Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c21070 and PGA1_c21080 are separated by 11 nucleotides PGA1_c21080 and PGA1_c21090 are separated by 13 nucleotides PGA1_c21090 and PGA1_c21100 overlap by 14 nucleotides
PGA1_c21070: PGA1_c21070 - betaine aldehyde dehydrogenase BetB, at 2,183,400 to 2,184,866
_c21070
PGA1_c21080: PGA1_c21080 - putative flavin monooxygenase, at 2,184,878 to 2,185,915
_c21080
PGA1_c21090: PGA1_c21090 - putative nitrilotriacetate monooxygenase component B, at 2,185,929 to 2,186,852
_c21090
PGA1_c21100: PGA1_c21100 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 2,186,839 to 2,187,657
_c21100
Position (kb)
2184
2185
2186 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2183.893 kb on - strand, within PGA1_c21070 at 2183.898 kb on - strand, within PGA1_c21070 at 2183.924 kb on - strand, within PGA1_c21070 at 2183.929 kb on - strand, within PGA1_c21070 at 2183.980 kb on + strand, within PGA1_c21070 at 2184.005 kb on + strand, within PGA1_c21070 at 2184.005 kb on + strand, within PGA1_c21070 at 2184.013 kb on - strand, within PGA1_c21070 at 2184.019 kb on + strand, within PGA1_c21070 at 2184.024 kb on + strand, within PGA1_c21070 at 2184.027 kb on - strand, within PGA1_c21070 at 2184.032 kb on - strand, within PGA1_c21070 at 2184.032 kb on - strand, within PGA1_c21070 at 2184.032 kb on - strand, within PGA1_c21070 at 2184.032 kb on - strand, within PGA1_c21070 at 2184.037 kb on - strand, within PGA1_c21070 at 2184.162 kb on - strand, within PGA1_c21070 at 2184.172 kb on - strand, within PGA1_c21070 at 2184.172 kb on - strand, within PGA1_c21070 at 2184.265 kb on + strand, within PGA1_c21070 at 2184.351 kb on + strand, within PGA1_c21070 at 2184.369 kb on - strand, within PGA1_c21070 at 2184.505 kb on + strand, within PGA1_c21070 at 2184.505 kb on + strand, within PGA1_c21070 at 2184.513 kb on - strand, within PGA1_c21070 at 2184.557 kb on - strand, within PGA1_c21070 at 2184.629 kb on - strand, within PGA1_c21070 at 2184.775 kb on + strand at 2184.775 kb on + strand at 2184.782 kb on + strand at 2184.934 kb on + strand at 2184.996 kb on + strand, within PGA1_c21080 at 2185.115 kb on + strand, within PGA1_c21080 at 2185.115 kb on + strand, within PGA1_c21080 at 2185.215 kb on + strand, within PGA1_c21080 at 2185.215 kb on + strand, within PGA1_c21080 at 2185.223 kb on - strand, within PGA1_c21080 at 2185.255 kb on + strand, within PGA1_c21080 at 2185.309 kb on + strand, within PGA1_c21080 at 2185.309 kb on + strand, within PGA1_c21080 at 2185.325 kb on - strand, within PGA1_c21080 at 2185.344 kb on + strand, within PGA1_c21080 at 2185.430 kb on + strand, within PGA1_c21080 at 2185.432 kb on + strand, within PGA1_c21080 at 2185.468 kb on + strand, within PGA1_c21080 at 2185.479 kb on - strand, within PGA1_c21080 at 2185.553 kb on + strand, within PGA1_c21080 at 2185.693 kb on - strand, within PGA1_c21080 at 2185.703 kb on - strand, within PGA1_c21080 at 2185.703 kb on - strand, within PGA1_c21080 at 2185.786 kb on + strand, within PGA1_c21080 at 2185.798 kb on - strand, within PGA1_c21080 at 2185.832 kb on - strand at 2185.856 kb on - strand at 2185.880 kb on + strand at 2186.001 kb on - strand at 2186.066 kb on - strand, within PGA1_c21090 at 2186.095 kb on - strand, within PGA1_c21090 at 2186.137 kb on + strand, within PGA1_c21090 at 2186.166 kb on + strand, within PGA1_c21090 at 2186.189 kb on - strand, within PGA1_c21090 at 2186.200 kb on - strand, within PGA1_c21090 at 2186.205 kb on - strand, within PGA1_c21090 at 2186.296 kb on - strand, within PGA1_c21090 at 2186.314 kb on + strand, within PGA1_c21090 at 2186.317 kb on - strand, within PGA1_c21090 at 2186.317 kb on - strand, within PGA1_c21090 at 2186.374 kb on - strand, within PGA1_c21090 at 2186.374 kb on - strand, within PGA1_c21090 at 2186.409 kb on + strand, within PGA1_c21090 at 2186.417 kb on - strand, within PGA1_c21090 at 2186.447 kb on - strand, within PGA1_c21090 at 2186.485 kb on - strand, within PGA1_c21090 at 2186.489 kb on + strand, within PGA1_c21090 at 2186.526 kb on + strand, within PGA1_c21090 at 2186.653 kb on + strand, within PGA1_c21090 at 2186.653 kb on + strand, within PGA1_c21090 at 2186.706 kb on - strand, within PGA1_c21090 at 2186.714 kb on + strand, within PGA1_c21090 at 2186.789 kb on + strand at 2186.789 kb on + strand at 2186.789 kb on + strand at 2186.789 kb on + strand at 2186.811 kb on + strand at 2186.845 kb on - strand at 2186.859 kb on + strand at 2186.862 kb on + strand at 2186.862 kb on + strand at 2186.870 kb on - strand at 2186.870 kb on - strand at 2186.892 kb on + strand at 2186.892 kb on + strand at 2186.892 kb on + strand at 2186.892 kb on + strand at 2186.892 kb on + strand at 2186.900 kb on - strand at 2186.900 kb on - strand at 2186.915 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 2,183,893 - PGA1_c21070 0.34 -1.8 2,183,898 - PGA1_c21070 0.34 -0.6 2,183,924 - PGA1_c21070 0.36 +1.2 2,183,929 - PGA1_c21070 0.36 +0.8 2,183,980 + PGA1_c21070 0.40 +1.4 2,184,005 + PGA1_c21070 0.41 +0.4 2,184,005 + PGA1_c21070 0.41 +1.2 2,184,013 - PGA1_c21070 0.42 +0.4 2,184,019 + PGA1_c21070 0.42 +0.4 2,184,024 + PGA1_c21070 0.43 -0.2 2,184,027 - PGA1_c21070 0.43 +0.8 2,184,032 - PGA1_c21070 0.43 +0.2 2,184,032 - PGA1_c21070 0.43 +0.8 2,184,032 - PGA1_c21070 0.43 +1.9 2,184,032 - PGA1_c21070 0.43 +1.0 2,184,037 - PGA1_c21070 0.43 +3.6 2,184,162 - PGA1_c21070 0.52 +1.4 2,184,172 - PGA1_c21070 0.53 +0.8 2,184,172 - PGA1_c21070 0.53 -0.5 2,184,265 + PGA1_c21070 0.59 +0.0 2,184,351 + PGA1_c21070 0.65 -0.5 2,184,369 - PGA1_c21070 0.66 -0.8 2,184,505 + PGA1_c21070 0.75 -0.0 2,184,505 + PGA1_c21070 0.75 +0.6 2,184,513 - PGA1_c21070 0.76 +0.8 2,184,557 - PGA1_c21070 0.79 -0.8 2,184,629 - PGA1_c21070 0.84 -0.2 2,184,775 + -1.2 2,184,775 + -1.1 2,184,782 + +0.6 2,184,934 + -0.2 2,184,996 + PGA1_c21080 0.11 -0.6 2,185,115 + PGA1_c21080 0.23 +0.8 2,185,115 + PGA1_c21080 0.23 +1.3 2,185,215 + PGA1_c21080 0.32 +1.1 2,185,215 + PGA1_c21080 0.32 -1.2 2,185,223 - PGA1_c21080 0.33 +0.8 2,185,255 + PGA1_c21080 0.36 +2.4 2,185,309 + PGA1_c21080 0.42 +0.8 2,185,309 + PGA1_c21080 0.42 +1.4 2,185,325 - PGA1_c21080 0.43 +0.8 2,185,344 + PGA1_c21080 0.45 -1.7 2,185,430 + PGA1_c21080 0.53 -1.2 2,185,432 + PGA1_c21080 0.53 +0.8 2,185,468 + PGA1_c21080 0.57 -0.6 2,185,479 - PGA1_c21080 0.58 +2.2 2,185,553 + PGA1_c21080 0.65 +0.2 2,185,693 - PGA1_c21080 0.79 +1.1 2,185,703 - PGA1_c21080 0.79 +0.4 2,185,703 - PGA1_c21080 0.79 +0.8 2,185,786 + PGA1_c21080 0.87 +0.5 2,185,798 - PGA1_c21080 0.89 +1.5 2,185,832 - +0.8 2,185,856 - +0.0 2,185,880 + +1.9 2,186,001 - +0.8 2,186,066 - PGA1_c21090 0.15 +0.8 2,186,095 - PGA1_c21090 0.18 -0.5 2,186,137 + PGA1_c21090 0.23 +1.0 2,186,166 + PGA1_c21090 0.26 +1.4 2,186,189 - PGA1_c21090 0.28 +0.8 2,186,200 - PGA1_c21090 0.29 +0.8 2,186,205 - PGA1_c21090 0.30 +0.3 2,186,296 - PGA1_c21090 0.40 +1.2 2,186,314 + PGA1_c21090 0.42 +0.2 2,186,317 - PGA1_c21090 0.42 +1.1 2,186,317 - PGA1_c21090 0.42 -2.0 2,186,374 - PGA1_c21090 0.48 +1.2 2,186,374 - PGA1_c21090 0.48 -0.8 2,186,409 + PGA1_c21090 0.52 -0.6 2,186,417 - PGA1_c21090 0.53 +1.4 2,186,447 - PGA1_c21090 0.56 -0.8 2,186,485 - PGA1_c21090 0.60 -0.3 2,186,489 + PGA1_c21090 0.61 -0.8 2,186,526 + PGA1_c21090 0.65 +0.2 2,186,653 + PGA1_c21090 0.78 -1.6 2,186,653 + PGA1_c21090 0.78 +1.3 2,186,706 - PGA1_c21090 0.84 -1.3 2,186,714 + PGA1_c21090 0.85 -0.7 2,186,789 + -0.5 2,186,789 + +1.5 2,186,789 + +1.0 2,186,789 + +1.8 2,186,811 + -1.5 2,186,845 - -1.6 2,186,859 + +0.2 2,186,862 + +0.6 2,186,862 + -1.2 2,186,870 - +0.4 2,186,870 - -2.4 2,186,892 + +1.2 2,186,892 + +0.2 2,186,892 + +2.4 2,186,892 + +1.2 2,186,892 + -1.8 2,186,900 - +0.4 2,186,900 - +1.5 2,186,915 - +1.2
Or see this region's nucleotide sequence