Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02440 and PGA1_c02450 overlap by 4 nucleotides PGA1_c02450 and PGA1_c02460 are separated by 86 nucleotides
PGA1_c02440: PGA1_c02440 - putative ATP-binding/permease fusion ABC transporter, at 220,842 to 223,208
_c02440
PGA1_c02450: PGA1_c02450 - putative outer membrane efflux protein, at 223,205 to 224,524
_c02450
PGA1_c02460: PGA1_c02460 - hypothetical protein, at 224,611 to 228,288
_c02460
Position (kb) 223
224
225 Strain fitness (log2 ratio) -1
0
1
2
3
4
5 at 222.260 kb on - strand, within PGA1_c02440 at 222.261 kb on + strand, within PGA1_c02440 at 222.269 kb on - strand, within PGA1_c02440 at 222.319 kb on + strand, within PGA1_c02440 at 222.327 kb on - strand, within PGA1_c02440 at 222.387 kb on + strand, within PGA1_c02440 at 222.390 kb on - strand, within PGA1_c02440 at 222.395 kb on - strand, within PGA1_c02440 at 222.395 kb on - strand, within PGA1_c02440 at 222.401 kb on - strand, within PGA1_c02440 at 222.408 kb on + strand, within PGA1_c02440 at 222.416 kb on + strand, within PGA1_c02440 at 222.416 kb on + strand, within PGA1_c02440 at 222.416 kb on - strand, within PGA1_c02440 at 222.416 kb on - strand, within PGA1_c02440 at 222.419 kb on + strand, within PGA1_c02440 at 222.422 kb on - strand, within PGA1_c02440 at 222.424 kb on - strand, within PGA1_c02440 at 222.461 kb on + strand, within PGA1_c02440 at 222.461 kb on + strand, within PGA1_c02440 at 222.532 kb on + strand, within PGA1_c02440 at 222.598 kb on - strand, within PGA1_c02440 at 222.598 kb on - strand, within PGA1_c02440 at 222.611 kb on + strand, within PGA1_c02440 at 222.704 kb on - strand, within PGA1_c02440 at 222.790 kb on - strand, within PGA1_c02440 at 222.819 kb on + strand, within PGA1_c02440 at 222.830 kb on + strand, within PGA1_c02440 at 222.897 kb on + strand, within PGA1_c02440 at 222.958 kb on + strand, within PGA1_c02440 at 222.966 kb on - strand, within PGA1_c02440 at 222.966 kb on - strand, within PGA1_c02440 at 223.030 kb on - strand at 223.062 kb on - strand at 223.094 kb on - strand at 223.094 kb on - strand at 223.125 kb on - strand at 223.184 kb on - strand at 223.186 kb on + strand at 223.203 kb on + strand at 223.254 kb on + strand at 223.267 kb on - strand at 223.312 kb on + strand at 223.315 kb on - strand at 223.341 kb on + strand, within PGA1_c02450 at 223.354 kb on - strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.356 kb on + strand, within PGA1_c02450 at 223.364 kb on - strand, within PGA1_c02450 at 223.364 kb on - strand, within PGA1_c02450 at 223.364 kb on - strand, within PGA1_c02450 at 223.364 kb on - strand, within PGA1_c02450 at 223.364 kb on - strand, within PGA1_c02450 at 223.364 kb on - strand, within PGA1_c02450 at 223.410 kb on - strand, within PGA1_c02450 at 223.410 kb on - strand, within PGA1_c02450 at 223.444 kb on - strand, within PGA1_c02450 at 223.499 kb on + strand, within PGA1_c02450 at 223.569 kb on - strand, within PGA1_c02450 at 223.579 kb on + strand, within PGA1_c02450 at 223.587 kb on - strand, within PGA1_c02450 at 223.605 kb on - strand, within PGA1_c02450 at 223.606 kb on + strand, within PGA1_c02450 at 223.634 kb on + strand, within PGA1_c02450 at 223.640 kb on - strand, within PGA1_c02450 at 223.670 kb on - strand, within PGA1_c02450 at 223.670 kb on - strand, within PGA1_c02450 at 223.672 kb on + strand, within PGA1_c02450 at 223.672 kb on + strand, within PGA1_c02450 at 223.680 kb on - strand, within PGA1_c02450 at 223.680 kb on - strand, within PGA1_c02450 at 223.680 kb on - strand, within PGA1_c02450 at 223.700 kb on + strand, within PGA1_c02450 at 223.742 kb on + strand, within PGA1_c02450 at 223.747 kb on + strand, within PGA1_c02450 at 223.843 kb on - strand, within PGA1_c02450 at 223.872 kb on + strand, within PGA1_c02450 at 223.873 kb on - strand, within PGA1_c02450 at 223.892 kb on + strand, within PGA1_c02450 at 223.900 kb on - strand, within PGA1_c02450 at 223.924 kb on - strand, within PGA1_c02450 at 223.962 kb on - strand, within PGA1_c02450 at 223.962 kb on - strand, within PGA1_c02450 at 223.962 kb on - strand, within PGA1_c02450 at 224.002 kb on + strand, within PGA1_c02450 at 224.002 kb on + strand, within PGA1_c02450 at 224.002 kb on + strand, within PGA1_c02450 at 224.002 kb on + strand, within PGA1_c02450 at 224.010 kb on - strand, within PGA1_c02450 at 224.010 kb on - strand, within PGA1_c02450 at 224.010 kb on - strand, within PGA1_c02450 at 224.010 kb on - strand, within PGA1_c02450 at 224.010 kb on - strand, within PGA1_c02450 at 224.010 kb on - strand, within PGA1_c02450 at 224.019 kb on + strand, within PGA1_c02450 at 224.027 kb on - strand, within PGA1_c02450 at 224.050 kb on + strand, within PGA1_c02450 at 224.227 kb on + strand, within PGA1_c02450 at 224.227 kb on + strand, within PGA1_c02450 at 224.235 kb on - strand, within PGA1_c02450 at 224.235 kb on - strand, within PGA1_c02450 at 224.235 kb on - strand, within PGA1_c02450 at 224.235 kb on - strand, within PGA1_c02450 at 224.245 kb on - strand, within PGA1_c02450 at 224.250 kb on - strand, within PGA1_c02450 at 224.438 kb on + strand at 224.439 kb on + strand at 224.468 kb on + strand at 224.476 kb on - strand at 224.532 kb on + strand at 224.532 kb on + strand at 224.532 kb on + strand at 224.532 kb on + strand at 224.535 kb on - strand at 224.540 kb on - strand at 224.586 kb on - strand at 224.668 kb on + strand at 224.676 kb on - strand at 224.703 kb on + strand at 224.728 kb on - strand at 224.730 kb on + strand at 224.730 kb on + strand at 224.730 kb on + strand at 224.738 kb on - strand at 224.811 kb on + strand at 224.819 kb on - strand at 224.898 kb on - strand at 224.928 kb on + strand at 224.936 kb on + strand at 224.946 kb on - strand at 224.965 kb on + strand at 224.970 kb on + strand at 225.009 kb on - strand, within PGA1_c02460 at 225.050 kb on - strand, within PGA1_c02460 at 225.057 kb on - strand, within PGA1_c02460 at 225.110 kb on - strand, within PGA1_c02460 at 225.190 kb on + strand, within PGA1_c02460 at 225.190 kb on + strand, within PGA1_c02460 at 225.192 kb on + strand, within PGA1_c02460 at 225.198 kb on - strand, within PGA1_c02460 at 225.198 kb on - strand, within PGA1_c02460 at 225.200 kb on - strand, within PGA1_c02460 at 225.200 kb on - strand, within PGA1_c02460 at 225.200 kb on - strand, within PGA1_c02460 at 225.231 kb on + strand, within PGA1_c02460 at 225.281 kb on + strand, within PGA1_c02460 at 225.346 kb on + strand, within PGA1_c02460 at 225.354 kb on + strand, within PGA1_c02460 at 225.362 kb on - strand, within PGA1_c02460 at 225.366 kb on + strand, within PGA1_c02460
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 222,260 - PGA1_c02440 0.60 +0.6 222,261 + PGA1_c02440 0.60 +3.0 222,269 - PGA1_c02440 0.60 +1.1 222,319 + PGA1_c02440 0.62 +2.0 222,327 - PGA1_c02440 0.63 +1.1 222,387 + PGA1_c02440 0.65 +1.3 222,390 - PGA1_c02440 0.65 +1.5 222,395 - PGA1_c02440 0.66 +1.6 222,395 - PGA1_c02440 0.66 +1.4 222,401 - PGA1_c02440 0.66 -0.7 222,408 + PGA1_c02440 0.66 +3.7 222,416 + PGA1_c02440 0.66 +0.5 222,416 + PGA1_c02440 0.66 +1.1 222,416 - PGA1_c02440 0.66 +0.9 222,416 - PGA1_c02440 0.66 +1.4 222,419 + PGA1_c02440 0.67 +2.7 222,422 - PGA1_c02440 0.67 +0.2 222,424 - PGA1_c02440 0.67 +2.3 222,461 + PGA1_c02440 0.68 +2.3 222,461 + PGA1_c02440 0.68 +0.8 222,532 + PGA1_c02440 0.71 -0.5 222,598 - PGA1_c02440 0.74 +1.0 222,598 - PGA1_c02440 0.74 +3.3 222,611 + PGA1_c02440 0.75 +2.0 222,704 - PGA1_c02440 0.79 +1.3 222,790 - PGA1_c02440 0.82 +0.9 222,819 + PGA1_c02440 0.84 +0.3 222,830 + PGA1_c02440 0.84 +2.8 222,897 + PGA1_c02440 0.87 +1.3 222,958 + PGA1_c02440 0.89 +1.2 222,966 - PGA1_c02440 0.90 +0.4 222,966 - PGA1_c02440 0.90 +1.3 223,030 - +1.2 223,062 - +1.0 223,094 - -1.1 223,094 - +1.1 223,125 - +1.7 223,184 - -0.3 223,186 + +1.9 223,203 + +0.2 223,254 + +3.2 223,267 - +0.5 223,312 + +2.9 223,315 - +1.1 223,341 + PGA1_c02450 0.10 +2.2 223,354 - PGA1_c02450 0.11 +3.8 223,356 + PGA1_c02450 0.11 +0.9 223,356 + PGA1_c02450 0.11 +2.0 223,356 + PGA1_c02450 0.11 +0.7 223,356 + PGA1_c02450 0.11 +2.4 223,356 + PGA1_c02450 0.11 +0.6 223,356 + PGA1_c02450 0.11 +0.9 223,356 + PGA1_c02450 0.11 +1.0 223,356 + PGA1_c02450 0.11 +1.2 223,356 + PGA1_c02450 0.11 +3.1 223,364 - PGA1_c02450 0.12 +0.4 223,364 - PGA1_c02450 0.12 +2.4 223,364 - PGA1_c02450 0.12 +1.3 223,364 - PGA1_c02450 0.12 +1.8 223,364 - PGA1_c02450 0.12 +2.4 223,364 - PGA1_c02450 0.12 +0.2 223,410 - PGA1_c02450 0.16 +1.8 223,410 - PGA1_c02450 0.16 +1.6 223,444 - PGA1_c02450 0.18 +4.9 223,499 + PGA1_c02450 0.22 -0.0 223,569 - PGA1_c02450 0.28 +1.7 223,579 + PGA1_c02450 0.28 +1.0 223,587 - PGA1_c02450 0.29 +0.9 223,605 - PGA1_c02450 0.30 +2.8 223,606 + PGA1_c02450 0.30 +0.4 223,634 + PGA1_c02450 0.33 +1.1 223,640 - PGA1_c02450 0.33 -0.4 223,670 - PGA1_c02450 0.35 +1.5 223,670 - PGA1_c02450 0.35 +0.9 223,672 + PGA1_c02450 0.35 +2.1 223,672 + PGA1_c02450 0.35 +0.9 223,680 - PGA1_c02450 0.36 +0.4 223,680 - PGA1_c02450 0.36 +1.3 223,680 - PGA1_c02450 0.36 +3.3 223,700 + PGA1_c02450 0.38 +1.1 223,742 + PGA1_c02450 0.41 +1.6 223,747 + PGA1_c02450 0.41 +2.4 223,843 - PGA1_c02450 0.48 +1.7 223,872 + PGA1_c02450 0.51 +0.6 223,873 - PGA1_c02450 0.51 +1.3 223,892 + PGA1_c02450 0.52 +0.5 223,900 - PGA1_c02450 0.53 +2.7 223,924 - PGA1_c02450 0.54 +2.7 223,962 - PGA1_c02450 0.57 +3.1 223,962 - PGA1_c02450 0.57 +2.1 223,962 - PGA1_c02450 0.57 +0.5 224,002 + PGA1_c02450 0.60 +3.1 224,002 + PGA1_c02450 0.60 -1.1 224,002 + PGA1_c02450 0.60 +1.8 224,002 + PGA1_c02450 0.60 +0.9 224,010 - PGA1_c02450 0.61 +2.1 224,010 - PGA1_c02450 0.61 +0.5 224,010 - PGA1_c02450 0.61 -1.4 224,010 - PGA1_c02450 0.61 +2.2 224,010 - PGA1_c02450 0.61 +3.0 224,010 - PGA1_c02450 0.61 +1.8 224,019 + PGA1_c02450 0.62 +2.2 224,027 - PGA1_c02450 0.62 +1.0 224,050 + PGA1_c02450 0.64 +0.8 224,227 + PGA1_c02450 0.77 -0.3 224,227 + PGA1_c02450 0.77 +2.1 224,235 - PGA1_c02450 0.78 +2.8 224,235 - PGA1_c02450 0.78 +0.5 224,235 - PGA1_c02450 0.78 +2.1 224,235 - PGA1_c02450 0.78 +0.1 224,245 - PGA1_c02450 0.79 +2.7 224,250 - PGA1_c02450 0.79 +2.1 224,438 + +1.2 224,439 + +1.2 224,468 + +1.1 224,476 - +0.3 224,532 + +0.3 224,532 + +1.7 224,532 + -1.0 224,532 + +1.6 224,535 - +1.2 224,540 - -1.4 224,586 - +0.0 224,668 + +2.1 224,676 - +0.6 224,703 + +1.6 224,728 - +2.1 224,730 + +0.3 224,730 + +1.1 224,730 + +1.6 224,738 - +1.7 224,811 + +1.3 224,819 - +2.5 224,898 - +1.9 224,928 + +0.5 224,936 + +2.4 224,946 - +1.1 224,965 + -0.1 224,970 + +1.0 225,009 - PGA1_c02460 0.11 +0.9 225,050 - PGA1_c02460 0.12 -0.0 225,057 - PGA1_c02460 0.12 +1.0 225,110 - PGA1_c02460 0.14 +1.8 225,190 + PGA1_c02460 0.16 -1.4 225,190 + PGA1_c02460 0.16 +0.3 225,192 + PGA1_c02460 0.16 +2.5 225,198 - PGA1_c02460 0.16 +0.5 225,198 - PGA1_c02460 0.16 +1.3 225,200 - PGA1_c02460 0.16 +1.9 225,200 - PGA1_c02460 0.16 +1.1 225,200 - PGA1_c02460 0.16 +0.5 225,231 + PGA1_c02460 0.17 +1.3 225,281 + PGA1_c02460 0.18 +1.0 225,346 + PGA1_c02460 0.20 +0.9 225,354 + PGA1_c02460 0.20 +1.3 225,362 - PGA1_c02460 0.20 +1.7 225,366 + PGA1_c02460 0.21 +2.5
Or see this region's nucleotide sequence