Experiment: m.b. Vancomycin 0.032 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c19070 and PGA1_c19080 are separated by 165 nucleotides PGA1_c19080 and PGA1_c19090 are separated by 112 nucleotides PGA1_c19090 and PGA1_c19100 overlap by 1 nucleotides PGA1_c19100 and PGA1_c19110 are separated by 141 nucleotides
PGA1_c19070: PGA1_c19070 - LysM domain., at 1,981,168 to 1,982,955
_c19070
PGA1_c19080: PGA1_c19080 - TIGR00730 family protein, at 1,983,121 to 1,983,663
_c19080
PGA1_c19090: PGA1_c19090 - Protein required for attachment to host cells, at 1,983,776 to 1,984,228
_c19090
PGA1_c19100: PGA1_c19100 - hypothetical protein, at 1,984,228 to 1,984,428
_c19100
PGA1_c19110: PGA1_c19110 - superoxide dismutase SodB, at 1,984,570 to 1,985,169
_c19110
Position (kb)
1983
1984 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1982.186 kb on + strand, within PGA1_c19070 at 1982.243 kb on + strand, within PGA1_c19070 at 1982.243 kb on + strand, within PGA1_c19070 at 1982.286 kb on - strand, within PGA1_c19070 at 1982.287 kb on - strand, within PGA1_c19070 at 1982.356 kb on - strand, within PGA1_c19070 at 1982.364 kb on - strand, within PGA1_c19070 at 1982.371 kb on - strand, within PGA1_c19070 at 1982.418 kb on - strand, within PGA1_c19070 at 1982.420 kb on + strand, within PGA1_c19070 at 1982.430 kb on + strand, within PGA1_c19070 at 1982.462 kb on - strand, within PGA1_c19070 at 1982.551 kb on - strand, within PGA1_c19070 at 1982.703 kb on - strand, within PGA1_c19070 at 1982.719 kb on + strand, within PGA1_c19070 at 1982.886 kb on - strand at 1982.941 kb on - strand at 1983.014 kb on + strand at 1983.058 kb on - strand at 1983.242 kb on - strand, within PGA1_c19080 at 1983.243 kb on + strand, within PGA1_c19080 at 1983.250 kb on - strand, within PGA1_c19080 at 1983.296 kb on - strand, within PGA1_c19080 at 1983.299 kb on + strand, within PGA1_c19080 at 1983.313 kb on - strand, within PGA1_c19080 at 1983.373 kb on - strand, within PGA1_c19080 at 1983.411 kb on + strand, within PGA1_c19080 at 1983.433 kb on + strand, within PGA1_c19080 at 1983.491 kb on + strand, within PGA1_c19080 at 1983.491 kb on + strand, within PGA1_c19080 at 1983.491 kb on + strand, within PGA1_c19080 at 1983.557 kb on - strand, within PGA1_c19080 at 1983.719 kb on + strand at 1983.730 kb on - strand at 1983.773 kb on - strand at 1983.871 kb on - strand, within PGA1_c19090 at 1983.939 kb on + strand, within PGA1_c19090 at 1984.032 kb on - strand, within PGA1_c19090 at 1984.032 kb on - strand, within PGA1_c19090 at 1984.177 kb on + strand, within PGA1_c19090 at 1984.206 kb on - strand at 1984.206 kb on - strand at 1984.206 kb on - strand at 1984.279 kb on - strand, within PGA1_c19100 at 1984.404 kb on + strand, within PGA1_c19100 at 1984.442 kb on + strand at 1984.467 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Vancomycin 0.032 mg/ml remove 1,982,186 + PGA1_c19070 0.57 +1.4 1,982,243 + PGA1_c19070 0.60 -0.8 1,982,243 + PGA1_c19070 0.60 +1.5 1,982,286 - PGA1_c19070 0.63 -0.9 1,982,287 - PGA1_c19070 0.63 +0.2 1,982,356 - PGA1_c19070 0.66 +0.1 1,982,364 - PGA1_c19070 0.67 +0.2 1,982,371 - PGA1_c19070 0.67 +1.4 1,982,418 - PGA1_c19070 0.70 -0.7 1,982,420 + PGA1_c19070 0.70 +1.5 1,982,430 + PGA1_c19070 0.71 -0.4 1,982,462 - PGA1_c19070 0.72 +2.4 1,982,551 - PGA1_c19070 0.77 +0.2 1,982,703 - PGA1_c19070 0.86 +1.8 1,982,719 + PGA1_c19070 0.87 +1.0 1,982,886 - +0.9 1,982,941 - -0.8 1,983,014 + -1.2 1,983,058 - +0.2 1,983,242 - PGA1_c19080 0.22 -1.6 1,983,243 + PGA1_c19080 0.22 +0.8 1,983,250 - PGA1_c19080 0.24 -0.2 1,983,296 - PGA1_c19080 0.32 +1.4 1,983,299 + PGA1_c19080 0.33 +1.2 1,983,313 - PGA1_c19080 0.35 -0.9 1,983,373 - PGA1_c19080 0.46 +0.5 1,983,411 + PGA1_c19080 0.53 +1.3 1,983,433 + PGA1_c19080 0.57 +0.8 1,983,491 + PGA1_c19080 0.68 -0.2 1,983,491 + PGA1_c19080 0.68 +0.6 1,983,491 + PGA1_c19080 0.68 +0.8 1,983,557 - PGA1_c19080 0.80 +0.6 1,983,719 + +2.4 1,983,730 - -0.0 1,983,773 - +1.9 1,983,871 - PGA1_c19090 0.21 +2.0 1,983,939 + PGA1_c19090 0.36 -0.2 1,984,032 - PGA1_c19090 0.57 +2.0 1,984,032 - PGA1_c19090 0.57 +0.8 1,984,177 + PGA1_c19090 0.89 -1.8 1,984,206 - +1.1 1,984,206 - -0.6 1,984,206 - -1.2 1,984,279 - PGA1_c19100 0.25 -1.8 1,984,404 + PGA1_c19100 0.88 -0.2 1,984,442 + +0.8 1,984,467 + -1.7
Or see this region's nucleotide sequence