243,182 - +0.6 243,221 + +0.3 243,221 + +0.2 243,226 + -0.0 243,226 + +0.0 243,229 - +0.7 243,282 + PGA1_c02590 0.15 -1.1 243,298 - PGA1_c02590 0.16 -0.4 243,299 + PGA1_c02590 0.17 -0.5 243,307 - PGA1_c02590 0.17 -2.6 243,377 + PGA1_c02590 0.25 -0.1 243,397 + PGA1_c02590 0.28 -0.1 243,453 - PGA1_c02590 0.34 -1.1 243,453 - PGA1_c02590 0.34 +0.5 243,508 - PGA1_c02590 0.40 -0.5 243,604 + PGA1_c02590 0.51 +1.1 243,686 - PGA1_c02590 0.61 +1.8 243,715 + PGA1_c02590 0.64 +1.4 243,724 + PGA1_c02590 0.65 -1.7 243,724 + PGA1_c02590 0.65 -0.3 243,813 + PGA1_c02590 0.75 +0.2 243,819 + PGA1_c02590 0.76 -0.5 243,826 + PGA1_c02590 0.77 -1.7 243,849 - PGA1_c02590 0.79 +1.1 243,864 + PGA1_c02590 0.81 -0.8 243,901 + PGA1_c02590 0.85 -0.3 243,953 + +1.5 243,973 + -0.1 243,989 + +0.9 243,989 + +0.4 244,005 - +1.1 244,023 + -1.5 244,023 + -1.7 244,023 + +0.2 244,023 + -0.1 244,031 - +0.2 244,089 + -0.4 244,102 + +1.7 244,110 - +0.3 244,164 - PGA1_c02600 0.12 -0.4 244,164 - PGA1_c02600 0.12 -0.8 244,181 + PGA1_c02600 0.14 -1.4 244,181 + PGA1_c02600 0.14 -1.1 244,181 + PGA1_c02600 0.14 +1.2 244,181 + PGA1_c02600 0.14 -0.8 244,181 + PGA1_c02600 0.14 +1.8 244,189 - PGA1_c02600 0.14 -1.3 244,211 - PGA1_c02600 0.16 -0.7 244,240 + PGA1_c02600 0.19 -0.7 244,240 + PGA1_c02600 0.19 +0.5 244,240 + PGA1_c02600 0.19 +0.7 244,240 + PGA1_c02600 0.19 +1.0 244,240 + PGA1_c02600 0.19 +1.6 244,240 + PGA1_c02600 0.19 +0.5 244,248 - PGA1_c02600 0.20 +0.0 244,251 + PGA1_c02600 0.20 -0.9 244,282 + PGA1_c02600 0.23 -3.4 244,295 - PGA1_c02600 0.24 +0.8 244,305 - PGA1_c02600 0.25 -0.1 244,306 + PGA1_c02600 0.25 -0.0 244,306 + PGA1_c02600 0.25 -0.2 244,322 - PGA1_c02600 0.27 +0.2 244,398 + PGA1_c02600 0.34 -0.4 244,398 + PGA1_c02600 0.34 +0.6 244,398 + PGA1_c02600 0.34 -0.7 244,398 + PGA1_c02600 0.34 -1.1 244,398 + PGA1_c02600 0.34 +0.1 244,398 + PGA1_c02600 0.34 -0.9 244,398 + PGA1_c02600 0.34 +1.3 244,398 + PGA1_c02600 0.34 +1.2 244,398 + PGA1_c02600 0.34 -1.2 244,398 + PGA1_c02600 0.34 +0.8 244,398 + PGA1_c02600 0.34 -0.2 244,398 + PGA1_c02600 0.34 -0.7 244,398 + PGA1_c02600 0.34 -0.7 244,398 + PGA1_c02600 0.34 +0.2 244,398 + PGA1_c02600 0.34 +0.0 244,401 - PGA1_c02600 0.34 +1.2 244,406 - PGA1_c02600 0.34 -0.6 244,406 - PGA1_c02600 0.34 +0.7 244,406 - PGA1_c02600 0.34 +0.8 244,406 - PGA1_c02600 0.34 -1.7 244,406 - PGA1_c02600 0.34 -0.1 244,419 + PGA1_c02600 0.35 +1.1 244,465 + PGA1_c02600 0.40 -0.9 244,465 + PGA1_c02600 0.40 -1.0 244,473 - PGA1_c02600 0.40 -0.7 244,473 - PGA1_c02600 0.40 +0.7 244,513 - PGA1_c02600 0.44 +1.0 244,544 - PGA1_c02600 0.47 +0.3 244,567 + PGA1_c02600 0.49 -2.7 244,577 + PGA1_c02600 0.50 -0.3 244,577 + PGA1_c02600 0.50 -1.9 244,577 + PGA1_c02600 0.50 +0.7 244,619 + PGA1_c02600 0.54 +1.6 244,657 + PGA1_c02600 0.57 -2.2 244,688 + PGA1_c02600 0.60 +0.0 244,725 - PGA1_c02600 0.64 -0.8 244,733 + PGA1_c02600 0.64 -0.0 244,737 + PGA1_c02600 0.65 +1.0 244,737 + PGA1_c02600 0.65 -0.7 244,737 + PGA1_c02600 0.65 -0.1 244,784 + PGA1_c02600 0.69 +1.3 244,803 + PGA1_c02600 0.71 -0.1 244,816 + PGA1_c02600 0.72 +0.5 244,913 + PGA1_c02600 0.81 -0.3 244,919 + PGA1_c02600 0.81 -0.6 244,919 + PGA1_c02600 0.81 +0.9 244,919 + PGA1_c02600 0.81 -0.7 244,924 + PGA1_c02600 0.82 -0.4 244,924 + PGA1_c02600 0.82 +1.7 244,927 - PGA1_c02600 0.82 +0.2 244,982 - PGA1_c02600 0.87 -2.8 244,982 - PGA1_c02600 0.87 -3.5 245,040 + -0.9 245,048 - +0.9 245,048 - +0.9 245,048 - -1.0 245,048 - -0.4 245,050 + +1.8 245,058 - +0.7 245,058 - +0.5 245,110 + -1.7 245,110 + -1.9 245,113 + +1.7 245,115 + +1.4 245,118 - +2.2 245,118 - -1.9 245,118 - +0.9 245,118 - +0.6 245,118 - +0.9 245,124 + +0.2 245,127 - -1.4 245,132 - -0.7 245,205 + PGA1_c02610 0.12 +1.4 245,208 - PGA1_c02610 0.12 +0.3 245,213 - PGA1_c02610 0.13 -0.7 245,227 + PGA1_c02610 0.14 +0.5 245,230 - PGA1_c02610 0.15 +1.3 245,289 - PGA1_c02610 0.23 +1.7 245,322 + PGA1_c02610 0.27 +1.6 245,322 + PGA1_c02610 0.27 +1.0 245,322 + PGA1_c02610 0.27 -0.6 245,322 + PGA1_c02610 0.27 -1.8 245,330 - PGA1_c02610 0.28 +0.4 245,330 - PGA1_c02610 0.28 +1.3 245,330 - PGA1_c02610 0.28 -3.6 245,373 - PGA1_c02610 0.33 -0.2 245,398 + PGA1_c02610 0.37 -0.1 245,429 + PGA1_c02610 0.41 -1.0 245,448 + PGA1_c02610 0.43 -2.1 245,535 + PGA1_c02610 0.55 +0.6 245,549 - PGA1_c02610 0.56 +0.1 245,560 - PGA1_c02610 0.58 +1.4 245,571 + PGA1_c02610 0.59 +0.8 245,571 + PGA1_c02610 0.59 -3.4 245,571 + PGA1_c02610 0.59 +0.6 245,579 - PGA1_c02610 0.60 +0.5 245,579 - PGA1_c02610 0.60 +0.9 245,581 - PGA1_c02610 0.61 +0.3 245,613 + PGA1_c02610 0.65 +0.2 245,646 + PGA1_c02610 0.69 +0.6 245,737 + PGA1_c02610 0.81 +0.5 245,760 - PGA1_c02610 0.84 +0.2 245,790 + PGA1_c02610 0.88 +1.1 245,835 + +1.0 245,835 + -0.4 245,835 + +0.6 245,843 - +0.9 245,882 + +0.6 245,886 + +0.5 245,902 - +1.0 245,937 - +0.0 245,937 - +0.4 245,964 + PGA1_c02620 0.10 -0.8 245,964 + PGA1_c02620 0.10 +0.4 245,964 + PGA1_c02620 0.10 +0.7 245,972 - PGA1_c02620 0.11 -0.6 245,978 + PGA1_c02620 0.12 +0.2 246,013 + PGA1_c02620 0.17 -0.3 246,033 + PGA1_c02620 0.19 -0.7 246,086 + PGA1_c02620 0.26 -0.0 246,107 - PGA1_c02620 0.29 -1.8
Or see this region's nucleotide sequence