Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02060 and PGA1_c02070 are separated by 89 nucleotides PGA1_c02070 and PGA1_c02080 overlap by 1 nucleotides PGA1_c02080 and PGA1_c02090 overlap by 4 nucleotides
PGA1_c02060: PGA1_c02060 - short-chain dehydrogenase / reductase, at 188,434 to 189,162
_c02060
PGA1_c02070: PGA1_c02070 - putative GTP binding protein EngB, at 189,252 to 189,902
_c02070
PGA1_c02080: PGA1_c02080 - Uncharacterized Fe-S protein, at 189,902 to 190,654
_c02080
PGA1_c02090: PGA1_c02090 - inner membrane protein OxaA, at 190,651 to 192,468
_c02090
Position (kb) 189
190 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 188.263 kb on + strand at 188.274 kb on + strand at 188.279 kb on + strand at 188.279 kb on + strand at 188.279 kb on + strand at 188.287 kb on - strand at 188.293 kb on + strand at 188.318 kb on - strand at 188.320 kb on - strand at 188.355 kb on - strand at 188.412 kb on + strand at 188.418 kb on + strand at 188.470 kb on - strand at 188.499 kb on + strand at 188.499 kb on + strand at 188.499 kb on - strand at 188.529 kb on - strand, within PGA1_c02060 at 188.541 kb on + strand, within PGA1_c02060 at 188.549 kb on - strand, within PGA1_c02060 at 188.565 kb on + strand, within PGA1_c02060 at 188.596 kb on + strand, within PGA1_c02060 at 188.673 kb on + strand, within PGA1_c02060 at 188.796 kb on - strand, within PGA1_c02060 at 188.869 kb on + strand, within PGA1_c02060 at 188.892 kb on - strand, within PGA1_c02060 at 188.898 kb on - strand, within PGA1_c02060 at 188.920 kb on + strand, within PGA1_c02060 at 188.999 kb on - strand, within PGA1_c02060 at 188.999 kb on - strand, within PGA1_c02060 at 189.048 kb on + strand, within PGA1_c02060 at 189.111 kb on - strand at 189.154 kb on - strand at 189.168 kb on + strand at 189.238 kb on + strand at 189.246 kb on - strand at 189.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 188,263 + +0.2 188,274 + -1.3 188,279 + -2.0 188,279 + -1.8 188,279 + -0.1 188,287 - +1.5 188,293 + +0.6 188,318 - -2.4 188,320 - +1.3 188,355 - +0.6 188,412 + -2.1 188,418 + +0.3 188,470 - +0.8 188,499 + -0.5 188,499 + +1.5 188,499 - +0.2 188,529 - PGA1_c02060 0.13 -0.3 188,541 + PGA1_c02060 0.15 +3.3 188,549 - PGA1_c02060 0.16 +0.8 188,565 + PGA1_c02060 0.18 +0.3 188,596 + PGA1_c02060 0.22 -0.4 188,673 + PGA1_c02060 0.33 -2.4 188,796 - PGA1_c02060 0.50 -0.3 188,869 + PGA1_c02060 0.60 -0.2 188,892 - PGA1_c02060 0.63 -0.1 188,898 - PGA1_c02060 0.64 -1.1 188,920 + PGA1_c02060 0.67 +0.2 188,999 - PGA1_c02060 0.78 -0.8 188,999 - PGA1_c02060 0.78 +1.0 189,048 + PGA1_c02060 0.84 +0.5 189,111 - +1.4 189,154 - -0.1 189,168 + -0.8 189,238 + -0.1 189,246 - +0.9 189,251 - +0.1
Or see this region's nucleotide sequence